RNA–Protein interactions for RNA: YLR229C

CDC42, Transcript of Small rho-like GTPase, yeast

Gene CDC42, Length 576 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC42	YLR229C	MF(ALPHA)2	P32435	120 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	ASF2	P32448	525 aa	Predicted RBP	4.23	□□□□□ -1.73
CDC42	YLR229C	HIR2	P32480	875 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	MEI5	P32489	222 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	SKT5	P34226	696 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	YKL100C	P34248	587 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	PTC1	P35182	281 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	UTP30	P36144	274 aa	Known RBP	4.23	□□□□□ -1.73
CDC42	YLR229C	PIM1	P36775	1133 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	YBL029W	P38201	376 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	ECM8	P38246	354 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	IPT1	P38954	527 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	VMA7	P39111	118 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	TPA1	P40032	644 aa	Known RBP	4.23	□□□□□ -1.73
CDC42	YLR229C	ALG8	P40351	577 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	YIL161W	P40449	235 aa	Known RBP	4.23	□□□□□ -1.73
CDC42	YLR229C	GCD10	P41814	478 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	IRC6	P43615	237 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	SIP4	P46954	829 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	PET130	P47065	347 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	HAM1	P47119	197 aa	Known RBP	4.23	□□□□□ -1.73
CDC42	YLR229C	EXG2	P52911	562 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	COG1	P53079	417 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	EFM5	P53200	248 aa	Known RBP	4.23	□□□□□ -1.73
CDC42	YLR229C	COX18	P53239	316 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	IPI3	P53877	555 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	IBD2	P53892	351 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	RPL6A	Q02326	176 aa	Known RBP	4.23	□□□□□ -1.73
CDC42	YLR229C	SMA1	Q02651	245 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	REC102	Q02721	264 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	YMR210W	Q03649	449 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	DML1	Q03652	475 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	YMR206W	Q03695	313 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	TAF12	Q03761	539 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	APC4	Q04601	652 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	RCO1	Q04779	684 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	HEL2	Q05580	639 aa	Known RBP	4.23	□□□□□ -1.73
CDC42	YLR229C	ATG29	Q12092	213 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	AHA1	Q12449	350 aa	Known RBP	4.23	□□□□□ -1.73
CDC42	YLR229C	PEX11	Q12462	236 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	UBR2	Q07963	1872 aa		4.23	□□□□□ -1.73
CDC42	YLR229C	KAR1	P11927	433 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	DBP3	P20447	523 aa	Known RBP	4.22	□□□□□ -1.73
CDC42	YLR229C	VPS33	P20795	691 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	DAL81	P21657	970 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	GIT1	P25346	518 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	CHA1	P25379	360 aa	Known RBP	4.22	□□□□□ -1.73
CDC42	YLR229C	BUB2	P26448	306 aa	Predicted RBP	4.22	□□□□□ -1.73
CDC42	YLR229C	PPZ1	P26570	692 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	NIC96	P34077	839 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	FRE2	P36033	711 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	STB6	P36085	766 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	LDB7	P38210	180 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	FTH1	P38310	465 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	ARP1	P38696	384 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	GND1	P38720	489 aa	Known RBP	4.22	□□□□□ -1.73
CDC42	YLR229C	ARN2	P38724	620 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	EFM1	P38732	585 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	FAD1	P38913	306 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	FMP10	P40098	244 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	TES1	P41903	349 aa	Known RBP	4.22	□□□□□ -1.73
CDC42	YLR229C	DUG1	P43616	481 aa	Known RBP	4.22	□□□□□ -1.73
CDC42	YLR229C	YJR154W	P47181	346 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	GPI8	P49018	411 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	KEL2	P50090	882 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	CWC23	P52868	283 aa	Predicted RBP	4.22	□□□□□ -1.73
CDC42	YLR229C	MRPL13	Q02204	264 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	TOF2	Q02208	771 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	YPL014W	Q02606	381 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	YML131W	Q03102	365 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	GOT1	Q03554	138 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	GAS3	Q03655	524 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	CTK1	Q03957	528 aa	Known RBP	4.22	□□□□□ -1.73
CDC42	YLR229C	RAD33	Q04231	177 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.22	□□□□□ -1.73	not detected
CDC42	YLR229C	RAX1	Q08760	435 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	NDD1	Q08887	554 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	ICT1	Q12385	394 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	ATG31	Q12421	196 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	MHF2	Q3E829	80 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	RIB3	Q99258	208 aa		4.22	□□□□□ -1.73
CDC42	YLR229C	PDE2	P06776	526 aa		4.21	□□□□□ -1.74
CDC42	YLR229C	RAD7	P06779	565 aa		4.21	□□□□□ -1.74
CDC42	YLR229C	TRP4	P07285	380 aa	Predicted RBP	4.21	□□□□□ -1.74
CDC42	YLR229C	CBS2	P14905	389 aa		4.21	□□□□□ -1.74
CDC42	YLR229C	ARF2	P19146	181 aa	Known RBP	4.21	□□□□□ -1.74
CDC42	YLR229C	SAR1	P20606	190 aa	Known RBP	4.21	□□□□□ -1.74
CDC42	YLR229C	KIN3	P22209	435 aa		4.21	□□□□□ -1.74
CDC42	YLR229C	PPH22	P23595	377 aa		4.21	□□□□□ -1.74
CDC42	YLR229C	PEX1	P24004	1043 aa		4.21	□□□□□ -1.74
CDC42	YLR229C	MNE1	P24720	663 aa		4.21	□□□□□ -1.74
CDC42	YLR229C	HCM1	P25364	564 aa		4.21	□□□□□ -1.74
CDC42	YLR229C	YCL049C	P25577	312 aa		4.21	□□□□□ -1.74
CDC42	YLR229C	GEX1	P25596	615 aa		4.21	□□□□□ -1.74
CDC42	YLR229C	SYN8	P31377	255 aa		4.21	□□□□□ -1.74
CDC42	YLR229C	ACH1	P32316	526 aa		4.21	□□□□□ -1.74
CDC42	YLR229C	CDC5	P32562	705 aa		4.21	□□□□□ -1.74
CDC42	YLR229C	MRPL6	P32904	214 aa		4.21	□□□□□ -1.74
CDC42	YLR229C	ALY1	P36117	915 aa		4.21	□□□□□ -1.74
CDC42	YLR229C	GEX2	P36173	615 aa		4.21	□□□□□ -1.74

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