RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 DEPDC5O75140 1603 aa33.3■■■□□ 2.92
SMARCB1-201ENST00000263121 ABCA6Q8N139 1617 aa33.3■■■□□ 2.92
SMARCB1-201ENST00000263121 NEUROD1Q13562 356 aa33.3■■■□□ 2.92
SMARCB1-201ENST00000263121 FOXD1Q16676 465 aa33.29■■■□□ 2.92
SMARCB1-201ENST00000263121 TIMELESSQ9UNS1 1208 aa33.29■■■□□ 2.92
SMARCB1-201ENST00000263121 ZMYM4Q5VZL5 1548 aa33.28■■■□□ 2.92
SMARCB1-201ENST00000263121 A2MP01023 1474 aa33.27■■■□□ 2.92
SMARCB1-201ENST00000263121 PKD2Q13563 968 aa33.26■■■□□ 2.91
SMARCB1-201ENST00000263121 DIP2CQ9Y2E4 1556 aa33.24■■■□□ 2.91
SMARCB1-201ENST00000263121 GRWD1Q9BQ67 446 aaKnown RBP eCLIP33.2■■■□□ 2.92e-8■□□□□ 11.2
SMARCB1-201ENST00000263121 BCORL1Q5H9F3 1711 aa33.18■■■□□ 2.9
SMARCB1-201ENST00000263121 MROH1Q8NDA8 1641 aa33.18■■■□□ 2.9
SMARCB1-201ENST00000263121 PRDM15P57071 1507 aaPredicted RBP33.18■■■□□ 2.9
SMARCB1-201ENST00000263121 VWDEQ8N2E2 1590 aa33.17■■■□□ 2.9
SMARCB1-201ENST00000263121 RNF17Q9BXT8 1623 aaKnown RBP33.17■■■□□ 2.9
SMARCB1-201ENST00000263121 RPRD2Q5VT52 1461 aaKnown RBP33.16■■■□□ 2.9
SMARCB1-201ENST00000263121 TONSLQ96HA7 1378 aa33.15■■■□□ 2.9
SMARCB1-201ENST00000263121 KIF3BO15066 747 aa33.15■■■□□ 2.9
SMARCB1-201ENST00000263121 YEATS2Q9ULM3 1422 aa33.15■■■□□ 2.9
SMARCB1-201ENST00000263121 COL17A1Q9UMD9 1497 aaPredicted RBP33.13■■■□□ 2.89
SMARCB1-201ENST00000263121 KANK1Q14678 1352 aa33.08■■■□□ 2.89
SMARCB1-201ENST00000263121 TET3O43151 1660 aa33.07■■■□□ 2.88
SMARCB1-201ENST00000263121 PPP1R15AO75807 674 aaPredicted RBP33.04■■■□□ 2.88
SMARCB1-201ENST00000263121 REREQ9P2R6 1566 aa33.03■■■□□ 2.88
SMARCB1-201ENST00000263121 E9PCH4 1651 aa33.03■■■□□ 2.88
SMARCB1-201ENST00000263121 ATP10AO60312 1499 aa33.02■■■□□ 2.88
SMARCB1-201ENST00000263121 LMTK2Q8IWU2 1503 aa33.01■■■□□ 2.87
SMARCB1-201ENST00000263121 PLA2R1Q13018 1463 aa33■■■□□ 2.87
SMARCB1-201ENST00000263121 ARHGEF40Q8TER5 1519 aa32.97■■■□□ 2.87
SMARCB1-201ENST00000263121 TRHP20396 242 aaPredicted RBP32.95■■■□□ 2.87
SMARCB1-201ENST00000263121 CEP152O94986 1710 aa32.95■■■□□ 2.86
SMARCB1-201ENST00000263121 EFCAB6Q5THR3 1501 aa32.94■■■□□ 2.86
SMARCB1-201ENST00000263121 L3MBTL2Q969R5 705 aa32.93■■■□□ 2.86
SMARCB1-201ENST00000263121 AGLP35573 1532 aa32.92■■■□□ 2.86
SMARCB1-201ENST00000263121 CCDC144AA2RUR9 1427 aa32.9■■■□□ 2.86
SMARCB1-201ENST00000263121 GGT6Q6P531 493 aa32.89■■■□□ 2.86
SMARCB1-201ENST00000263121 SPHKAPQ2M3C7 1700 aa32.89■■■□□ 2.86
SMARCB1-201ENST00000263121 ABCC3O15438 1527 aa32.89■■■□□ 2.86
SMARCB1-201ENST00000263121 PTPRTO14522 1441 aa32.89■■■□□ 2.86
SMARCB1-201ENST00000263121 TRPM2O94759 1503 aa32.88■■■□□ 2.85
SMARCB1-201ENST00000263121 ZC3H13Q5T200 1668 aaKnown RBP32.85■■■□□ 2.85
SMARCB1-201ENST00000263121 ZNF316A6NFI3 1004 aaPredicted RBP32.85■■■□□ 2.85
SMARCB1-201ENST00000263121 SIGLEC1Q9BZZ2 1709 aa32.84■■■□□ 2.85
SMARCB1-201ENST00000263121 CAMSAP1Q5T5Y3 1602 aa32.81■■■□□ 2.84
SMARCB1-201ENST00000263121 WASHC2CQ9Y4E1 1318 aa32.79■■■□□ 2.84
SMARCB1-201ENST00000263121 NPATQ14207 1427 aa32.77■■■□□ 2.84
SMARCB1-201ENST00000263121 CLTCL1P53675 1640 aa32.75■■■□□ 2.83
SMARCB1-201ENST00000263121 ARHGAP31Q2M1Z3 1444 aa32.73■■■□□ 2.83
SMARCB1-201ENST00000263121 PPP6R1Q9UPN7 881 aa32.69■■■□□ 2.82
SMARCB1-201ENST00000263121 SPATA31E1Q6ZUB1 1445 aa32.69■■■□□ 2.82
SMARCB1-201ENST00000263121 NBPF8Q3BBV2 869 aa32.69■■■□□ 2.82
SMARCB1-201ENST00000263121 UHRF1BP1Q6BDS2 1440 aa32.68■■■□□ 2.82
SMARCB1-201ENST00000263121 NEURL4Q96JN8 1562 aa32.66■■■□□ 2.82
SMARCB1-201ENST00000263121 CNTLNQ9NXG0 1405 aa32.65■■■□□ 2.82
SMARCB1-201ENST00000263121 NOS1P29475 1434 aa32.64■■■□□ 2.82
SMARCB1-201ENST00000263121 UGGT1Q9NYU2 1555 aa32.63■■■□□ 2.81
SMARCB1-201ENST00000263121 DCAF11Q8TEB1 546 aa32.59■■■□□ 2.81
SMARCB1-201ENST00000263121 CLTCQ00610 1675 aaKnown RBP32.58■■■□□ 2.81
SMARCB1-201ENST00000263121 RGL3Q3MIN7 710 aa32.58■■■□□ 2.81
SMARCB1-201ENST00000263121 KIF1BO60333 1816 aa32.57■■■□□ 2.8
SMARCB1-201ENST00000263121 SYNMO15061 1565 aa32.57■■■□□ 2.8
SMARCB1-201ENST00000263121 CFAP65Q6ZU64 1925 aaKnown RBP32.56■■■□□ 2.8
SMARCB1-201ENST00000263121 PREX1Q8TCU6 1659 aa32.55■■■□□ 2.8
SMARCB1-201ENST00000263121 PIK3C2BO00750 1634 aa32.54■■■□□ 2.8
SMARCB1-201ENST00000263121 RALGAPBQ86X10 1494 aa32.53■■■□□ 2.8
SMARCB1-201ENST00000263121 KDM2AQ9Y2K7 1162 aa32.53■■■□□ 2.8
SMARCB1-201ENST00000263121 PRAG1Q86YV5 1406 aa32.52■■■□□ 2.8
SMARCB1-201ENST00000263121 MLECQ14165 292 aa32.52■■■□□ 2.8
SMARCB1-201ENST00000263121 ADGRB3O60242 1522 aa32.51■■■□□ 2.79
SMARCB1-201ENST00000263121 MROH2AA6NES4 1674 aa32.5■■■□□ 2.79
SMARCB1-201ENST00000263121 ZNF326Q5BKZ1 582 aaKnown RBP32.5■■■□□ 2.79
SMARCB1-201ENST00000263121 ARID4BQ4LE39 1312 aaPredicted RBP32.48■■■□□ 2.79
SMARCB1-201ENST00000263121 ERVK-7P63135 1459 aa32.46■■■□□ 2.79
SMARCB1-201ENST00000263121 TRPM1Q7Z4N2 1603 aa32.45■■■□□ 2.79
SMARCB1-201ENST00000263121 STAC3Q96MF2 364 aa32.44■■■□□ 2.78
SMARCB1-201ENST00000263121 IFT172Q9UG01 1749 aa32.43■■■□□ 2.78
SMARCB1-201ENST00000263121 DIEXFQ68CQ4 756 aaKnown RBP32.42■■■□□ 2.78
SMARCB1-201ENST00000263121 SPATA31D1Q6ZQQ2 1576 aa32.42■■■□□ 2.78
SMARCB1-201ENST00000263121 MADDQ8WXG6 1647 aa32.42■■■□□ 2.78
SMARCB1-201ENST00000263121 EIF4G2P78344 907 aaKnown RBP eCLIP32.41■■■□□ 2.78
SMARCB1-201ENST00000263121 SLC52A1Q9NWF4 448 aa32.4■■■□□ 2.78
SMARCB1-201ENST00000263121 HSPA5P11021 654 aaKnown RBP32.39■■■□□ 2.78
SMARCB1-201ENST00000263121 FBXO31Q5XUX0 539 aaPredicted RBP32.38■■■□□ 2.77
SMARCB1-201ENST00000263121 HIRIP3Q9BW71 556 aaPredicted RBP32.38■■■□□ 2.77
SMARCB1-201ENST00000263121 MYOM2P54296 1465 aa32.38■■■□□ 2.77
SMARCB1-201ENST00000263121 ESF1Q9H501 851 aaKnown RBP32.37■■■□□ 2.77
SMARCB1-201ENST00000263121 ZMYM3Q14202 1370 aa32.36■■■□□ 2.77
SMARCB1-201ENST00000263121 IDI1Q13907 227 aa32.34■■■□□ 2.77
SMARCB1-201ENST00000263121 LAMC1P11047 1609 aa32.33■■■□□ 2.77
SMARCB1-201ENST00000263121 GPRASP1Q5JY77 1395 aa32.33■■■□□ 2.77
SMARCB1-201ENST00000263121 PPLO60437 1756 aa32.32■■■□□ 2.76
SMARCB1-201ENST00000263121 ROCK2O75116 1388 aaKnown RBP32.31■■■□□ 2.76
SMARCB1-201ENST00000263121 CHGAP10645 457 aaKnown RBP32.31■■■□□ 2.76
SMARCB1-201ENST00000263121 TMEM131LA2VDJ0 1609 aa32.31■■■□□ 2.76
SMARCB1-201ENST00000263121 USP47Q96K76 1375 aa32.3■■■□□ 2.76
SMARCB1-201ENST00000263121 NRXN1Q9ULB1 1477 aa32.29■■■□□ 2.76
SMARCB1-201ENST00000263121 RPGRIP1LQ68CZ1 1315 aa32.29■■■□□ 2.76
SMARCB1-201ENST00000263121 CARD11Q9BXL7 1154 aa32.28■■■□□ 2.76
SMARCB1-201ENST00000263121 KIAA1210Q9ULL0 1709 aa32.27■■■□□ 2.76
SMARCB1-201ENST00000263121 FER1L4A9Z1Z3 1794 aa32.27■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms