RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 TEX14Q8IWB6 1497 aa23.45■■□□□ 1.34
USP4-201ENST00000265560 DDX10Q13206 875 aaKnown RBP23.44■■□□□ 1.34
USP4-201ENST00000265560 UNC13BO14795 1591 aa23.44■■□□□ 1.34
USP4-201ENST00000265560 DCAF11Q8TEB1 546 aa23.43■■□□□ 1.34
USP4-201ENST00000265560 DHX29Q7Z478 1369 aaKnown RBP23.43■■□□□ 1.34
USP4-201ENST00000265560 DIP2BQ9P265 1576 aa23.41■■□□□ 1.34
USP4-201ENST00000265560 MAP3K4Q9Y6R4 1608 aa23.41■■□□□ 1.34
USP4-201ENST00000265560 PLA2R1Q13018 1463 aa23.4■■□□□ 1.34
USP4-201ENST00000265560 HSPA5P11021 654 aaKnown RBP23.39■■□□□ 1.34
USP4-201ENST00000265560 NEO1Q92859 1461 aa23.38■■□□□ 1.33
USP4-201ENST00000265560 CCDC144AA2RUR9 1427 aa23.38■■□□□ 1.33
USP4-201ENST00000265560 CFAP74Q9C0B2 1584 aa23.38■■□□□ 1.33
USP4-201ENST00000265560 IQGAP3Q86VI3 1631 aa23.38■■□□□ 1.33
USP4-201ENST00000265560 A2MP01023 1474 aa23.36■■□□□ 1.33
USP4-201ENST00000265560 CFAP65Q6ZU64 1925 aaKnown RBP23.36■■□□□ 1.33
USP4-201ENST00000265560 YEATS2Q9ULM3 1422 aa23.35■■□□□ 1.33
USP4-201ENST00000265560 MAGI2Q86UL8 1455 aa23.34■■□□□ 1.33
USP4-201ENST00000265560 KDM5CP41229 1560 aa23.33■■□□□ 1.33
USP4-201ENST00000265560 KANK1Q14678 1352 aa23.32■■□□□ 1.32
USP4-201ENST00000265560 GLI2P10070 1586 aa23.32■■□□□ 1.32
USP4-201ENST00000265560 HECW2Q9P2P5 1572 aa23.32■■□□□ 1.32
USP4-201ENST00000265560 MLH3Q9UHC1 1453 aa23.32■■□□□ 1.32
USP4-201ENST00000265560 EIF4G2P78344 907 aaKnown RBP eCLIP23.31■■□□□ 1.32
USP4-201ENST00000265560 YTHDC1Q96MU7 727 aaKnown RBP23.31■■□□□ 1.32
USP4-201ENST00000265560 ABCA6Q8N139 1617 aa23.31■■□□□ 1.32
USP4-201ENST00000265560 E9PCH4 1651 aa23.29■■□□□ 1.32
USP4-201ENST00000265560 FRMPD1Q5SYB0 1578 aa23.29■■□□□ 1.32
USP4-201ENST00000265560 RICTORQ6R327 1708 aa23.27■■□□□ 1.32
USP4-201ENST00000265560 WASHC2CQ9Y4E1 1318 aa23.27■■□□□ 1.32
USP4-201ENST00000265560 PPRC1Q5VV67 1664 aaKnown RBP23.26■■□□□ 1.31
USP4-201ENST00000265560 C11orf95C9JLR9 678 aaPredicted RBP23.26■■□□□ 1.31
USP4-201ENST00000265560 MROH1Q8NDA8 1641 aa23.26■■□□□ 1.31
USP4-201ENST00000265560 KIF13AQ9H1H9 1805 aa23.25■■□□□ 1.31
USP4-201ENST00000265560 DEPDC5O75140 1603 aa23.25■■□□□ 1.31
USP4-201ENST00000265560 COL17A1Q9UMD9 1497 aaPredicted RBP23.23■■□□□ 1.31
USP4-201ENST00000265560 TRHP20396 242 aaPredicted RBP23.23■■□□□ 1.31
USP4-201ENST00000265560 MLECQ14165 292 aa23.23■■□□□ 1.31
USP4-201ENST00000265560 ATP10AO60312 1499 aa23.23■■□□□ 1.31
USP4-201ENST00000265560 POLR3GLQ9BT43 218 aa23.23■■□□□ 1.31
USP4-201ENST00000265560 UGGT1Q9NYU2 1555 aa23.22■■□□□ 1.31
USP4-201ENST00000265560 CHGAP10645 457 aaKnown RBP23.22■■□□□ 1.31
USP4-201ENST00000265560 NBPF1Q3BBV0 1214 aa23.22■■□□□ 1.31
USP4-201ENST00000265560 DIP2CQ9Y2E4 1556 aa23.21■■□□□ 1.31
USP4-201ENST00000265560 CARD11Q9BXL7 1154 aa23.21■■□□□ 1.31
USP4-201ENST00000265560 CEP152O94986 1710 aa23.21■■□□□ 1.31
USP4-201ENST00000265560 WASHC2AQ641Q2 1341 aa23.2■■□□□ 1.3
USP4-201ENST00000265560 PRDM15P57071 1507 aaPredicted RBP23.19■■□□□ 1.3
USP4-201ENST00000265560 SENP3Q9H4L4 574 aaPredicted RBP23.19■■□□□ 1.3
USP4-201ENST00000265560 EIF2AK4Q9P2K8 1649 aaKnown RBP23.18■■□□□ 1.3
USP4-201ENST00000265560 TET3O43151 1660 aa23.17■■□□□ 1.3
