RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSH4	YKL124W	SDS22	P36047	338 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	SCO2	P38072	301 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	YBL029W	P38201	376 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	PET100	P38958	111 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	UTP25	P40498	721 aa	Known RBP	4.11	□□□□□ -1.75
SSH4	YKL124W	YFL066C	P43538	392 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	CAF16	P43569	289 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	ALB1	P47019	175 aa	Predicted RBP	4.11	□□□□□ -1.75
SSH4	YKL124W	LOH1	P47055	219 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	PUS4	P48567	403 aa	Known RBP	4.11	□□□□□ -1.75
SSH4	YKL124W	ISU1	Q03020	165 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	MSC1	Q03104	513 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	SMA2	Q04658	369 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	ATG17	Q06410	417 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	YPR091C	Q06833	770 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	GPN2	Q08726	347 aa	Predicted RBP	4.11	□□□□□ -1.75
SSH4	YKL124W	MLH3	Q12083	715 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	RPS21B	Q3E754	87 aa	Known RBP	4.11	□□□□□ -1.75
SSH4	YKL124W	YPT6	Q99260	215 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	CBP2	P03874	630 aa	Predicted RBP	4.1	□□□□□ -1.75
SSH4	YKL124W	EXO70	P19658	623 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	CDC10	P25342	322 aa	Known RBP	4.1	□□□□□ -1.75
SSH4	YKL124W	PBN1	P25580	416 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	YCR016W	P25617	290 aa	Known RBP	4.1	□□□□□ -1.75
SSH4	YKL124W	ERV1	P27882	189 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	ZIP1	P31111	875 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	SEC17	P32602	292 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	PTC1	P35182	281 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	FAT1	P38225	669 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	POP7	P38291	140 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	STP2	P38704	541 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	WSS1	P38838	269 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	DLD3	P39976	496 aa	Known RBP	4.1	□□□□□ -1.75
SSH4	YKL124W	PCL6	P40038	420 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	GAB1	P41733	394 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	TRS85	P46944	698 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	YJL043W	P47053	257 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	SNX4	P47057	423 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	APS3	P47064	194 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	HAM1	P47119	197 aa	Known RBP	4.1	□□□□□ -1.75
SSH4	YKL124W	YJR141W	P47172	347 aa	Predicted RBP	4.1	□□□□□ -1.75
SSH4	YKL124W	MPP6	P53725	186 aa	Predicted RBP	4.1	□□□□□ -1.75
SSH4	YKL124W	LGE1	Q02796	332 aa	Known RBP	4.1	□□□□□ -1.75
SSH4	YKL124W	MMT1	Q03218	510 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	YDR209C	Q03480	137 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	FMN1	Q03778	218 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	YMR310C	Q04867	317 aa	Predicted RBP	4.1	□□□□□ -1.75
SSH4	YKL124W	RBS1	Q05672	457 aa	Known RBP	4.1	□□□□□ -1.75
SSH4	YKL124W	YLR173W	Q06247	608 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	FDH1	Q08911	376 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	YOS9	Q99220	542 aa		4.1	□□□□□ -1.75
SSH4	YKL124W	AI1	P03875	834 aa		4.09	□□□□□ -1.75
SSH4	YKL124W	YSF3	P0C074	85 aa	Predicted RBP	4.09	□□□□□ -1.75
SSH4	YKL124W	VPS51	P36116	164 aa		4.09	□□□□□ -1.75
SSH4	YKL124W	CHS7	P38843	316 aa		4.09	□□□□□ -1.75
SSH4	YKL124W	YEL057C	P39983	233 aa		4.09	□□□□□ -1.75
SSH4	YKL124W	TED1	P40533	473 aa		4.09	□□□□□ -1.75
SSH4	YKL124W	OTU1	P43558	301 aa		4.09	□□□□□ -1.75
SSH4	YKL124W	SSN8	P47821	323 aa		4.09	□□□□□ -1.75
SSH4	YKL124W	RPS12	P48589	143 aa	Known RBP	4.09	□□□□□ -1.75
SSH4	YKL124W	PXR1	P53335	271 aa	Predicted RBP	4.09	□□□□□ -1.75
SSH4	YKL124W	BSC5	P53755	489 aa		4.09	□□□□□ -1.75
SSH4	YKL124W	SNA4	Q07549	140 aa		4.09	□□□□□ -1.75
SSH4	YKL124W	YDL218W	Q07629	317 aa		4.09	□□□□□ -1.75
SSH4	YKL124W	SGT1	Q08446	395 aa		4.09	□□□□□ -1.75
SSH4	YKL124W	SWT1	Q12104	458 aa		4.09	□□□□□ -1.75
SSH4	YKL124W	YPR071W	Q12346	211 aa		4.09	□□□□□ -1.75
SSH4	YKL124W	YKL018C-A	Q3E7A7	99 aa		4.09	□□□□□ -1.75
SSH4	YKL124W	DAT1	P13483	248 aa	Known RBP	4.09	□□□□□ -1.76
SSH4	YKL124W	STE12	P13574	688 aa		4.09	□□□□□ -1.76
SSH4	YKL124W	CPR2	P23285	205 aa		4.09	□□□□□ -1.76
SSH4	YKL124W	SIP2	P34164	415 aa	Known RBP	4.09	□□□□□ -1.76
SSH4	YKL124W	LHS1	P36016	881 aa		4.09	□□□□□ -1.76
SSH4	YKL124W	AUR1	P36107	401 aa	Predicted RBP	4.09	□□□□□ -1.76
SSH4	YKL124W	SRO77	P38163	1010 aa		4.09	□□□□□ -1.76
SSH4	YKL124W	FES1	P38260	290 aa		4.09	□□□□□ -1.76
SSH4	YKL124W	YMR262W	P38430	313 aa		4.09	□□□□□ -1.76
SSH4	YKL124W	OSH7	P38755	437 aa		4.09	□□□□□ -1.76
SSH4	YKL124W	YER085C	P40058	173 aa		4.09	□□□□□ -1.76
SSH4	YKL124W	SNO3	P43544	222 aa		4.09	□□□□□ -1.76
SSH4	YKL124W	UBC9	P50623	157 aa	Predicted RBP	4.09	□□□□□ -1.76
SSH4	YKL124W	MRK1	P50873	501 aa		4.09	□□□□□ -1.76
SSH4	YKL124W	SEH1	P53011	349 aa	Known RBP	4.09	□□□□□ -1.76
SSH4	YKL124W	YLR460C	P54007	376 aa		4.09	□□□□□ -1.76
SSH4	YKL124W	YSA1	Q01976	231 aa		4.09	□□□□□ -1.76
SSH4	YKL124W	SRL4	Q03085	281 aa		4.09	□□□□□ -1.76
SSH4	YKL124W	GTO3	Q04806	366 aa		4.09	□□□□□ -1.76
SSH4	YKL124W	CYK3	Q07533	885 aa		4.09	□□□□□ -1.76
SSH4	YKL124W	PUS7	Q08647	676 aa	Known RBP	4.09	□□□□□ -1.76
SSH4	YKL124W	SLF1	Q12034	447 aa	Known RBP	4.09	□□□□□ -1.76
SSH4	YKL124W	UTR1	P21373	530 aa		4.08	□□□□□ -1.76
SSH4	YKL124W	ARO4	P32449	370 aa	Known RBP	4.08	□□□□□ -1.76
SSH4	YKL124W	SNU114	P36048	1008 aa	Known RBP	4.08	□□□□□ -1.76
SSH4	YKL124W	GPI16	P38875	610 aa		4.08	□□□□□ -1.76
SSH4	YKL124W	MNN9	P39107	395 aa	Known RBP	4.08	□□□□□ -1.76
SSH4	YKL124W	AIM2	P39721	246 aa		4.08	□□□□□ -1.76
SSH4	YKL124W	YEL020C	P39994	560 aa		4.08	□□□□□ -1.76
SSH4	YKL124W	ZRG8	P40021	1076 aa		4.08	□□□□□ -1.76
SSH4	YKL124W	PHB1	P40961	287 aa		4.08	□□□□□ -1.76
SSH4	YKL124W	PMT4	P46971	762 aa		4.08	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 31.2 ms