RNA–Protein interactions for RNA: snR48

snR48, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR48, Length 113 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR48snR48 VHC1P38329 1120 aa0.18□□□□□ -2.38
snR48snR48 VHS2P40463 436 aa0.18□□□□□ -2.38
snR48snR48 VHT1P53241 593 aa0.18□□□□□ -2.38
snR48snR48 LOT6Q07923 191 aa0.18□□□□□ -2.38
snR48snR48 RPS23AP0CX29 145 aaKnown RBP0.17□□□□□ -2.38
snR48snR48 RPS23BP0CX30 145 aa0.17□□□□□ -2.38
snR48snR48 CTR86P25355 563 aa0.17□□□□□ -2.38
snR48snR48 ALK2P32789 676 aaPredicted RBP0.17□□□□□ -2.38
snR48snR48 CST26P38226 397 aa0.17□□□□□ -2.38
snR48snR48 FLC2P39719 783 aa0.17□□□□□ -2.38
snR48snR48 SRL2Q12020 392 aa0.17□□□□□ -2.38
snR48snR48 SRO7Q12038 1033 aa0.17□□□□□ -2.38
snR48snR48 TPT1Q12272 230 aaKnown RBP0.17□□□□□ -2.38
snR48snR48 HTZ1Q12692 134 aaKnown RBP0.17□□□□□ -2.38
snR48snR48 SEC39Q12745 709 aa0.17□□□□□ -2.38
snR48snR48 FOB1O13329 566 aa0.16□□□□□ -2.38
snR48snR48 SPS4P09937 338 aa0.16□□□□□ -2.38
snR48snR48 DBF4P32325 704 aa0.16□□□□□ -2.38
snR48snR48 MRE11P32829 692 aa0.16□□□□□ -2.38
snR48snR48 MRS6P32864 603 aaKnown RBP0.16□□□□□ -2.38
snR48snR48 TKL2P33315 681 aa0.16□□□□□ -2.38
snR48snR48 YBR056WP38081 501 aa0.16□□□□□ -2.38
snR48snR48 VTC2P43585 828 aa0.16□□□□□ -2.38
snR48snR48 YJR011CP47086 261 aaPredicted RBP0.16□□□□□ -2.38
snR48snR48 GPI15P53961 229 aa0.16□□□□□ -2.38
snR48snR48 TAP42Q04372 366 aa0.16□□□□□ -2.38
snR48snR48 NMD4Q12129 218 aa0.16□□□□□ -2.38
snR48snR48 FRE8Q12209 686 aa0.16□□□□□ -2.38
snR48snR48 YOL085CQ99345 113 aa0.16□□□□□ -2.38
snR48snR48 SEC53P07283 254 aaKnown RBP0.15□□□□□ -2.39
snR48snR48 CBS1P14066 229 aa0.15□□□□□ -2.39
snR48snR48 FRM2P37261 193 aa0.15□□□□□ -2.39
snR48snR48 ECM8P38246 354 aa0.15□□□□□ -2.39
snR48snR48 RRT13P40042 185 aa0.15□□□□□ -2.39
snR48snR48 YMR155WQ03795 547 aa0.15□□□□□ -2.39
snR48snR48 PRM6Q04705 352 aa0.15□□□□□ -2.39
snR48snR48 RCN2Q12044 265 aa0.15□□□□□ -2.39
snR48snR48 FLO11P08640 1367 aa0.15□□□□□ -2.39
snR48snR48 DFR1P07807 211 aaKnown RBP RIP-Chip data0.14□□□□□ -2.39not detected
snR48snR48 HOM3P10869 527 aa0.14□□□□□ -2.39
snR48snR48 EXG1P23776 448 aaKnown RBP0.14□□□□□ -2.39
snR48snR48 GIT1P25346 518 aa0.14□□□□□ -2.39
snR48snR48 MIG1P27705 504 aa0.14□□□□□ -2.39
snR48snR48 SKT5P34226 696 aa0.14□□□□□ -2.39
snR48snR48 TOM20P35180 183 aa0.14□□□□□ -2.39
snR48snR48 YKR032WP36127 104 aa0.14□□□□□ -2.39
snR48snR48 AIP1P46680 615 aaKnown RBP0.14□□□□□ -2.39
snR48snR48 YGL088WP53151 121 aa0.14□□□□□ -2.39
snR48snR48 GIP3Q03016 1276 aa0.14□□□□□ -2.39
snR48snR48 GIR2Q03768 265 aaPredicted RBP0.14□□□□□ -2.39
snR48snR48 VMS1Q04311 632 aaKnown RBP0.14□□□□□ -2.39
snR48snR48 ASA1Q06822 443 aa0.14□□□□□ -2.39
snR48snR48 LDS2Q08218 356 aa0.14□□□□□ -2.39
snR48snR48 FCY22Q12119 530 aa0.14□□□□□ -2.39
snR48snR48 GPH1P06738 902 aaKnown RBP0.13□□□□□ -2.39
snR48snR48 RIP1P08067 215 aa0.13□□□□□ -2.39
snR48snR48 CAP2P13517 287 aa0.13□□□□□ -2.39
snR48snR48 DBP7P36120 742 aaKnown RBP0.13□□□□□ -2.39
snR48snR48 ATP3P38077 311 aaKnown RBP0.13□□□□□ -2.39
snR48snR48 MNN5P46982 586 aa0.13□□□□□ -2.39
snR48snR48 SEH1P53011 349 aaKnown RBP0.13□□□□□ -2.39
snR48snR48 TWF1P53250 332 aa0.13□□□□□ -2.39
snR48snR48 RRP46P53256 223 aaPredicted RBP0.13□□□□□ -2.39
snR48snR48 MEP3P53390 489 aa0.13□□□□□ -2.39
snR48snR48 YLR177WQ06251 628 aa0.13□□□□□ -2.39
snR48snR48 LDB17Q12342 491 aa0.13□□□□□ -2.39
snR48snR48 YCR024C-BQ3E7Z8 88 aa0.13□□□□□ -2.39
snR48snR48 SEC63P14906 663 aa0.12□□□□□ -2.39
snR48snR48 CKA2P19454 339 aa0.12□□□□□ -2.39
snR48snR48 PPH22P23595 377 aa0.12□□□□□ -2.39
snR48snR48 PMT1P33775 817 aa0.12□□□□□ -2.39
snR48snR48 YBR241CP38142 488 aa0.12□□□□□ -2.39
snR48snR48 YAL037WP39728 267 aa0.12□□□□□ -2.39
snR48snR48 RPS0BP46654 252 aaKnown RBP0.12□□□□□ -2.39
snR48snR48 TRF5P48561 642 aaKnown RBP0.12□□□□□ -2.39
snR48snR48 MRX6P48564 524 aa0.12□□□□□ -2.39
snR48snR48 CLP1Q08685 445 aaPredicted RBP0.12□□□□□ -2.39
snR48snR48 YDL211CQ12121 372 aa0.12□□□□□ -2.39
snR48snR48 NCA2Q12374 616 aa0.12□□□□□ -2.39
snR48snR48 YDL199CQ12407 687 aa0.12□□□□□ -2.39
snR48snR48 YAL067W-AQ8TGK6 75 aa0.12□□□□□ -2.39
snR48snR48 RHB1P25378 209 aa0.11□□□□□ -2.39
snR48snR48 SPS19P32573 292 aaKnown RBP0.11□□□□□ -2.39
snR48snR48 SOR1P35497 357 aaKnown RBP0.11□□□□□ -2.39
snR48snR48 APE3P37302 537 aaKnown RBP0.11□□□□□ -2.39
snR48snR48 MED6P38782 295 aa0.11□□□□□ -2.39
snR48snR48 RRP4P38792 359 aaKnown RBP0.11□□□□□ -2.39
snR48snR48 YMR018WQ04364 514 aa0.11□□□□□ -2.39
snR48snR48 YHC1Q05900 231 aaKnown RBP0.11□□□□□ -2.39
snR48snR48 SOR2Q07786 357 aa0.11□□□□□ -2.39
snR48snR48 YOR376WQ08900 122 aa0.11□□□□□ -2.39
snR48snR48 ADH3P07246 375 aaKnown RBP0.1□□□□□ -2.39
snR48snR48 MSP1P28737 362 aa0.1□□□□□ -2.39
snR48snR48 TOA1P32773 286 aa0.1□□□□□ -2.39
snR48snR48 RAD5P32849 1169 aaPredicted RBP0.1□□□□□ -2.39
snR48snR48 CMC1P36064 111 aa0.1□□□□□ -2.39
snR48snR48 RFC3P38629 340 aa0.1□□□□□ -2.39
snR48snR48 VMA13P41807 478 aaKnown RBP0.1□□□□□ -2.39
snR48snR48 HXT14P42833 540 aa0.1□□□□□ -2.39
snR48snR48 RNH201P53942 307 aa0.1□□□□□ -2.39
Retrieved 100 of 5,963 RNA–protein pairs in 24.3 ms