RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeastyeast

Gene VPS29, Length 849 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS29YHR012W CLB2P24869 491 aa4.34□□□□□ -1.71
VPS29YHR012W ATP7P30902 174 aa4.34□□□□□ -1.71
VPS29YHR012W TOA1P32773 286 aa4.34□□□□□ -1.71
VPS29YHR012W MAE1P36013 669 aaKnown RBP4.34□□□□□ -1.71
VPS29YHR012W ROT2P38138 954 aa4.34□□□□□ -1.71
VPS29YHR012W IST2P38250 946 aa4.34□□□□□ -1.71
VPS29YHR012W MTC4P38335 694 aaKnown RBP4.34□□□□□ -1.71
VPS29YHR012W YHR180WP38868 163 aa4.34□□□□□ -1.71
VPS29YHR012W MET28P40573 187 aa4.34□□□□□ -1.71
VPS29YHR012W ARF3P40994 183 aaRIP-Chip data4.34□□□□□ -1.71 RIP-Chip
VPS29YHR012W IDP2P41939 412 aa4.34□□□□□ -1.71
VPS29YHR012W RSN1Q03516 953 aa4.34□□□□□ -1.71
VPS29YHR012W RVB1Q03940 463 aaKnown RBP4.34□□□□□ -1.71
VPS29YHR012W RAD33Q04231 177 aa4.34□□□□□ -1.71
VPS29YHR012W SPO77Q06134 477 aa4.34□□□□□ -1.71
VPS29YHR012W BRX1Q08235 291 aaKnown RBP4.34□□□□□ -1.71
VPS29YHR012W YPL225WQ08971 146 aaKnown RBP4.34□□□□□ -1.71
VPS29YHR012W YDL180WQ12301 547 aa4.34□□□□□ -1.71
VPS29YHR012W NPC2Q12408 173 aa4.34□□□□□ -1.71
VPS29YHR012W YAL064W-BO13512 126 aa4.33□□□□□ -1.72
VPS29YHR012W ATP6P00854 259 aa4.33□□□□□ -1.72
VPS29YHR012W MF(ALPHA)1P01149 165 aa4.33□□□□□ -1.72
VPS29YHR012W SUI3P09064 285 aaKnown RBP4.33□□□□□ -1.72
VPS29YHR012W RPL35AP0CX84 120 aaKnown RBP4.33□□□□□ -1.72
VPS29YHR012W RPL35BP0CX85 120 aaKnown RBP4.33□□□□□ -1.72
VPS29YHR012W GPX1P36014 167 aa4.33□□□□□ -1.72
VPS29YHR012W TDP1P38319 544 aa4.33□□□□□ -1.72
VPS29YHR012W YHL044WP38727 235 aa4.33□□□□□ -1.72
VPS29YHR012W QDR2P40474 542 aa4.33□□□□□ -1.72
VPS29YHR012W POP1P41812 875 aa4.33□□□□□ -1.72
VPS29YHR012W MOT3P54785 490 aaKnown RBP4.33□□□□□ -1.72
VPS29YHR012W SVL3Q03088 825 aaKnown RBP4.33□□□□□ -1.72
VPS29YHR012W FMN1Q03778 218 aa4.33□□□□□ -1.72
VPS29YHR012W HSP31Q04432 237 aa4.33□□□□□ -1.72
VPS29YHR012W VBA4Q04602 768 aaKnown RBP4.33□□□□□ -1.72
VPS29YHR012W GGA1Q06336 557 aa4.33□□□□□ -1.72
VPS29YHR012W MRL1Q06815 381 aa4.33□□□□□ -1.72
VPS29YHR012W IRC19Q07843 230 aa4.33□□□□□ -1.72
VPS29YHR012W NTG2Q08214 380 aa4.33□□□□□ -1.72
VPS29YHR012W DCI1Q08558 271 aa4.33□□□□□ -1.72
VPS29YHR012W RSA1Q08932 381 aa4.33□□□□□ -1.72
VPS29YHR012W YDL211CQ12121 372 aa4.33□□□□□ -1.72
VPS29YHR012W PEP4P07267 405 aaKnown RBP4.32□□□□□ -1.72
VPS29YHR012W PMR1P13586 950 aa4.32□□□□□ -1.72
VPS29YHR012W CTA1P15202 515 aa4.32□□□□□ -1.72
VPS29YHR012W SCO1P23833 295 aa4.32□□□□□ -1.72
VPS29YHR012W RAD14P28519 371 aa4.32□□□□□ -1.72
VPS29YHR012W SNC1P31109 117 aa4.32□□□□□ -1.72
VPS29YHR012W CYS4P32582 507 aaKnown RBP4.32□□□□□ -1.72
VPS29YHR012W PUB1P32588 453 aaKnown RBP RIP-Chip data4.32□□□□□ -1.72not detected
VPS29YHR012W MRPS5P33759 307 aa4.32□□□□□ -1.72
VPS29YHR012W NUF2P33895 451 aa4.32□□□□□ -1.72
VPS29YHR012W SIP2P34164 415 aaKnown RBP4.32□□□□□ -1.72
VPS29YHR012W HEK2P38199 381 aaKnown RBP RIP-Chip data4.32□□□□□ -1.72not detected
VPS29YHR012W ECM34P38728 170 aa4.32□□□□□ -1.72
VPS29YHR012W NAB3P38996 802 aaKnown RBP RIP-Chip data4.32□□□□□ -1.72not detected
VPS29YHR012W YIL166CP40445 542 aa4.32□□□□□ -1.72
VPS29YHR012W HXT9P40885 567 aa4.32□□□□□ -1.72
VPS29YHR012W SNM1P40993 198 aa4.32□□□□□ -1.72
VPS29YHR012W YFR054CP43622 192 aa4.32□□□□□ -1.72
VPS29YHR012W MTQ1P53944 314 aa4.32□□□□□ -1.72
VPS29YHR012W HXT11P54862 567 aa4.32□□□□□ -1.72
VPS29YHR012W DYN3Q04949 312 aa4.32□□□□□ -1.72
VPS29YHR012W ARV1Q06541 321 aa4.32□□□□□ -1.72
VPS29YHR012W SYO1Q07395 620 aa4.32□□□□□ -1.72
VPS29YHR012W YLR040CQ07988 224 aa4.32□□□□□ -1.72
VPS29YHR012W AVO1Q08236 1176 aa4.32□□□□□ -1.72
VPS29YHR012W MUM3Q08750 479 aa4.32□□□□□ -1.72
VPS29YHR012W YIG1Q08956 461 aa4.32□□□□□ -1.72
VPS29YHR012W APC2Q12440 853 aa4.32□□□□□ -1.72
VPS29YHR012W TFS1P14306 219 aa4.31□□□□□ -1.72
VPS29YHR012W PDA1P16387 420 aaKnown RBP4.31□□□□□ -1.72
VPS29YHR012W ERD2P18414 219 aa4.31□□□□□ -1.72
VPS29YHR012W ASF2P32448 525 aaPredicted RBP4.31□□□□□ -1.72
VPS29YHR012W PDB1P32473 366 aaKnown RBP4.31□□□□□ -1.72
VPS29YHR012W LHP1P33399 275 aaKnown RBP4.31□□□□□ -1.72
VPS29YHR012W CUE2P36075 443 aaKnown RBP4.31□□□□□ -1.72
VPS29YHR012W ARN2P38724 620 aa4.31□□□□□ -1.72
VPS29YHR012W MSS4P38994 779 aa4.31□□□□□ -1.72
VPS29YHR012W ECM1P39715 212 aa4.31□□□□□ -1.72
VPS29YHR012W GAT2P40209 560 aa4.31□□□□□ -1.72
VPS29YHR012W PRE6P40303 254 aaKnown RBP4.31□□□□□ -1.72
VPS29YHR012W RFC4P40339 323 aaKnown RBP4.31□□□□□ -1.72
VPS29YHR012W LAS21P40367 830 aa4.31□□□□□ -1.72
VPS29YHR012W SLS1P42900 643 aa4.31□□□□□ -1.72
VPS29YHR012W IDS2P46958 469 aa4.31□□□□□ -1.72
VPS29YHR012W NUP57P48837 541 aa4.31□□□□□ -1.72
VPS29YHR012W RBG2P53295 368 aaKnown RBP4.31□□□□□ -1.72
VPS29YHR012W YNR068CP53754 272 aa4.31□□□□□ -1.72
VPS29YHR012W ELA1P53861 379 aaPredicted RBP4.31□□□□□ -1.72
VPS29YHR012W SUB1P54000 292 aaKnown RBP4.31□□□□□ -1.72
VPS29YHR012W NAN1Q02931 896 aaKnown RBP4.31□□□□□ -1.72
VPS29YHR012W CTL1Q03220 320 aaKnown RBP4.31□□□□□ -1.72
VPS29YHR012W UGO1Q03327 502 aa4.31□□□□□ -1.72
VPS29YHR012W SCS7Q03529 384 aa4.31□□□□□ -1.72
VPS29YHR012W HAS1Q03532 505 aaKnown RBP4.31□□□□□ -1.72
VPS29YHR012W RRP15Q06511 250 aaPredicted RBP4.31□□□□□ -1.72
VPS29YHR012W PSR1Q07800 427 aa4.31□□□□□ -1.72
VPS29YHR012W THP1Q08231 455 aa4.31□□□□□ -1.72
VPS29YHR012W YPL191CQ08930 360 aa4.31□□□□□ -1.72
Retrieved 100 of 5,963 RNA–protein pairs in 40.3 ms