USP4-201ENST00000265560 VWDEQ8N2E2 1590 aa23.17■■□□□ 1.3
USP4-201ENST00000265560 USP47Q96K76 1375 aa23.14■■□□□ 1.3
USP4-201ENST00000265560 SPHKAPQ2M3C7 1700 aa23.13■■□□□ 1.29
USP4-201ENST00000265560 CNGB1Q14028 1251 aaPredicted RBP23.13■■□□□ 1.29
USP4-201ENST00000265560 ROCK2O75116 1388 aaKnown RBP23.13■■□□□ 1.29
USP4-201ENST00000265560 CLTCL1P53675 1640 aa23.13■■□□□ 1.29
USP4-201ENST00000265560 NPATQ14207 1427 aa23.12■■□□□ 1.29
USP4-201ENST00000265560 PTPRTO14522 1441 aa23.11■■□□□ 1.29
USP4-201ENST00000265560 ST20-MTHFSA0A0A6YYL1 179 aa23.1■■□□□ 1.29
USP4-201ENST00000265560 UHRF1BP1Q6BDS2 1440 aa23.1■■□□□ 1.29
USP4-201ENST00000265560 EFCAB6Q5THR3 1501 aa23.1■■□□□ 1.29
USP4-201ENST00000265560 NUTM2DQ5VT03 806 aaPredicted RBP23.1■■□□□ 1.29
USP4-201ENST00000265560 SPATA31E1Q6ZUB1 1445 aa23.1■■□□□ 1.29
USP4-201ENST00000265560 RNF17Q9BXT8 1623 aaKnown RBP23.09■■□□□ 1.29
USP4-201ENST00000265560 TRPM2O94759 1503 aa23.09■■□□□ 1.29
USP4-201ENST00000265560 PRAG1Q86YV5 1406 aa23.09■■□□□ 1.29
USP4-201ENST00000265560 FBXO31Q5XUX0 539 aaPredicted RBP23.07■■□□□ 1.28
USP4-201ENST00000265560 ABCC3O15438 1527 aa23.07■■□□□ 1.28
USP4-201ENST00000265560 RALGAPBQ86X10 1494 aa23.05■■□□□ 1.28
USP4-201ENST00000265560 KIF7Q2M1P5 1343 aa23.05■■□□□ 1.28
USP4-201ENST00000265560 ARID4BQ4LE39 1312 aaPredicted RBP23.04■■□□□ 1.28
USP4-201ENST00000265560 CCDC7Q96M83 1385 aa23.03■■□□□ 1.28
USP4-201ENST00000265560 ZMYM4Q5VZL5 1548 aa23.02■■□□□ 1.28
USP4-201ENST00000265560 SIGLEC1Q9BZZ2 1709 aa23.02■■□□□ 1.28
USP4-201ENST00000265560 ADGRF5Q8IZF2 1346 aa23.01■■□□□ 1.27
USP4-201ENST00000265560 LMTK2Q8IWU2 1503 aa22.99■■□□□ 1.27
USP4-201ENST00000265560 BCORL1Q5H9F3 1711 aa22.99■■□□□ 1.27
USP4-201ENST00000265560 ANP32CO43423 234 aa22.98■■□□□ 1.27
USP4-201ENST00000265560 PLPPR3Q6T4P5 718 aa22.98■■□□□ 1.27
USP4-201ENST00000265560 IDI1Q13907 227 aa22.98■■□□□ 1.27
USP4-201ENST00000265560 CAMSAP1Q5T5Y3 1602 aa22.98■■□□□ 1.27
USP4-201ENST00000265560 CFAP70Q5T0N1 1121 aa22.97■■□□□ 1.27
USP4-201ENST00000265560 TRPM1Q7Z4N2 1603 aa22.97■■□□□ 1.27
USP4-201ENST00000265560 KIF1BO60333 1816 aa22.94■■□□□ 1.26
USP4-201ENST00000265560 MROH2AA6NES4 1674 aa22.94■■□□□ 1.26
USP4-201ENST00000265560 DNAJC5Q9H3Z4 198 aa22.93■■□□□ 1.26
USP4-201ENST00000265560 NOS1P29475 1434 aa22.91■■□□□ 1.26
USP4-201ENST00000265560 ESF1Q9H501 851 aaKnown RBP22.9■■□□□ 1.26
USP4-201ENST00000265560 CNTLNQ9NXG0 1405 aa22.89■■□□□ 1.25
USP4-201ENST00000265560 SYNMO15061 1565 aa22.88■■□□□ 1.25
USP4-201ENST00000265560 TMEM132EQ6IEE7 984 aa22.88■■□□□ 1.25
USP4-201ENST00000265560 MADDQ8WXG6 1647 aa22.88■■□□□ 1.25
USP4-201ENST00000265560 STAG3Q9UJ98 1225 aa22.86■■□□□ 1.25
USP4-201ENST00000265560 ARHGEF40Q8TER5 1519 aa22.86■■□□□ 1.25
USP4-201ENST00000265560 CLTCQ00610 1675 aaKnown RBP22.85■■□□□ 1.25
USP4-201ENST00000265560 GPRASP1Q5JY77 1395 aa22.85■■□□□ 1.25
USP4-201ENST00000265560 TESK2Q96S53 571 aa22.84■■□□□ 1.25
USP4-201ENST00000265560 CEBPAP49715 358 aaPredicted RBP22.82■■□□□ 1.24
USP4-201ENST00000265560 DISP3Q9P2K9 1392 aa22.82■■□□□ 1.24
USP4-201ENST00000265560 ARHGAP31Q2M1Z3 1444 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms