RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C TOA2P32774 122 aa1.28□□□□□ -2.2
VPS54YDR027C CYM1P32898 989 aa1.28□□□□□ -2.2
VPS54YDR027C RRP1P35178 278 aaPredicted RBP1.28□□□□□ -2.2
VPS54YDR027C PCH2P38126 564 aa1.28□□□□□ -2.2
VPS54YDR027C OSW5P40219 148 aa1.28□□□□□ -2.2
VPS54YDR027C PAN6P40459 309 aa1.28□□□□□ -2.2
VPS54YDR027C SFH5P47008 294 aa1.28□□□□□ -2.2
VPS54YDR027C ABM1P47146 123 aa1.28□□□□□ -2.2
VPS54YDR027C COS1P53822 381 aa1.28□□□□□ -2.2
VPS54YDR027C PRM1P53835 661 aa1.28□□□□□ -2.2
VPS54YDR027C AAD15Q08361 143 aa1.28□□□□□ -2.2
VPS54YDR027C PEX27Q08580 376 aa1.28□□□□□ -2.2
VPS54YDR027C NBL1Q3E7Y6 73 aa1.28□□□□□ -2.2
VPS54YDR027C MYO1P08964 1928 aa1.28□□□□□ -2.2
VPS54YDR027C MOT1P32333 1867 aa1.28□□□□□ -2.2
VPS54YDR027C TRP1P00912 224 aa1.28□□□□□ -2.2
VPS54YDR027C RNA1P11745 407 aaKnown RBP1.28□□□□□ -2.2
VPS54YDR027C YCL068CP25593 260 aa1.28□□□□□ -2.2
VPS54YDR027C RPS0AP32905 252 aaKnown RBP1.28□□□□□ -2.2
VPS54YDR027C ATP3P38077 311 aaKnown RBP1.28□□□□□ -2.2
VPS54YDR027C CHK1P38147 527 aa1.28□□□□□ -2.2
VPS54YDR027C TOS3P43637 560 aa1.28□□□□□ -2.2
VPS54YDR027C RRN9P53437 365 aa1.28□□□□□ -2.2
VPS54YDR027C PRP3Q03338 469 aaPredicted RBP1.28□□□□□ -2.2
VPS54YDR027C CCE1Q03702 353 aa1.28□□□□□ -2.2
VPS54YDR027C AIM33Q04516 312 aa1.28□□□□□ -2.2
VPS54YDR027C AIM45Q12480 344 aaKnown RBP1.28□□□□□ -2.2
VPS54YDR027C CYC3P06182 269 aa1.27□□□□□ -2.21
VPS54YDR027C ATP1P07251 545 aaKnown RBP1.27□□□□□ -2.21
VPS54YDR027C RPS16AP0CX51 143 aaKnown RBP1.27□□□□□ -2.21
VPS54YDR027C RPS16BP0CX52 143 aaKnown RBP1.27□□□□□ -2.21
VPS54YDR027C HSP26P15992 214 aaKnown RBP RIP-Chip data1.27□□□□□ -2.21 RIP-Chip
VPS54YDR027C MUD1P32605 298 aaKnown RBP1.27□□□□□ -2.21
VPS54YDR027C COX13P32799 129 aa1.27□□□□□ -2.21
VPS54YDR027C SRB2P34162 210 aa1.27□□□□□ -2.21
VPS54YDR027C LIN1P38852 340 aaPredicted RBP1.27□□□□□ -2.21
VPS54YDR027C JLP2P40206 208 aa1.27□□□□□ -2.21
VPS54YDR027C MEP1P40260 492 aa1.27□□□□□ -2.21
VPS54YDR027C ATM1P40416 690 aa1.27□□□□□ -2.21
VPS54YDR027C RRP46P53256 223 aaPredicted RBP1.27□□□□□ -2.21
VPS54YDR027C IGO1P53897 168 aa1.27□□□□□ -2.21
VPS54YDR027C YMR181CQ03231 154 aa1.27□□□□□ -2.21
VPS54YDR027C STE23Q06010 1027 aa1.27□□□□□ -2.21
VPS54YDR027C RAX1Q08760 435 aa1.27□□□□□ -2.21
VPS54YDR027C TPT1Q12272 230 aaKnown RBP1.27□□□□□ -2.21
VPS54YDR027C SPO24Q3E752 67 aa1.27□□□□□ -2.21
VPS54YDR027C LAA1P39526 2014 aa1.27□□□□□ -2.21
VPS54YDR027C ARF1P11076 181 aaKnown RBP1.27□□□□□ -2.21
VPS54YDR027C SNA3P14359 133 aa1.27□□□□□ -2.21
VPS54YDR027C DPH5P32469 300 aaPredicted RBP1.27□□□□□ -2.21
VPS54YDR027C DOA1P36037 715 aa1.27□□□□□ -2.21
VPS54YDR027C GPX2P38143 162 aa1.27□□□□□ -2.21
VPS54YDR027C SBE22P38814 852 aa1.27□□□□□ -2.21
VPS54YDR027C SNL1P40548 159 aa1.27□□□□□ -2.21
VPS54YDR027C GPI8P49018 411 aa1.27□□□□□ -2.21
VPS54YDR027C HST1P53685 503 aa1.27□□□□□ -2.21
VPS54YDR027C SMP3Q04174 516 aa1.27□□□□□ -2.21
VPS54YDR027C LDS2Q08218 356 aa1.27□□□□□ -2.21
VPS54YDR027C MDY2Q12285 212 aa1.27□□□□□ -2.21
VPS54YDR027C SWI1P09547 1314 aa1.27□□□□□ -2.21
VPS54YDR027C PAB1P04147 577 aaKnown RBP RIP-Chip data1.26□□□□□ -2.21not detected
VPS54YDR027C MAS1P10507 462 aa1.26□□□□□ -2.21
VPS54YDR027C POX1P13711 748 aa1.26□□□□□ -2.21
VPS54YDR027C HXT2P23585 541 aa1.26□□□□□ -2.21
VPS54YDR027C MSK1P32048 576 aa1.26□□□□□ -2.21
VPS54YDR027C PHA2P32452 334 aa1.26□□□□□ -2.21
VPS54YDR027C YEF1P32622 495 aa1.26□□□□□ -2.21
VPS54YDR027C SPT10P35208 640 aa1.26□□□□□ -2.21
VPS54YDR027C RRF1P38771 230 aa1.26□□□□□ -2.21
VPS54YDR027C SPL2P38839 148 aa1.26□□□□□ -2.21
VPS54YDR027C ALD5P40047 520 aaKnown RBP1.26□□□□□ -2.21
VPS54YDR027C PRM5P40476 318 aa1.26□□□□□ -2.21
VPS54YDR027C RET3P53600 189 aa1.26□□□□□ -2.21
VPS54YDR027C SPR6Q01684 191 aa1.26□□□□□ -2.21
VPS54YDR027C HER2Q03557 464 aa1.26□□□□□ -2.21
VPS54YDR027C YMR310CQ04867 317 aaPredicted RBP1.26□□□□□ -2.21
VPS54YDR027C GAT3Q07928 141 aa1.26□□□□□ -2.21
VPS54YDR027C YRM1Q12340 786 aa1.26□□□□□ -2.21
VPS54YDR027C HIF1Q12373 385 aa1.26□□□□□ -2.21
VPS54YDR027C YOP1Q12402 180 aa1.26□□□□□ -2.21
VPS54YDR027C POL2P21951 2222 aaKnown RBP1.26□□□□□ -2.21
VPS54YDR027C VPS63O13549 108 aa1.26□□□□□ -2.21
VPS54YDR027C THR4P16120 514 aaKnown RBP1.26□□□□□ -2.21
VPS54YDR027C GRR1P24814 1151 aa1.26□□□□□ -2.21
VPS54YDR027C SKT5P34226 696 aa1.26□□□□□ -2.21
VPS54YDR027C ALP1P38971 573 aa1.26□□□□□ -2.21
VPS54YDR027C LYS12P40495 371 aaKnown RBP1.26□□□□□ -2.21
VPS54YDR027C RRB1Q04225 511 aaKnown RBP1.26□□□□□ -2.21
VPS54YDR027C VPS20Q04272 221 aa1.26□□□□□ -2.21
VPS54YDR027C MGR3Q04472 501 aa1.26□□□□□ -2.21
VPS54YDR027C YCR024C-BQ3E7Z8 88 aa1.26□□□□□ -2.21
VPS54YDR027C FSH3Q99369 266 aa1.26□□□□□ -2.21
VPS54YDR027C RPP0P05317 312 aaKnown RBP1.25□□□□□ -2.21
VPS54YDR027C SPS22P25380 463 aa1.25□□□□□ -2.21
VPS54YDR027C KAR9P32526 644 aa1.25□□□□□ -2.21
VPS54YDR027C ZUO1P32527 433 aaKnown RBP1.25□□□□□ -2.21
VPS54YDR027C MNS1P32906 549 aa1.25□□□□□ -2.21
VPS54YDR027C COY1P34237 679 aa1.25□□□□□ -2.21
VPS54YDR027C MCR1P36060 302 aaKnown RBP1.25□□□□□ -2.21
VPS54YDR027C GEP4P38812 185 aa1.25□□□□□ -2.21
Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms