RNA–Protein interactions for RNA: YKL028W

TFA1, Transcript of TFIIE large subunit, yeast

Gene TFA1, Length 1,449 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFA1	YKL028W	VAM7	P32912	316 aa		4.05	□□□□□ -1.76
TFA1	YKL028W	MRPS5	P33759	307 aa		4.05	□□□□□ -1.76
TFA1	YKL028W	MYO3	P36006	1272 aa		4.05	□□□□□ -1.76
TFA1	YKL028W	PRS4	P38063	326 aa	Predicted RBP	4.05	□□□□□ -1.76
TFA1	YKL028W	LDB7	P38210	180 aa		4.05	□□□□□ -1.76
TFA1	YKL028W	GLG2	P47011	380 aa		4.05	□□□□□ -1.76
TFA1	YKL028W	ASN1	P49089	572 aa	Known RBP	4.05	□□□□□ -1.76
TFA1	YKL028W	TOS2	P50078	622 aa		4.05	□□□□□ -1.76
TFA1	YKL028W	SOL4	P53315	255 aa		4.05	□□□□□ -1.76
TFA1	YKL028W	MRPL50	P53724	139 aa		4.05	□□□□□ -1.76
TFA1	YKL028W	YNL247W	P53852	767 aa	Known RBP	4.05	□□□□□ -1.76
TFA1	YKL028W	ASA1	Q06822	443 aa		4.05	□□□□□ -1.76
TFA1	YKL028W	CMS1	Q07897	291 aa	Known RBP	4.05	□□□□□ -1.76
TFA1	YKL028W	REX4	Q08237	289 aa		4.05	□□□□□ -1.76
TFA1	YKL028W	GAL4	P04386	881 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	RPB8	P20436	146 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	DAL82	P21705	255 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	APA2	P22108	325 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	PUT3	P25502	979 aa	Predicted RBP	4.04	□□□□□ -1.76
TFA1	YKL028W	SNC1	P31109	117 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	MNS1	P32906	549 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	YPK3	P38070	525 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	PHO90	P39535	881 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	SHO1	P40073	367 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	RFC4	P40339	323 aa	Known RBP	4.04	□□□□□ -1.76
TFA1	YKL028W	HMS2	P47175	358 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	ORC5	P50874	479 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	TAF6	P53040	516 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	GPI1	P53306	609 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	GND2	P53319	492 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	CUS2	P53830	285 aa	Predicted RBP	4.04	□□□□□ -1.76
TFA1	YKL028W	EAF7	P53911	425 aa	Known RBP	4.04	□□□□□ -1.76
TFA1	YKL028W	YMR209C	Q03648	457 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	ADH6	Q04894	360 aa	Known RBP	4.04	□□□□□ -1.76
TFA1	YKL028W	YMR034C	Q05131	434 aa	Predicted RBP	4.04	□□□□□ -1.76
TFA1	YKL028W	SKI7	Q08491	747 aa	Predicted RBP	4.04	□□□□□ -1.76
TFA1	YKL028W	SAM4	Q08985	325 aa	Known RBP	4.04	□□□□□ -1.76
TFA1	YKL028W	RKM5	Q12367	367 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	HEM2	P05373	342 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	RHO1	P06780	209 aa	Known RBP	4.04	□□□□□ -1.76
TFA1	YKL028W	KIN3	P22209	435 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	BUB3	P26449	341 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	MRPL10	P36520	322 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	ARN1	P38731	627 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	YEL020C	P39994	560 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	NAS6	P50086	228 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	IMD3	P50095	523 aa	Known RBP	4.04	□□□□□ -1.76
TFA1	YKL028W	RMR1	P53060	241 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	PCP1	P53259	346 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	SWF1	Q04629	336 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	YMR226C	Q05016	267 aa	Known RBP	4.04	□□□□□ -1.76
TFA1	YKL028W	BER1	Q06688	274 aa	Known RBP	4.04	□□□□□ -1.76
TFA1	YKL028W	MSH5	Q12175	901 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	YOR338W	Q99326	363 aa		4.04	□□□□□ -1.76
TFA1	YKL028W	BI2	P03873	423 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	RAD1	P06777	1100 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	CDC33	P07260	213 aa	Known RBP	4.03	□□□□□ -1.76
TFA1	YKL028W	HEM1	P09950	548 aa	Predicted RBP	4.03	□□□□□ -1.76
TFA1	YKL028W	UTR1	P21373	530 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	VPS1	P21576	704 aa	Known RBP	4.03	□□□□□ -1.76
TFA1	YKL028W	YCR007C	P25354	239 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	RPS2	P25443	254 aa	Known RBP	4.03	□□□□□ -1.76
TFA1	YKL028W	POP5	P28005	173 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	TMT1	P32643	299 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	COX13	P32799	129 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	YKL097C	P34245	136 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	FLO10	P36170	1169 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	PFS1	P38872	237 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	AGP3	P43548	558 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	SSN8	P47821	323 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	LIF1	P53150	421 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	OKP1	P53298	406 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	KRE28	Q04431	385 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	ARP10	Q04549	284 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	IVY1	Q04934	453 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	FUS2	Q05670	677 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	SSK1	Q07084	712 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	LOT6	Q07923	191 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	ORT1	Q12375	292 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	YBL111C	Q3E7Y5	667 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	NCB2	Q92317	146 aa		4.03	□□□□□ -1.76
TFA1	YKL028W	TPK3	P05986	398 aa		4.02	□□□□□ -1.77
TFA1	YKL028W	AQY1	P0CD91	305 aa		4.02	□□□□□ -1.77
TFA1	YKL028W	MRPL8	P22353	238 aa		4.02	□□□□□ -1.77
TFA1	YKL028W	ACB1	P31787	87 aa		4.02	□□□□□ -1.77
TFA1	YKL028W	YBR056W	P38081	501 aa		4.02	□□□□□ -1.77
TFA1	YKL028W	RIM2	P38127	377 aa		4.02	□□□□□ -1.77
TFA1	YKL028W	LYS1	P38998	373 aa	RIP-Chip data	4.02	□□□□□ -1.77	RIP-Chip
TFA1	YKL028W	ISC1	P40015	477 aa	Known RBP	4.02	□□□□□ -1.77
TFA1	YKL028W	COA1	P40452	197 aa		4.02	□□□□□ -1.77
TFA1	YKL028W	SLM1	P40485	686 aa		4.02	□□□□□ -1.77
TFA1	YKL028W	AIM24	P47127	394 aa		4.02	□□□□□ -1.77
TFA1	YKL028W	PHB2	P50085	310 aa		4.02	□□□□□ -1.77
TFA1	YKL028W	SEH1	P53011	349 aa	Known RBP	4.02	□□□□□ -1.77
TFA1	YKL028W	MKC7	P53379	596 aa		4.02	□□□□□ -1.77
TFA1	YKL028W	TRM112	P53738	135 aa	Predicted RBP	4.02	□□□□□ -1.77
TFA1	YKL028W	ALG11	P53954	548 aa	Known RBP	4.02	□□□□□ -1.77
TFA1	YKL028W	NUP116	Q02630	1113 aa		4.02	□□□□□ -1.77
TFA1	YKL028W	SLD5	Q03406	294 aa		4.02	□□□□□ -1.77
TFA1	YKL028W	GIM5	Q04493	163 aa		4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 62.7 ms