RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSL1	YLR005W	TAF3	Q12297	353 aa		3.59	□□□□□ -1.83
SSL1	YLR005W	YPR064W	Q12492	139 aa		3.59	□□□□□ -1.83
SSL1	YLR005W	YMR030W-A	Q3E760	96 aa		3.59	□□□□□ -1.83
SSL1	YLR005W	CDC8	P00572	216 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	RPS17A	P02407	136 aa	Known RBP	3.58	□□□□□ -1.84
SSL1	YLR005W	SPT3	P06844	337 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	ARD1	P07347	238 aa	Predicted RBP	3.58	□□□□□ -1.84
SSL1	YLR005W	ADH4	P10127	382 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	RPS17B	P14127	136 aa	Known RBP	3.58	□□□□□ -1.84
SSL1	YLR005W	VPS33	P20795	691 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	YME1	P32795	747 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	RPS1A	P33442	255 aa	Known RBP	3.58	□□□□□ -1.84
SSL1	YLR005W	LHS1	P36016	881 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	GLG1	P36143	616 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	BNA4	P38169	460 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	UTP9	P38882	575 aa	Known RBP	3.58	□□□□□ -1.84
SSL1	YLR005W	YEL057C	P39983	233 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	GET2	P40056	285 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	PRM2	P40534	656 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	AXL1	P40851	1208 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	AZF1	P41696	914 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	YNL320W	P42840	284 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	PRM10	P42946	383 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	YJR141W	P47172	347 aa	Predicted RBP	3.58	□□□□□ -1.84
SSL1	YLR005W	IMO32	P53219	342 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	RCF2	P53721	224 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	IST1	P53843	298 aa	Predicted RBP	3.58	□□□□□ -1.84
SSL1	YLR005W	GAS3	Q03655	524 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	CSN9	Q03981	162 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	SEC10	Q06245	871 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	YET3	Q07451	203 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	YTM1	Q12024	460 aa	Predicted RBP	3.58	□□□□□ -1.84
SSL1	YLR005W	YOS9	Q99220	542 aa		3.58	□□□□□ -1.84
SSL1	YLR005W	ARG4	P04076	463 aa	Predicted RBP	3.57	□□□□□ -1.84
SSL1	YLR005W	RPB2	P08518	1224 aa	Known RBP	3.57	□□□□□ -1.84
SSL1	YLR005W	YSF3	P0C074	85 aa	Predicted RBP	3.57	□□□□□ -1.84
SSL1	YLR005W	CBS2	P14905	389 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	TRX3	P25372	127 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	AAD3	P25612	363 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	PCL2	P25693	308 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	KRE6	P32486	720 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	ASK1	P35734	292 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	YCR087C-A	P37263	153 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	OM14	P38325	134 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	YHB1	P39676	399 aa	Known RBP	3.57	□□□□□ -1.84
SSL1	YLR005W	OAF1	P39720	1047 aa	Predicted RBP	3.57	□□□□□ -1.84
SSL1	YLR005W	YNL195C	P40168	261 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	MET18	P40469	1032 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	PKP1	P40530	394 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	GCD10	P41814	478 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	IRC6	P43615	237 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	APS3	P47064	194 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	STE24	P47154	453 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	COX18	P53239	316 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	ATG4	P53867	494 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	YPL068C	Q02749	293 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	YML131W	Q03102	365 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	YMR209C	Q03648	457 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	YPR174C	Q06616	221 aa	Predicted RBP	3.57	□□□□□ -1.84
SSL1	YLR005W	MCM21	Q06675	368 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	YDL121C	Q07541	149 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	YLR049C	Q12110	428 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	CHS5	Q12114	671 aa	Known RBP	3.57	□□□□□ -1.84
SSL1	YLR005W	USV1	Q12132	391 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	RMP1	Q12530	201 aa		3.57	□□□□□ -1.84
SSL1	YLR005W	CDC39	P25655	2108 aa	Known RBP	3.57	□□□□□ -1.84
SSL1	YLR005W	HXK2	P04807	486 aa	Known RBP	3.56	□□□□□ -1.84
SSL1	YLR005W	SRV2	P17555	526 aa	Known RBP	3.56	□□□□□ -1.84
SSL1	YLR005W	APN1	P22936	367 aa		3.56	□□□□□ -1.84
SSL1	YLR005W	SGV1	P23293	657 aa	Known RBP	3.56	□□□□□ -1.84
SSL1	YLR005W	STP22	P25604	385 aa		3.56	□□□□□ -1.84
SSL1	YLR005W	CBP4	P37267	147 aa		3.56	□□□□□ -1.84
SSL1	YLR005W	COA1	P40452	197 aa		3.56	□□□□□ -1.84
SSL1	YLR005W	ECO1	P43605	281 aa		3.56	□□□□□ -1.84
SSL1	YLR005W	ALB1	P47019	175 aa	Predicted RBP	3.56	□□□□□ -1.84
SSL1	YLR005W	YJR039W	P47107	1121 aa		3.56	□□□□□ -1.84
SSL1	YLR005W	YGR067C	P53243	804 aa		3.56	□□□□□ -1.84
SSL1	YLR005W	USA1	Q03714	838 aa		3.56	□□□□□ -1.84
SSL1	YLR005W	RQC1	Q05468	723 aa	Known RBP	3.56	□□□□□ -1.84
SSL1	YLR005W	RIF2	Q06208	395 aa		3.56	□□□□□ -1.84
SSL1	YLR005W	YPR172W	Q06608	200 aa		3.56	□□□□□ -1.84
SSL1	YLR005W	NUR1	Q12066	484 aa		3.56	□□□□□ -1.84
SSL1	YLR005W	BAG7	Q12128	409 aa		3.56	□□□□□ -1.84
SSL1	YLR005W	YPL247C	Q12523	523 aa		3.56	□□□□□ -1.84
SSL1	YLR005W	ERG8	P24521	451 aa		3.55	□□□□□ -1.84
SSL1	YLR005W	PRP19	P32523	503 aa	Known RBP	3.55	□□□□□ -1.84
SSL1	YLR005W	MSN2	P33748	704 aa		3.55	□□□□□ -1.84
SSL1	YLR005W	PTH2	P34222	208 aa		3.55	□□□□□ -1.84
SSL1	YLR005W	SNU114	P36048	1008 aa	Known RBP	3.55	□□□□□ -1.84
SSL1	YLR005W	VPS51	P36116	164 aa		3.55	□□□□□ -1.84
SSL1	YLR005W	SPP381	P38282	291 aa	Predicted RBP	3.55	□□□□□ -1.84
SSL1	YLR005W	TRR2	P38816	342 aa		3.55	□□□□□ -1.84
SSL1	YLR005W	APE4	P38821	490 aa		3.55	□□□□□ -1.84
SSL1	YLR005W	TDA11	P38854	504 aa		3.55	□□□□□ -1.84
SSL1	YLR005W	PEP8	P40335	379 aa		3.55	□□□□□ -1.84
SSL1	YLR005W	XBP1	P40489	647 aa		3.55	□□□□□ -1.84
SSL1	YLR005W	UTP25	P40498	721 aa	Known RBP	3.55	□□□□□ -1.84
SSL1	YLR005W	GPP1	P41277	250 aa	Known RBP	3.55	□□□□□ -1.84
SSL1	YLR005W	PSA1	P41940	361 aa	Known RBP	3.55	□□□□□ -1.84
SSL1	YLR005W	SNO3	P43544	222 aa		3.55	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 97.4 ms