RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Nap1l3Q794H2 544 aa20.36■□□□□ 0.85
Ccdc88a-201ENSMUST00000040182 Kif7B7ZNG0 1348 aa20.36■□□□□ 0.85
Ccdc88a-201ENSMUST00000040182 Gtf3c3Q3TMP1 882 aa20.36■□□□□ 0.85
Ccdc88a-201ENSMUST00000040182 Ddx11Q6AXC6 880 aa20.36■□□□□ 0.85
Ccdc88a-201ENSMUST00000040182 GorabQ8BRM2 368 aa20.35■□□□□ 0.85
Ccdc88a-201ENSMUST00000040182 CrebrfQ8CDG5 640 aaKnown RBP20.35■□□□□ 0.85
Ccdc88a-201ENSMUST00000040182 Hmgn5Q9JL35 406 aa20.35■□□□□ 0.85
Ccdc88a-201ENSMUST00000040182 Pds5bQ4VA53 1446 aaKnown RBP20.35■□□□□ 0.85
Ccdc88a-201ENSMUST00000040182 MyclP10166 368 aa20.35■□□□□ 0.85
Ccdc88a-201ENSMUST00000040182 Smg6P61406 1418 aaKnown RBP20.34■□□□□ 0.85
Ccdc88a-201ENSMUST00000040182 Gm21969J3QJZ1 289 aa20.34■□□□□ 0.85
Ccdc88a-201ENSMUST00000040182 SlkO54988 1233 aa20.34■□□□□ 0.85
Ccdc88a-201ENSMUST00000040182 Kif3aP28741 701 aa20.34■□□□□ 0.85
Ccdc88a-201ENSMUST00000040182 Gpatch11Q3UFS4 262 aa20.34■□□□□ 0.85
Ccdc88a-201ENSMUST00000040182 Fbxo2Q80UW2 297 aa20.33■□□□□ 0.85
Ccdc88a-201ENSMUST00000040182 Chaf1aQ9QWF0 911 aa20.33■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Rock1P70335 1354 aa20.31■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 CenpjQ569L8 1344 aa20.31■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Ksr2Q3UVC0 959 aa20.31■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Sh3bgrQ9WUZ7 214 aa20.31■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Ralbp1Q62172 648 aa20.3■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Chmp3Q9CQ10 224 aa20.3■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Mphosph9A6H5Y1 991 aa20.3■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Hap1O35668 628 aa20.3■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Cplx2P84086 134 aa20.3■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Srcin1Q9QWI6 1250 aa20.3■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Nup155Q99P88 1391 aaKnown RBP20.29■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Casq1O09165 405 aa20.29■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Znhit6Q3UFB2 460 aaKnown RBP20.29■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Ccdc173A0JLY1 547 aa20.29■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Anp32eP97822 260 aaKnown RBP20.28■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 KinQ8K339 391 aa20.28■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Trak1Q6PD31 939 aa20.28■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Gcom1E9PZ54 550 aa20.28■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 MyzapQ3UIJ9 466 aa20.28■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Kif16bB1AVY7 1312 aa20.27■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 EzrP26040 586 aaKnown RBP20.27■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Dcaf11Q91VU6 549 aa20.27■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Cwc15Q9JHS9 229 aaKnown RBP20.27■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Kri1Q8VDQ9 704 aaKnown RBP20.27■□□□□ 0.84
Ccdc88a-201ENSMUST00000040182 Gabpb2P81069 414 aa20.27■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Cluap1Q8R3P7 413 aa20.27■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Chmp4cQ9D7F7 232 aa20.27■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Rpap1Q80TE0 1409 aa20.26■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Odf2A3KGV1 830 aaKnown RBP20.26■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 CalrP14211 416 aaKnown RBP20.26■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Gripap1Q8VD04 806 aa20.26■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Isy1Q69ZQ2 285 aaKnown RBP20.25■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Ciz1Q8VEH2 845 aa20.25■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Rufy1Q8BIJ7 712 aa20.25■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Kif3cO35066 796 aa20.24■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Kif4P33174 1231 aa20.24■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Lemd3Q9WU40 921 aa20.24■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Rnf20Q5DTM8 973 aa20.24■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Smc4Q8CG47 1286 aa20.23■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 PhaxQ9JJT9 385 aaKnown RBP20.22■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Dctn1O08788 1281 aa20.22■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Ankrd36D3Z4K0 1415 aa20.22■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Dhx8A2A4P0 1244 aaKnown RBP20.22■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Birc3O08863 600 aa20.22■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Vps53Q8CCB4 832 aa20.22■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 NaspQ99MD9 773 aaKnown RBP20.22■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Crybg2B7ZCC2 1516 aa20.21■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Utp3Q9JI13 469 aaKnown RBP20.21■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 Psme1P97371 249 aa20.21■□□□□ 0.83
Ccdc88a-201ENSMUST00000040182 AknaQ80VW7 1404 aa20.2■□□□□ 0.82
Ccdc88a-201ENSMUST00000040182 Aebp1Q640N1 1128 aa20.2■□□□□ 0.82
Ccdc88a-201ENSMUST00000040182 Krt82Q99M74 516 aa20.19■□□□□ 0.82
Ccdc88a-201ENSMUST00000040182 Gpatch3Q8BIY1 525 aa20.18■□□□□ 0.82
Ccdc88a-201ENSMUST00000040182 Stk26Q99JT2 416 aa20.18■□□□□ 0.82
Ccdc88a-201ENSMUST00000040182 Znf330Q922H9 316 aa20.18■□□□□ 0.82
Ccdc88a-201ENSMUST00000040182 Ppm1eQ80TL0 749 aa20.18■□□□□ 0.82
Ccdc88a-201ENSMUST00000040182 CrbnQ8C7D2 445 aa20.18■□□□□ 0.82
Ccdc88a-201ENSMUST00000040182 Smarca2Q6DIC0 1577 aa20.17■□□□□ 0.82
Ccdc88a-201ENSMUST00000040182 WrnO09053 1401 aa20.17■□□□□ 0.82
Ccdc88a-201ENSMUST00000040182 Usp47Q8BY87 1376 aa20.16■□□□□ 0.82
Ccdc88a-201ENSMUST00000040182 Ap3b2Q9JME5 1082 aa20.15■□□□□ 0.82
Ccdc88a-201ENSMUST00000040182 Tnnt1O88346 262 aa20.15■□□□□ 0.82
Ccdc88a-201ENSMUST00000040182 Cchcr1Q8K2I2 770 aa20.15■□□□□ 0.82
Ccdc88a-201ENSMUST00000040182 Plin1Q8CGN5 517 aa20.14■□□□□ 0.82
Ccdc88a-201ENSMUST00000040182 Pdcl3Q8BVF2 240 aa20.14■□□□□ 0.82
Ccdc88a-201ENSMUST00000040182 Rabep1O35551 862 aa20.14■□□□□ 0.81
Ccdc88a-201ENSMUST00000040182 Cc2d2aQ8CFW7 1633 aa20.14■□□□□ 0.81
Ccdc88a-201ENSMUST00000040182 Tceal9Q9DD24 104 aa20.14■□□□□ 0.81
Ccdc88a-201ENSMUST00000040182 Cplx1P63040 134 aa20.13■□□□□ 0.81
Ccdc88a-201ENSMUST00000040182 Rec8Q8C5S7 591 aa20.13■□□□□ 0.81
Ccdc88a-201ENSMUST00000040182 Stk31Q99MW1 1018 aa20.13■□□□□ 0.81
Ccdc88a-201ENSMUST00000040182 Taok2Q6ZQ29 1240 aa20.13■□□□□ 0.81
Ccdc88a-201ENSMUST00000040182 Ncoa2Q61026 1462 aa20.13■□□□□ 0.81
Ccdc88a-201ENSMUST00000040182 Ccnb3Q810T2 1396 aa20.13■□□□□ 0.81
Ccdc88a-201ENSMUST00000040182 HmmrQ00547 794 aaKnown RBP20.12■□□□□ 0.81
Ccdc88a-201ENSMUST00000040182 Atl3Q91YH5 541 aa20.12■□□□□ 0.81
Ccdc88a-201ENSMUST00000040182 Ccdc88bQ4QRL3 1481 aa20.12■□□□□ 0.81
Ccdc88a-201ENSMUST00000040182 Necab1Q8BG18 352 aa20.12■□□□□ 0.81
Ccdc88a-201ENSMUST00000040182 Txndc2Q6P902 515 aa20.11■□□□□ 0.81
Ccdc88a-201ENSMUST00000040182 Smarca4Q3TKT4 1613 aaKnown RBP20.11■□□□□ 0.81
Ccdc88a-201ENSMUST00000040182 Slc4a10Q5DTL9 1118 aa20.1■□□□□ 0.81
Ccdc88a-201ENSMUST00000040182 Ubxn4Q8VCH8 506 aa20.09■□□□□ 0.81
Ccdc88a-201ENSMUST00000040182 Tsen2Q6P7W5 460 aa20.09■□□□□ 0.81
Ccdc88a-201ENSMUST00000040182 Ccdc43Q9CR29 222 aaKnown RBP20.09■□□□□ 0.81
Retrieved 100 of 22,080 RNA–protein pairs in 14 ms