RNA–Protein interactions for RNA: ENST00000260653.4

SIX3-201, Transcript of SIX homeobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX3, Length 2,523 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3-201ENST00000260653 FAM69CQ0P6D2 419 aa32.02■■■□□ 2.72
SIX3-201ENST00000260653 DHX29Q7Z478 1369 aaKnown RBP31.97■■■□□ 2.71
SIX3-201ENST00000260653 DEPDC5O75140 1603 aa31.96■■■□□ 2.71
SIX3-201ENST00000260653 HECW2Q9P2P5 1572 aa31.96■■■□□ 2.71
SIX3-201ENST00000260653 MLH3Q9UHC1 1453 aa31.95■■■□□ 2.71
SIX3-201ENST00000260653 RAPGEF3O95398 923 aa31.94■■■□□ 2.7
SIX3-201ENST00000260653 EIF2AK4Q9P2K8 1649 aaKnown RBP31.93■■■□□ 2.7
SIX3-201ENST00000260653 KIF3BO15066 747 aa31.9■■■□□ 2.7
SIX3-201ENST00000260653 TSPOAP1O95153 1857 aa31.9■■■□□ 2.7
SIX3-201ENST00000260653 RICTORQ6R327 1708 aa31.9■■■□□ 2.7
SIX3-201ENST00000260653 A2MP01023 1474 aa31.88■■■□□ 2.69
SIX3-201ENST00000260653 PLA2R1Q13018 1463 aa31.88■■■□□ 2.69
SIX3-201ENST00000260653 ABCA6Q8N139 1617 aa31.87■■■□□ 2.69
SIX3-201ENST00000260653 PPRC1Q5VV67 1664 aaKnown RBP31.87■■■□□ 2.69
SIX3-201ENST00000260653 MROH1Q8NDA8 1641 aa31.85■■■□□ 2.69
SIX3-201ENST00000260653 FRMPD1Q5SYB0 1578 aa31.85■■■□□ 2.69
SIX3-201ENST00000260653 PRDM15P57071 1507 aaPredicted RBP31.84■■■□□ 2.69
SIX3-201ENST00000260653 HIRIP3Q9BW71 556 aaPredicted RBP31.84■■■□□ 2.69
SIX3-201ENST00000260653 VWDEQ8N2E2 1590 aa31.84■■■□□ 2.69
SIX3-201ENST00000260653 NBPF8Q3BBV2 869 aa31.83■■■□□ 2.69
SIX3-201ENST00000260653 CCDC144AA2RUR9 1427 aa31.83■■■□□ 2.69
SIX3-201ENST00000260653 E9PCH4 1651 aa31.82■■■□□ 2.68
SIX3-201ENST00000260653 KIF13AQ9H1H9 1805 aa31.81■■■□□ 2.68
SIX3-201ENST00000260653 KANK1Q14678 1352 aa31.8■■■□□ 2.68
SIX3-201ENST00000260653 ATP10AO60312 1499 aa31.78■■■□□ 2.68
SIX3-201ENST00000260653 TET3O43151 1660 aa31.78■■■□□ 2.68
SIX3-201ENST00000260653 DIP2CQ9Y2E4 1556 aa31.77■■■□□ 2.68
SIX3-201ENST00000260653 MYT1Q01538 1121 aa31.76■■■□□ 2.68
SIX3-201ENST00000260653 RNF17Q9BXT8 1623 aaKnown RBP31.76■■■□□ 2.67
SIX3-201ENST00000260653 YEATS2Q9ULM3 1422 aa31.72■■■□□ 2.67
SIX3-201ENST00000260653 BCORL1Q5H9F3 1711 aa31.7■■■□□ 2.67
SIX3-201ENST00000260653 ZNF326Q5BKZ1 582 aaKnown RBP31.69■■■□□ 2.66
SIX3-201ENST00000260653 ZMYM4Q5VZL5 1548 aa31.68■■■□□ 2.66
SIX3-201ENST00000260653 SPHKAPQ2M3C7 1700 aa31.68■■■□□ 2.66
SIX3-201ENST00000260653 CEP152O94986 1710 aa31.66■■■□□ 2.66
SIX3-201ENST00000260653 MIER1Q8N108 512 aa31.66■■■□□ 2.66
SIX3-201ENST00000260653 TRPM2O94759 1503 aa31.66■■■□□ 2.66
SIX3-201ENST00000260653 HSPA5P11021 654 aaKnown RBP31.66■■■□□ 2.66
SIX3-201ENST00000260653 PTPRTO14522 1441 aa31.65■■■□□ 2.66
SIX3-201ENST00000260653 UHRF1BP1Q6BDS2 1440 aa31.65■■■□□ 2.66
SIX3-201ENST00000260653 DCAF11Q8TEB1 546 aa31.65■■■□□ 2.66
SIX3-201ENST00000260653 EFCAB6Q5THR3 1501 aa31.65■■■□□ 2.66
SIX3-201ENST00000260653 GGT6Q6P531 493 aa31.64■■■□□ 2.66
SIX3-201ENST00000260653 EIF4G2P78344 907 aaKnown RBP eCLIP31.64■■■□□ 2.65
SIX3-201ENST00000260653 LMTK2Q8IWU2 1503 aa31.63■■■□□ 2.65
SIX3-201ENST00000260653 KDM2AQ9Y2K7 1162 aa31.63■■■□□ 2.65
SIX3-201ENST00000260653 RGL3Q3MIN7 710 aa31.63■■■□□ 2.65
SIX3-201ENST00000260653 CLTCL1P53675 1640 aa31.58■■■□□ 2.65
SIX3-201ENST00000260653 DDX10Q13206 875 aaKnown RBP31.56■■■□□ 2.64
SIX3-201ENST00000260653 RALGAPBQ86X10 1494 aa31.56■■■□□ 2.64
SIX3-201ENST00000260653 SPATA31E1Q6ZUB1 1445 aa31.55■■■□□ 2.64
SIX3-201ENST00000260653 COL17A1Q9UMD9 1497 aaPredicted RBP31.54■■■□□ 2.64
SIX3-201ENST00000260653 ABCC3O15438 1527 aa31.54■■■□□ 2.64
SIX3-201ENST00000260653 WASHC2CQ9Y4E1 1318 aa31.51■■■□□ 2.63
SIX3-201ENST00000260653 PRAG1Q86YV5 1406 aa31.5■■■□□ 2.63
SIX3-201ENST00000260653 NPATQ14207 1427 aa31.49■■■□□ 2.63
SIX3-201ENST00000260653 UGGT1Q9NYU2 1555 aa31.49■■■□□ 2.63
SIX3-201ENST00000260653 CAMSAP1Q5T5Y3 1602 aa31.47■■■□□ 2.63
SIX3-201ENST00000260653 CFAP65Q6ZU64 1925 aaKnown RBP31.45■■■□□ 2.63
SIX3-201ENST00000260653 USP47Q96K76 1375 aa31.45■■■□□ 2.63
SIX3-201ENST00000260653 TRPM1Q7Z4N2 1603 aa31.44■■■□□ 2.62
SIX3-201ENST00000260653 WASHC2AQ641Q2 1341 aa31.43■■■□□ 2.62
SIX3-201ENST00000260653 REREQ9P2R6 1566 aa31.42■■■□□ 2.62
SIX3-201ENST00000260653 CARD11Q9BXL7 1154 aa31.41■■■□□ 2.62
SIX3-201ENST00000260653 ZC3H13Q5T200 1668 aaKnown RBP31.41■■■□□ 2.62
SIX3-201ENST00000260653 ROCK2O75116 1388 aaKnown RBP31.39■■■□□ 2.62
SIX3-201ENST00000260653 C11orf95C9JLR9 678 aaPredicted RBP31.38■■■□□ 2.61
SIX3-201ENST00000260653 ARHGEF40Q8TER5 1519 aa31.38■■■□□ 2.61
SIX3-201ENST00000260653 KIF1BO60333 1816 aa31.37■■■□□ 2.61
SIX3-201ENST00000260653 SIGLEC1Q9BZZ2 1709 aa31.37■■■□□ 2.61
SIX3-201ENST00000260653 NEURL4Q96JN8 1562 aa31.36■■■□□ 2.61
SIX3-201ENST00000260653 AGLP35573 1532 aa31.35■■■□□ 2.61
SIX3-201ENST00000260653 CNTLNQ9NXG0 1405 aa31.35■■■□□ 2.61
SIX3-201ENST00000260653 NBPF1Q3BBV0 1214 aa31.33■■■□□ 2.61
SIX3-201ENST00000260653 MROH2AA6NES4 1674 aa31.33■■■□□ 2.61
SIX3-201ENST00000260653 MADDQ8WXG6 1647 aa31.32■■■□□ 2.6
SIX3-201ENST00000260653 CCDC7Q96M83 1385 aa31.32■■■□□ 2.6
SIX3-201ENST00000260653 ARHGAP31Q2M1Z3 1444 aa31.32■■■□□ 2.6
SIX3-201ENST00000260653 POLR1AO95602 1720 aaPredicted RBP31.31■■■□□ 2.6
SIX3-201ENST00000260653 NOS1P29475 1434 aa31.31■■■□□ 2.6
SIX3-201ENST00000260653 GPRASP1Q5JY77 1395 aa31.3■■■□□ 2.6
SIX3-201ENST00000260653 SYNMO15061 1565 aa31.27■■■□□ 2.6
SIX3-201ENST00000260653 ADGRB3O60242 1522 aa31.27■■■□□ 2.6
SIX3-201ENST00000260653 KIF7Q2M1P5 1343 aa31.26■■■□□ 2.6
SIX3-201ENST00000260653 LAMC1P11047 1609 aa31.25■■■□□ 2.59
SIX3-201ENST00000260653 STAC3Q96MF2 364 aa31.24■■■□□ 2.59
SIX3-201ENST00000260653 ST20-MTHFSA0A0A6YYL1 179 aa31.23■■■□□ 2.59
SIX3-201ENST00000260653 TRHP20396 242 aaPredicted RBP31.23■■■□□ 2.59
SIX3-201ENST00000260653 IFT172Q9UG01 1749 aa31.22■■■□□ 2.59
SIX3-201ENST00000260653 PIK3C2BO00750 1634 aa31.22■■■□□ 2.59
SIX3-201ENST00000260653 CHGAP10645 457 aaKnown RBP31.22■■■□□ 2.59
SIX3-201ENST00000260653 MYOM2P54296 1465 aa31.2■■■□□ 2.58
SIX3-201ENST00000260653 PREX1Q8TCU6 1659 aa31.2■■■□□ 2.58
SIX3-201ENST00000260653 MLECQ14165 292 aa31.19■■■□□ 2.58
SIX3-201ENST00000260653 CLTCQ00610 1675 aaKnown RBP31.18■■■□□ 2.58
SIX3-201ENST00000260653 PPP6R1Q9UPN7 881 aa31.17■■■□□ 2.58
SIX3-201ENST00000260653 YTHDC1Q96MU7 727 aaKnown RBP31.17■■■□□ 2.58
SIX3-201ENST00000260653 ADGRF5Q8IZF2 1346 aa31.14■■■□□ 2.58
SIX3-201ENST00000260653 ANP32CO43423 234 aa31.14■■■□□ 2.58
SIX3-201ENST00000260653 DNAJC5Q9H3Z4 198 aa31.14■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms