RNA–Protein interactions for RNA: ENST00000273286.5

LRTM1-201, Transcript of leucine rich repeats and transmembrane domains 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRTM1, Length 1,423 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRTM1-201ENST00000273286 CHD1O14646 1710 aa17.49■□□□□ 0.39
LRTM1-201ENST00000273286 MMRN1Q13201 1228 aa17.46■□□□□ 0.39
LRTM1-201ENST00000273286 LARP6Q9BRS8 491 aaKnown RBP17.46■□□□□ 0.39
LRTM1-201ENST00000273286 FGD5Q6ZNL6 1462 aa17.46■□□□□ 0.38
LRTM1-201ENST00000273286 RAD54L2Q9Y4B4 1467 aa17.46■□□□□ 0.38
LRTM1-201ENST00000273286 TBC1D12O60347 775 aa17.44■□□□□ 0.38
LRTM1-201ENST00000273286 UPF1Q92900 1129 aaKnown RBP eCLIP17.44■□□□□ 0.38
LRTM1-201ENST00000273286 TDRD9Q8NDG6 1382 aaKnown RBP17.43■□□□□ 0.38
LRTM1-201ENST00000273286 CADPS2Q86UW7 1296 aa17.43■□□□□ 0.38
LRTM1-201ENST00000273286 DDX27Q96GQ7 796 aaKnown RBP17.43■□□□□ 0.38
LRTM1-201ENST00000273286 MAGI1Q96QZ7 1491 aaPredicted RBP17.42■□□□□ 0.38
LRTM1-201ENST00000273286 KDM4FA0A1W2PPD8 638 aa17.41■□□□□ 0.38
LRTM1-201ENST00000273286 CUX1P39880 1505 aa17.41■□□□□ 0.38
LRTM1-201ENST00000273286 OXER1Q8TDS5 423 aa17.4■□□□□ 0.38
LRTM1-201ENST00000273286 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.4■□□□□ 0.38
LRTM1-201ENST00000273286 CYB5RLQ6IPT4 315 aa17.39■□□□□ 0.38
LRTM1-201ENST00000273286 GRIN2BQ13224 1484 aa17.39■□□□□ 0.37
LRTM1-201ENST00000273286 SNAPC4Q5SXM2 1469 aa17.39■□□□□ 0.37
LRTM1-201ENST00000273286 MFSD10Q14728 455 aa17.38■□□□□ 0.37
LRTM1-201ENST00000273286 CHMP7Q8WUX9 453 aaPredicted RBP17.37■□□□□ 0.37
LRTM1-201ENST00000273286 SYNJ1O43426 1573 aa17.36■□□□□ 0.37
LRTM1-201ENST00000273286 SPRYD3Q8NCJ5 442 aa17.36■□□□□ 0.37
LRTM1-201ENST00000273286 PSDA5PKW4 1024 aaPredicted RBP17.35■□□□□ 0.37
LRTM1-201ENST00000273286 ARAP1Q96P48 1450 aa17.35■□□□□ 0.37
LRTM1-201ENST00000273286 SYNJ2O15056 1496 aa17.34■□□□□ 0.37
LRTM1-201ENST00000273286 CLASP1Q7Z460 1538 aa17.33■□□□□ 0.36
LRTM1-201ENST00000273286 PBX2P40425 430 aa17.3■□□□□ 0.36
LRTM1-201ENST00000273286 GAPVD1Q14C86 1478 aa17.3■□□□□ 0.36
LRTM1-201ENST00000273286 ABCA10Q8WWZ4 1543 aa17.3■□□□□ 0.36
LRTM1-201ENST00000273286 POTEEQ6S8J3 1075 aa17.29■□□□□ 0.36
LRTM1-201ENST00000273286 ANKRD13DQ6ZTN6 518 aa17.29■□□□□ 0.36
LRTM1-201ENST00000273286 AXIN2Q9Y2T1 843 aa17.29■□□□□ 0.36
LRTM1-201ENST00000273286 LSM11P83369 360 aaKnown RBP eCLIP17.28■□□□□ 0.36
LRTM1-201ENST00000273286 PAXIP1Q6ZW49 1069 aaPredicted RBP17.27■□□□□ 0.35
LRTM1-201ENST00000273286 CFAP44Q96MT7 982 aa17.27■□□□□ 0.35
LRTM1-201ENST00000273286 PBRM1Q86U86 1689 aa17.27■□□□□ 0.35
LRTM1-201ENST00000273286 SUPT5HO00267 1087 aaKnown RBP17.26■□□□□ 0.35
LRTM1-201ENST00000273286 PPP4R3BQ5MIZ7 849 aa17.26■□□□□ 0.35
LRTM1-201ENST00000273286 ABCA5Q8WWZ7 1642 aa17.25■□□□□ 0.35
LRTM1-201ENST00000273286 WRNQ14191 1432 aaPredicted RBP eCLIP17.24■□□□□ 0.35
LRTM1-201ENST00000273286 EMILIN3Q9NT22 766 aa17.22■□□□□ 0.35
LRTM1-201ENST00000273286 MAP3K9P80192 1104 aa17.21■□□□□ 0.34
LRTM1-201ENST00000273286 ARHGAP33O14559 1287 aa17.2■□□□□ 0.34
LRTM1-201ENST00000273286 EVI5O60447 810 aa17.2■□□□□ 0.34
LRTM1-201ENST00000273286 ZNF454Q8N9F8 522 aa17.18■□□□□ 0.34
LRTM1-201ENST00000273286 MYT1LQ9UL68 1186 aa17.18■□□□□ 0.34
LRTM1-201ENST00000273286 TOP2BQ02880 1626 aa17.18■□□□□ 0.34
LRTM1-201ENST00000273286 BIVM-ERCC5R4GMW8 1640 aa17.16■□□□□ 0.34
LRTM1-201ENST00000273286 PTGER2P43116 358 aa17.16■□□□□ 0.34
LRTM1-201ENST00000273286 RNF166Q96A37 237 aaPredicted RBP17.16■□□□□ 0.34
LRTM1-201ENST00000273286 GRIN2AQ12879 1464 aa17.15■□□□□ 0.34
LRTM1-201ENST00000273286 PSEN2P49810 448 aa17.13■□□□□ 0.33
LRTM1-201ENST00000273286 ANO8Q9HCE9 1232 aaPredicted RBP17.13■□□□□ 0.33
LRTM1-201ENST00000273286 CAMK2BQ13554 666 aa17.12■□□□□ 0.33
LRTM1-201ENST00000273286 ADAMTS12P58397 1594 aa17.12■□□□□ 0.33
LRTM1-201ENST00000273286 FHAD1B1AJZ9 1412 aa17.11■□□□□ 0.33
LRTM1-201ENST00000273286 FOSBP53539 338 aa17.11■□□□□ 0.33
LRTM1-201ENST00000273286 DMRTA1Q5VZB9 504 aa17.11■□□□□ 0.33
LRTM1-201ENST00000273286 KCNK17Q96T54 332 aa17.11■□□□□ 0.33
LRTM1-201ENST00000273286 ERICH3Q5RHP9 1530 aa17.1■□□□□ 0.33
LRTM1-201ENST00000273286 NUP160Q12769 1436 aa17.09■□□□□ 0.33
LRTM1-201ENST00000273286 JPH4Q96JJ6 628 aa17.09■□□□□ 0.33
LRTM1-201ENST00000273286 KCNH8Q96L42 1107 aa17.09■□□□□ 0.33
LRTM1-201ENST00000273286 ADGRD1Q6QNK2 874 aa17.08■□□□□ 0.32
LRTM1-201ENST00000273286 DPYSL4O14531 572 aa17.05■□□□□ 0.32
LRTM1-201ENST00000273286 BCL2L12Q9HB09 334 aa17.05■□□□□ 0.32
LRTM1-201ENST00000273286 CEP170Q5SW79 1584 aa17.04■□□□□ 0.32
LRTM1-201ENST00000273286 TK2O00142 265 aa17.02■□□□□ 0.31
LRTM1-201ENST00000273286 ZDHHC16Q969W1 377 aa17.02■□□□□ 0.31
LRTM1-201ENST00000273286 SHROOM2Q13796 1616 aa17.02■□□□□ 0.31
LRTM1-201ENST00000273286 ADAM33Q9BZ11 813 aa16.99■□□□□ 0.31
LRTM1-201ENST00000273286 PTPREP23469 700 aa16.98■□□□□ 0.31
LRTM1-201ENST00000273286 WDR70Q9NW82 654 aa16.96■□□□□ 0.31
LRTM1-201ENST00000273286 PCDHGA10Q9Y5H3 936 aa16.96■□□□□ 0.31
LRTM1-201ENST00000273286 ERCC6L2Q5T890 1561 aa16.96■□□□□ 0.31
LRTM1-201ENST00000273286 HRO43593 1189 aa16.94■□□□□ 0.3
LRTM1-201ENST00000273286 E2F4Q16254 413 aa16.93■□□□□ 0.3
LRTM1-201ENST00000273286 PRG4Q92954 1404 aaPredicted RBP16.92■□□□□ 0.3
LRTM1-201ENST00000273286 PHF14O94880 888 aa16.91■□□□□ 0.3
LRTM1-201ENST00000273286 VPS9D1Q9Y2B5 631 aa16.91■□□□□ 0.3
LRTM1-201ENST00000273286 TYW1BQ6NUM6 668 aa16.9■□□□□ 0.3
LRTM1-201ENST00000273286 RUSC2Q8N2Y8 1516 aa16.88■□□□□ 0.29
LRTM1-201ENST00000273286 FBXW7Q969H0 707 aa16.88■□□□□ 0.29
LRTM1-201ENST00000273286 STAC3Q96MF2 364 aa16.87■□□□□ 0.29
LRTM1-201ENST00000273286 PDIA6Q15084 440 aa16.87■□□□□ 0.29
LRTM1-201ENST00000273286 TSHZ2Q9NRE2 1034 aa16.87■□□□□ 0.29
LRTM1-201ENST00000273286 KIF27Q86VH2 1401 aa16.86■□□□□ 0.29
LRTM1-201ENST00000273286 ZBED2Q9BTP6 218 aa16.86■□□□□ 0.29
LRTM1-201ENST00000273286 SLC4A5Q9BY07 1137 aa16.86■□□□□ 0.29
LRTM1-201ENST00000273286 CUL7Q14999 1698 aa16.85■□□□□ 0.29
LRTM1-201ENST00000273286 DDX12PQ92771 950 aa16.85■□□□□ 0.29
LRTM1-201ENST00000273286 EPAS1Q99814 870 aa16.84■□□□□ 0.29
LRTM1-201ENST00000273286 KIAA0586Q9BVV6 1533 aa16.83■□□□□ 0.28
LRTM1-201ENST00000273286 PPP1R3GB7ZBB8 358 aa16.82■□□□□ 0.28
LRTM1-201ENST00000273286 IGF1RP08069 1367 aa16.82■□□□□ 0.28
LRTM1-201ENST00000273286 SPDYE16A6NNV3 312 aaPredicted RBP16.81■□□□□ 0.28
LRTM1-201ENST00000273286 ARIH1Q9Y4X5 557 aaPredicted RBP16.79■□□□□ 0.28
LRTM1-201ENST00000273286 COL9A1P20849 921 aa16.78■□□□□ 0.28
LRTM1-201ENST00000273286 RBM33Q96EV2 1170 aaKnown RBP16.78■□□□□ 0.28
LRTM1-201ENST00000273286 MAPKBP1O60336 1514 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms