RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 FANCIQ9NVI1 1328 aa20.68■□□□□ 0.9
DDX56-201ENST00000258772 NUDCQ9Y266 331 aa20.67■□□□□ 0.9
DDX56-201ENST00000258772 TMC1Q8TDI8 760 aa20.66■□□□□ 0.9
DDX56-201ENST00000258772 MSH5O43196 834 aa20.66■□□□□ 0.9
DDX56-201ENST00000258772 RNF123Q5XPI4 1314 aa20.62■□□□□ 0.89
DDX56-201ENST00000258772 KTN1Q86UP2 1357 aaKnown RBP20.62■□□□□ 0.89
DDX56-201ENST00000258772 RALBP1Q15311 655 aa20.61■□□□□ 0.89
DDX56-201ENST00000258772 CCDC144AA2RUR9 1427 aa20.61■□□□□ 0.89
DDX56-201ENST00000258772 E9PCH4 1651 aa20.6■□□□□ 0.89
DDX56-201ENST00000258772 MYBBP1AQ9BQG0 1328 aaKnown RBP20.6■□□□□ 0.89
DDX56-201ENST00000258772 SYCP2Q9BX26 1530 aa20.6■□□□□ 0.89
DDX56-201ENST00000258772 BRD4O60885 1362 aaPredicted RBP20.6■□□□□ 0.89
DDX56-201ENST00000258772 PRAG1Q86YV5 1406 aa20.6■□□□□ 0.89
DDX56-201ENST00000258772 MAST1Q9Y2H9 1570 aa20.59■□□□□ 0.89
DDX56-201ENST00000258772 TRPM1Q7Z4N2 1603 aa20.59■□□□□ 0.89
DDX56-201ENST00000258772 LRPPRCP42704 1394 aaKnown RBP20.59■□□□□ 0.89
DDX56-201ENST00000258772 UNC13BO14795 1591 aa20.58■□□□□ 0.88
DDX56-201ENST00000258772 ARHGAP5Q13017 1502 aa20.57■□□□□ 0.88
DDX56-201ENST00000258772 TTC37Q6PGP7 1564 aa20.57■□□□□ 0.88
DDX56-201ENST00000258772 PLA2R1Q13018 1463 aa20.57■□□□□ 0.88
DDX56-201ENST00000258772 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.57■□□□□ 0.88
DDX56-201ENST00000258772 CHD1O14646 1710 aa20.56■□□□□ 0.88
DDX56-201ENST00000258772 RGL3Q3MIN7 710 aa20.56■□□□□ 0.88
DDX56-201ENST00000258772 SENP3-EIF4A1A0A087X0R7 540 aa20.55■□□□□ 0.88
DDX56-201ENST00000258772 NBPF1Q3BBV0 1214 aa20.54■□□□□ 0.88
DDX56-201ENST00000258772 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.54■□□□□ 0.882e-7■■□□□ 11.7
DDX56-201ENST00000258772 SHROOM2Q13796 1616 aa20.53■□□□□ 0.88
DDX56-201ENST00000258772 GPRASP1Q5JY77 1395 aa20.53■□□□□ 0.88
DDX56-201ENST00000258772 A2MP01023 1474 aa20.52■□□□□ 0.88
DDX56-201ENST00000258772 PLXNC1O60486 1568 aa20.52■□□□□ 0.88
DDX56-201ENST00000258772 IQGAP3Q86VI3 1631 aa20.52■□□□□ 0.87
DDX56-201ENST00000258772 MYO5CQ9NQX4 1742 aa20.51■□□□□ 0.87
DDX56-201ENST00000258772 PLEKHH2Q8IVE3 1493 aa20.51■□□□□ 0.87
DDX56-201ENST00000258772 PARD3Q8TEW0 1356 aa20.5■□□□□ 0.87
DDX56-201ENST00000258772 PER1O15534 1290 aaPredicted RBP20.49■□□□□ 0.87
DDX56-201ENST00000258772 NLRP13Q86W25 1043 aa20.49■□□□□ 0.87
DDX56-201ENST00000258772 ABCC2Q92887 1545 aa20.49■□□□□ 0.87
DDX56-201ENST00000258772 LAMC1P11047 1609 aa20.48■□□□□ 0.87
DDX56-201ENST00000258772 CCDC136Q96JN2 1154 aa20.48■□□□□ 0.87
DDX56-201ENST00000258772 PRDM15P57071 1507 aaPredicted RBP20.47■□□□□ 0.87
DDX56-201ENST00000258772 DUOX2Q9NRD8 1548 aa20.47■□□□□ 0.87
DDX56-201ENST00000258772 TESK2Q96S53 571 aa20.46■□□□□ 0.87
DDX56-201ENST00000258772 ATP10AO60312 1499 aa20.46■□□□□ 0.87
DDX56-201ENST00000258772 ERCC6L2Q5T890 1561 aa20.45■□□□□ 0.86
DDX56-201ENST00000258772 COL17A1Q9UMD9 1497 aaPredicted RBP20.45■□□□□ 0.86
DDX56-201ENST00000258772 MAGI2Q86UL8 1455 aa20.44■□□□□ 0.86
DDX56-201ENST00000258772 WASHC2CQ9Y4E1 1318 aa20.44■□□□□ 0.86
DDX56-201ENST00000258772 ERICH6Q7L0X2 663 aa20.43■□□□□ 0.86
DDX56-201ENST00000258772 ERBINQ96RT1 1412 aa20.43■□□□□ 0.86
DDX56-201ENST00000258772 EIF2AK4Q9P2K8 1649 aaKnown RBP20.43■□□□□ 0.86
DDX56-201ENST00000258772 DISP3Q9P2K9 1392 aa20.42■□□□□ 0.86
DDX56-201ENST00000258772 PLCH2O75038 1416 aa20.42■□□□□ 0.86
DDX56-201ENST00000258772 EFCAB2Q5VUJ9 269 aa20.39■□□□□ 0.86
DDX56-201ENST00000258772 PDE3BQ13370 1112 aa20.39■□□□□ 0.85
DDX56-201ENST00000258772 PANK3Q9H999 370 aa20.38■□□□□ 0.85
DDX56-201ENST00000258772 RRP1P56182 461 aaKnown RBP20.38■□□□□ 0.85
DDX56-201ENST00000258772 TMF1P82094 1093 aa20.38■□□□□ 0.85
DDX56-201ENST00000258772 SALL2Q9Y467 1007 aaPredicted RBP20.37■□□□□ 0.85
DDX56-201ENST00000258772 CC2D1BQ5T0F9 858 aaKnown RBP20.37■□□□□ 0.85
DDX56-201ENST00000258772 RCAN3Q9UKA8 241 aa20.36■□□□□ 0.85
DDX56-201ENST00000258772 ZCCHC11Q5TAX3 1644 aaKnown RBP20.35■□□□□ 0.85
DDX56-201ENST00000258772 ABCC1P33527 1531 aa20.34■□□□□ 0.85
DDX56-201ENST00000258772 TRAPPC8Q9Y2L5 1435 aa20.34■□□□□ 0.85
DDX56-201ENST00000258772 INSRP06213 1382 aa20.34■□□□□ 0.85
DDX56-201ENST00000258772 RNF17Q9BXT8 1623 aaKnown RBP20.33■□□□□ 0.85
DDX56-201ENST00000258772 ZMYM4Q5VZL5 1548 aa20.31■□□□□ 0.84
DDX56-201ENST00000258772 UHRF1BP1LA0JNW5 1464 aa20.31■□□□□ 0.84
DDX56-201ENST00000258772 EXOC6Q8TAG9 804 aa20.3■□□□□ 0.84
DDX56-201ENST00000258772 CDCA7LQ96GN5 454 aa20.3■□□□□ 0.84
DDX56-201ENST00000258772 BLMP54132 1417 aaPredicted RBP20.29■□□□□ 0.84
DDX56-201ENST00000258772 SPAG9O60271 1321 aaKnown RBP20.28■□□□□ 0.84
DDX56-201ENST00000258772 MADDQ8WXG6 1647 aa20.27■□□□□ 0.84
DDX56-201ENST00000258772 RTEL1-TNFRSF6BF6WH68 1400 aa20.27■□□□□ 0.84
DDX56-201ENST00000258772 AFAP1Q8N556 730 aa20.26■□□□□ 0.83
DDX56-201ENST00000258772 PRKCSHP14314 528 aaPredicted RBP20.25■□□□□ 0.83
DDX56-201ENST00000258772 NOP58Q9Y2X3 529 aaKnown RBP20.25■□□□□ 0.83
DDX56-201ENST00000258772 WDR7Q9Y4E6 1490 aa20.25■□□□□ 0.83
DDX56-201ENST00000258772 IQGAP1P46940 1657 aa20.25■□□□□ 0.83
DDX56-201ENST00000258772 STAC3Q96MF2 364 aa20.25■□□□□ 0.83
DDX56-201ENST00000258772 TRPM2O94759 1503 aa20.24■□□□□ 0.83
DDX56-201ENST00000258772 CLASP1Q7Z460 1538 aa20.24■□□□□ 0.83
DDX56-201ENST00000258772 PTPRTO14522 1441 aa20.23■□□□□ 0.83
DDX56-201ENST00000258772 CEP152O94986 1710 aa20.23■□□□□ 0.83
DDX56-201ENST00000258772 SPHKAPQ2M3C7 1700 aa20.23■□□□□ 0.83
DDX56-201ENST00000258772 ARAP3Q8WWN8 1544 aa20.22■□□□□ 0.83
DDX56-201ENST00000258772 KNSTRNQ9Y448 316 aa20.22■□□□□ 0.83
DDX56-201ENST00000258772 ZFYVE16Q7Z3T8 1539 aa20.21■□□□□ 0.83
DDX56-201ENST00000258772 ANP32AP39687 249 aaKnown RBP20.21■□□□□ 0.83
DDX56-201ENST00000258772 ADAMTS8Q9UP79 889 aa20.2■□□□□ 0.82
DDX56-201ENST00000258772 SCAPERQ9BY12 1400 aa20.2■□□□□ 0.82
DDX56-201ENST00000258772 CDCA8Q53HL2 280 aa20.2■□□□□ 0.82
DDX56-201ENST00000258772 SCAF11Q99590 1463 aaKnown RBP20.19■□□□□ 0.82
DDX56-201ENST00000258772 DEPDC5O75140 1603 aa20.19■□□□□ 0.82
DDX56-201ENST00000258772 CLTCL1P53675 1640 aa20.19■□□□□ 0.82
DDX56-201ENST00000258772 PAK3O75914 559 aaPredicted RBP20.19■□□□□ 0.82
DDX56-201ENST00000258772 IPO9Q96P70 1041 aaKnown RBP20.19■□□□□ 0.82
DDX56-201ENST00000258772 AMER1Q5JTC6 1135 aaPredicted RBP20.19■□□□□ 0.82
DDX56-201ENST00000258772 TCERG1O14776 1098 aaKnown RBP20.18■□□□□ 0.82
DDX56-201ENST00000258772 PPP2R1AP30153 589 aa20.18■□□□□ 0.82
DDX56-201ENST00000258772 TET3O43151 1660 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms