RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 Eif4g3Q80XI3 1579 aaKnown RBP22.65■■□□□ 1.22
Ctcf-201ENSMUST00000005841 PxdnQ3UQ28 1475 aa22.64■■□□□ 1.21
Ctcf-201ENSMUST00000005841 Rrbp1Q99PL5 1605 aaKnown RBP22.62■■□□□ 1.21
Ctcf-201ENSMUST00000005841 Plcd4Q8K3R3 807 aa22.62■■□□□ 1.21
Ctcf-201ENSMUST00000005841 Kcnn1Q9EQR3 537 aa22.62■■□□□ 1.21
Ctcf-201ENSMUST00000005841 Kdm2bQ6P1G2 1309 aa22.62■■□□□ 1.21
Ctcf-201ENSMUST00000005841 Zfp444Q3TDV8 331 aaKnown RBP22.61■■□□□ 1.21
Ctcf-201ENSMUST00000005841 Zcchc11B2RX14 1644 aaKnown RBP22.6■■□□□ 1.21
Ctcf-201ENSMUST00000005841 Polr3aB2RXC6 1390 aa22.58■■□□□ 1.21
Ctcf-201ENSMUST00000005841 Asxl1P59598 1514 aa22.58■■□□□ 1.21
Ctcf-201ENSMUST00000005841 Mapkbp1Q6NS57 1503 aa22.57■■□□□ 1.2
Ctcf-201ENSMUST00000005841 Tex14Q7M6U3 1450 aa22.57■■□□□ 1.2
Ctcf-201ENSMUST00000005841 Ccdc141E9Q8Q6 1531 aa22.57■■□□□ 1.2
Ctcf-201ENSMUST00000005841 Ttll5Q8CHB8 1328 aa22.56■■□□□ 1.2
Ctcf-201ENSMUST00000005841 Abcc2Q8VI47 1543 aa22.55■■□□□ 1.2
Ctcf-201ENSMUST00000005841 Rundc1Q0VDN7 615 aa22.54■■□□□ 1.2
Ctcf-201ENSMUST00000005841 Lrriq1Q0P5X1 1673 aa22.54■■□□□ 1.2
Ctcf-201ENSMUST00000005841 Mroh2aD3Z750 1679 aa22.54■■□□□ 1.2
Ctcf-201ENSMUST00000005841 Ttll13A4Q9F6 804 aa22.53■■□□□ 1.2
Ctcf-201ENSMUST00000005841 ChgaP26339 463 aaKnown RBP22.53■■□□□ 1.2
Ctcf-201ENSMUST00000005841 Fmn2Q9JL04 1578 aa22.52■■□□□ 1.2
Ctcf-201ENSMUST00000005841 Ipo4Q8VI75 1082 aa22.52■■□□□ 1.2
Ctcf-201ENSMUST00000005841 Npm1Q61937 292 aaKnown RBP22.52■■□□□ 1.2
Ctcf-201ENSMUST00000005841 Rpgrip1lQ8CG73 1264 aa22.51■■□□□ 1.19
Ctcf-201ENSMUST00000005841 Pbrm1Q8BSQ9 1634 aaKnown RBP22.5■■□□□ 1.19
Ctcf-201ENSMUST00000005841 PtprgQ05909 1442 aa22.5■■□□□ 1.19
Ctcf-201ENSMUST00000005841 Rock1P70335 1354 aa22.49■■□□□ 1.19
Ctcf-201ENSMUST00000005841 Ttbk1Q6PCN3 1308 aa22.49■■□□□ 1.19
Ctcf-201ENSMUST00000005841 Arhgap31A6X8Z5 1425 aa22.47■■□□□ 1.19
Ctcf-201ENSMUST00000005841 Adamts13Q769J6 1426 aa22.45■■□□□ 1.18
Ctcf-201ENSMUST00000005841 Arid4bA2CG63 1314 aaKnown RBP22.44■■□□□ 1.18
Ctcf-201ENSMUST00000005841 Card11Q8CIS0 1159 aa22.41■■□□□ 1.18
Ctcf-201ENSMUST00000005841 Ube2uB1AUC4 352 aa22.4■■□□□ 1.18
Ctcf-201ENSMUST00000005841 Mak16Q8BGS0 296 aaKnown RBP22.4■■□□□ 1.18
Ctcf-201ENSMUST00000005841 Shroom2A2ALU4 1481 aa22.4■■□□□ 1.18
Ctcf-201ENSMUST00000005841 Pdcd11Q6NS46 1862 aaKnown RBP22.39■■□□□ 1.18
Ctcf-201ENSMUST00000005841 Zscan21Q07231 555 aa22.39■■□□□ 1.17
Ctcf-201ENSMUST00000005841 Mast1Q9R1L5 1570 aa22.38■■□□□ 1.17
Ctcf-201ENSMUST00000005841 Lrrc9Q8CDN9 1456 aa22.38■■□□□ 1.17
Ctcf-201ENSMUST00000005841 Fam208aQ69ZR9 1610 aaKnown RBP22.38■■□□□ 1.17
Ctcf-201ENSMUST00000005841 Adgrl2Q8JZZ7 1487 aa22.37■■□□□ 1.17
Ctcf-201ENSMUST00000005841 Mlh3A0A1Y7VMP7 1443 aa22.37■■□□□ 1.17
Ctcf-201ENSMUST00000005841 Prex2Q3LAC4 1598 aa22.37■■□□□ 1.17
Ctcf-201ENSMUST00000005841 Neurl4Q5NCX5 1563 aa22.37■■□□□ 1.17
Ctcf-201ENSMUST00000005841 Nup160Q9Z0W3 1402 aaKnown RBP22.36■■□□□ 1.17
Ctcf-201ENSMUST00000005841 Q7TT23 1179 aa22.36■■□□□ 1.17
Ctcf-201ENSMUST00000005841 Ppip5k1A2ARP1 1436 aa22.36■■□□□ 1.17
Ctcf-201ENSMUST00000005841 WrnO09053 1401 aa22.35■■□□□ 1.17
Ctcf-201ENSMUST00000005841 Amer1Q7TS75 1132 aa22.35■■□□□ 1.17
Ctcf-201ENSMUST00000005841 Cfap74Q3UY96 1578 aa22.35■■□□□ 1.17
Ctcf-201ENSMUST00000005841 Mre11Q61216 706 aa22.35■■□□□ 1.17
Ctcf-201ENSMUST00000005841 Caskin1Q6P9K8 1431 aa22.34■■□□□ 1.17
Ctcf-201ENSMUST00000005841 Pola1P33609 1465 aa22.34■■□□□ 1.17
Ctcf-201ENSMUST00000005841 Robo2Q7TPD3 1470 aa22.33■■□□□ 1.17
Ctcf-201ENSMUST00000005841 Ubl4bQ9CQ84 188 aa22.33■■□□□ 1.16
Ctcf-201ENSMUST00000005841 Mbd3Q9Z2D8 285 aaKnown RBP22.33■■□□□ 1.16
Ctcf-201ENSMUST00000005841 Rgl3Q3UYI5 709 aa22.32■■□□□ 1.16
Ctcf-201ENSMUST00000005841 Sbno1Q689Z5 1390 aa22.31■■□□□ 1.16
Ctcf-201ENSMUST00000005841 Tmc1Q8R4P5 757 aa22.3■■□□□ 1.16
Ctcf-201ENSMUST00000005841 Hecw1Q8K4P8 1604 aa22.3■■□□□ 1.16
Ctcf-201ENSMUST00000005841 Sart3Q9JLI8 962 aaKnown RBP22.29■■□□□ 1.16
Ctcf-201ENSMUST00000005841 Gm32742A0A1B0GT42 1604 aa22.29■■□□□ 1.16
Ctcf-201ENSMUST00000005841 Magi1Q6RHR9 1471 aa22.29■■□□□ 1.16
Ctcf-201ENSMUST00000005841 Cc2d2bA0A286YDU8 1405 aa22.29■■□□□ 1.16
Ctcf-201ENSMUST00000005841 Trak1Q6PD31 939 aa22.27■■□□□ 1.16
Ctcf-201ENSMUST00000005841 Atf7ipQ7TT18 1306 aa22.26■■□□□ 1.15
Ctcf-201ENSMUST00000005841 Smc5Q8CG46 1101 aaKnown RBP22.26■■□□□ 1.15
Ctcf-201ENSMUST00000005841 PrxO55103 1391 aa22.26■■□□□ 1.15
Ctcf-201ENSMUST00000005841 Gm16486A0A1D5RMD1 1434 aa22.26■■□□□ 1.15
Ctcf-201ENSMUST00000005841 Cep170Q6A065 1588 aa22.24■■□□□ 1.15
Ctcf-201ENSMUST00000005841 Nup155Q99P88 1391 aaKnown RBP22.24■■□□□ 1.15
Ctcf-201ENSMUST00000005841 NudcO35685 332 aaKnown RBP22.24■■□□□ 1.15
Ctcf-201ENSMUST00000005841 Fam163aQ8CAA5 168 aa22.23■■□□□ 1.15
Ctcf-201ENSMUST00000005841 Itsn2Q9Z0R6 1659 aa22.22■■□□□ 1.15
Ctcf-201ENSMUST00000005841 Kif16bB1AVY7 1312 aa22.21■■□□□ 1.15
Ctcf-201ENSMUST00000005841 Myom1Q62234 1667 aaKnown RBP22.21■■□□□ 1.15
Ctcf-201ENSMUST00000005841 Znf521Q6KAS7 1311 aa22.21■■□□□ 1.15
Ctcf-201ENSMUST00000005841 Ssh2Q5SW75 1423 aa22.21■■□□□ 1.15
Ctcf-201ENSMUST00000005841 Trappc8E9PWG2 1437 aa22.2■■□□□ 1.14
Ctcf-201ENSMUST00000005841 Tdrd9Q14BI7 1383 aa22.2■■□□□ 1.14
Ctcf-201ENSMUST00000005841 Mroh3A0A1D5RM54 893 aa22.19■■□□□ 1.14
Ctcf-201ENSMUST00000005841 Usp19Q3UJD6 1360 aa22.18■■□□□ 1.14
Ctcf-201ENSMUST00000005841 EspnQ9ET47 871 aa22.18■■□□□ 1.14
Ctcf-201ENSMUST00000005841 Atp7aQ64430 1491 aa22.17■■□□□ 1.14
Ctcf-201ENSMUST00000005841 Plekhh1Q80TI1 1356 aa22.17■■□□□ 1.14
Ctcf-201ENSMUST00000005841 Tulp4Q9JIL5 1547 aa22.16■■□□□ 1.14
Ctcf-201ENSMUST00000005841 Dnai1Q8C0M8 701 aa22.16■■□□□ 1.14
Ctcf-201ENSMUST00000005841 Rnf17Q99MV7 1640 aa22.15■■□□□ 1.14
Ctcf-201ENSMUST00000005841 Pknox2Q8BG99 474 aa22.15■■□□□ 1.14
Ctcf-201ENSMUST00000005841 Col17a1Q07563 1470 aa22.14■■□□□ 1.14
Ctcf-201ENSMUST00000005841 Abca17E9PX95 1733 aa22.12■■□□□ 1.13
Ctcf-201ENSMUST00000005841 CanxP35564 591 aaKnown RBP22.12■■□□□ 1.13
Ctcf-201ENSMUST00000005841 Dnmt1P13864 1620 aaKnown RBP22.12■■□□□ 1.13
Ctcf-201ENSMUST00000005841 Ppp1r9bQ6R891 817 aaKnown RBP22.12■■□□□ 1.13
Ctcf-201ENSMUST00000005841 Grwd1Q810D6 446 aaKnown RBP22.11■■□□□ 1.13
Ctcf-201ENSMUST00000005841 AnkarA2RT91 1465 aa22.11■■□□□ 1.13
Ctcf-201ENSMUST00000005841 Pdcl3Q8BVF2 240 aa22.1■■□□□ 1.13
Ctcf-201ENSMUST00000005841 Cdc42bpbQ7TT50 1713 aa22.1■■□□□ 1.13
Ctcf-201ENSMUST00000005841 Uggt2E9Q4X2 1504 aa22.09■■□□□ 1.13
Ctcf-201ENSMUST00000005841 Kdm5aQ3UXZ9 1690 aa22.09■■□□□ 1.13
Retrieved 100 of 22,080 RNA–protein pairs in 39.8 ms