RNA–Protein interactions for RNA: YER012W

PRE1, Transcript of Beta 4 subunit of the 20S proteasome, yeastyeast

Gene PRE1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE1YER012W MRX6P48564 524 aa2.83□□□□□ -1.96
PRE1YER012W IMD4P50094 524 aaKnown RBP2.83□□□□□ -1.96
PRE1YER012W RRN11Q04712 507 aa2.83□□□□□ -1.96
PRE1YER012W YPQ1Q12010 308 aa2.83□□□□□ -1.96
PRE1YER012W CEX1Q12453 761 aa2.83□□□□□ -1.96
PRE1YER012W CSF1Q12150 2958 aa2.82□□□□□ -1.96
PRE1YER012W HIS4P00815 799 aaKnown RBP2.82□□□□□ -1.96
PRE1YER012W CDC31P06704 161 aaKnown RBP2.82□□□□□ -1.96
PRE1YER012W HAP2P06774 265 aa2.82□□□□□ -1.96
PRE1YER012W RNR2P09938 399 aaKnown RBP2.82□□□□□ -1.96
PRE1YER012W ASP3-2P0CX77 362 aa2.82□□□□□ -1.96
PRE1YER012W ASP3-3P0CX78 362 aa2.82□□□□□ -1.96
PRE1YER012W ASP3-4P0CX79 362 aa2.82□□□□□ -1.96
PRE1YER012W CUP1-1P0CX80 61 aa2.82□□□□□ -1.96
PRE1YER012W CUP1-2P0CX81 61 aa2.82□□□□□ -1.96
PRE1YER012W ASP3-1P0CZ17 362 aa2.82□□□□□ -1.96
PRE1YER012W MAS1P10507 462 aa2.82□□□□□ -1.96
PRE1YER012W TPM1P17536 199 aaKnown RBP2.82□□□□□ -1.96
PRE1YER012W CKA2P19454 339 aa2.82□□□□□ -1.96
PRE1YER012W GLC7P32598 312 aaKnown RBP2.82□□□□□ -1.96
PRE1YER012W PRX1P34227 261 aaKnown RBP2.82□□□□□ -1.96
PRE1YER012W RSM22P36056 628 aa2.82□□□□□ -1.96
PRE1YER012W WWM1P43582 211 aaKnown RBP2.82□□□□□ -1.96
PRE1YER012W RMD8P43620 662 aa2.82□□□□□ -1.96
PRE1YER012W ALK1P43633 760 aaKnown RBP2.82□□□□□ -1.96
PRE1YER012W HSH155P49955 971 aaKnown RBP2.82□□□□□ -1.96
PRE1YER012W TSR2Q06672 205 aaKnown RBP2.82□□□□□ -1.96
PRE1YER012W DNL4Q08387 944 aaPredicted RBP2.82□□□□□ -1.96
PRE1YER012W YDL012CQ12489 107 aa2.82□□□□□ -1.96
PRE1YER012W FOB1O13329 566 aa2.81□□□□□ -1.96
PRE1YER012W COR1P07256 457 aa2.81□□□□□ -1.96
PRE1YER012W SEC53P07283 254 aaKnown RBP2.81□□□□□ -1.96
PRE1YER012W CDC42P19073 191 aa2.81□□□□□ -1.96
PRE1YER012W RVS161P25343 265 aaKnown RBP2.81□□□□□ -1.96
PRE1YER012W PEX34P25584 144 aa2.81□□□□□ -1.96
PRE1YER012W UTH1P36135 365 aa2.81□□□□□ -1.96
PRE1YER012W ALG5P40350 334 aa2.81□□□□□ -1.96
PRE1YER012W SGN1P40561 250 aaKnown RBP RIP-Chip data2.81□□□□□ -1.96not detected
PRE1YER012W REE1P40893 198 aa2.81□□□□□ -1.96
PRE1YER012W POP6P53218 158 aa2.81□□□□□ -1.96
PRE1YER012W VPS75P53853 264 aa2.81□□□□□ -1.96
PRE1YER012W ADA2Q02336 434 aa2.81□□□□□ -1.96
PRE1YER012W MSB2P32334 1306 aa2.81□□□□□ -1.96
PRE1YER012W GAL80P04387 435 aa2.8□□□□□ -1.96
PRE1YER012W ARG3P05150 338 aa2.8□□□□□ -1.96
PRE1YER012W ATP1P07251 545 aaKnown RBP2.8□□□□□ -1.96
PRE1YER012W RPL40AP0CH08 128 aaKnown RBP2.8□□□□□ -1.96
PRE1YER012W RPL40BP0CH09 128 aaKnown RBP2.8□□□□□ -1.96
PRE1YER012W PPH22P23595 377 aa2.8□□□□□ -1.96
PRE1YER012W PCL1P24867 279 aa2.8□□□□□ -1.96
PRE1YER012W RRT12P25381 491 aa2.8□□□□□ -1.96
PRE1YER012W ARO2P28777 376 aaKnown RBP2.8□□□□□ -1.96
PRE1YER012W MUD1P32605 298 aaKnown RBP2.8□□□□□ -1.96
PRE1YER012W SEF1P34228 1148 aa2.8□□□□□ -1.96
PRE1YER012W MMS4P38257 691 aa2.8□□□□□ -1.96
PRE1YER012W MSR1P38714 643 aa2.8□□□□□ -1.96
PRE1YER012W YHR054CP38780 354 aa2.8□□□□□ -1.96
PRE1YER012W MED6P38782 295 aa2.8□□□□□ -1.96
PRE1YER012W FLC2P39719 783 aa2.8□□□□□ -1.96
PRE1YER012W TOS3P43637 560 aa2.8□□□□□ -1.96
PRE1YER012W CUE3P53137 624 aaKnown RBP2.8□□□□□ -1.96
PRE1YER012W CWC21Q03375 135 aaKnown RBP2.8□□□□□ -1.96
PRE1YER012W PPM1Q04081 328 aa2.8□□□□□ -1.96
PRE1YER012W NMD4Q12129 218 aa2.8□□□□□ -1.96
PRE1YER012W RLM1Q12224 676 aa2.8□□□□□ -1.96
PRE1YER012W NOP58Q12499 511 aaKnown RBP2.8□□□□□ -1.96
PRE1YER012W NBL1Q3E7Y6 73 aa2.8□□□□□ -1.96
PRE1YER012W MEX67Q99257 599 aaKnown RBP2.8□□□□□ -1.96
PRE1YER012W YBR056W-AI2HB52 66 aa2.79□□□□□ -1.96
PRE1YER012W GCN4P03069 281 aa2.79□□□□□ -1.96
PRE1YER012W MET17P06106 444 aa2.79□□□□□ -1.96
PRE1YER012W PSO2P30620 661 aa2.79□□□□□ -1.96
PRE1YER012W ATP11P32453 318 aa2.79□□□□□ -1.96
PRE1YER012W WSC4P38739 605 aa2.79□□□□□ -1.96
PRE1YER012W FHL1P39521 936 aa2.79□□□□□ -1.96
PRE1YER012W OST1P41543 476 aaKnown RBP2.79□□□□□ -1.96
PRE1YER012W VTC2P43585 828 aa2.79□□□□□ -1.96
PRE1YER012W VEL1P53058 206 aa2.79□□□□□ -1.96
PRE1YER012W MRPL19P53875 158 aa2.79□□□□□ -1.96
PRE1YER012W TIM8P57744 87 aa2.79□□□□□ -1.96
PRE1YER012W PRM6Q04705 352 aa2.79□□□□□ -1.96
PRE1YER012W CUR1Q06469 252 aa2.79□□□□□ -1.96
PRE1YER012W YPT6Q99260 215 aa2.79□□□□□ -1.96
PRE1YER012W CBS1P14066 229 aa2.78□□□□□ -1.96
PRE1YER012W RPC53P25441 422 aa2.78□□□□□ -1.96
PRE1YER012W BMH1P29311 267 aaKnown RBP2.78□□□□□ -1.96
PRE1YER012W SKG6P32900 734 aaPredicted RBP2.78□□□□□ -1.96
PRE1YER012W RPC25P35718 212 aa2.78□□□□□ -1.96
PRE1YER012W JNM1P36224 373 aa2.78□□□□□ -1.96
PRE1YER012W NOP4P37838 685 aaKnown RBP2.78□□□□□ -1.96
PRE1YER012W YEL057CP39983 233 aa2.78□□□□□ -1.96
PRE1YER012W ISC1P40015 477 aaKnown RBP2.78□□□□□ -1.96
PRE1YER012W MMF1P40185 145 aaKnown RBP2.78□□□□□ -1.96
PRE1YER012W SYG1P40528 902 aa2.78□□□□□ -1.96
PRE1YER012W POP1P41812 875 aa2.78□□□□□ -1.96
PRE1YER012W IRC6P43615 237 aa2.78□□□□□ -1.96
PRE1YER012W AIP1P46680 615 aaKnown RBP2.78□□□□□ -1.96
PRE1YER012W NCA3P46955 337 aa2.78□□□□□ -1.96
PRE1YER012W CPR7P47103 393 aa2.78□□□□□ -1.96
PRE1YER012W TAF11Q04226 346 aa2.78□□□□□ -1.96
Retrieved 100 of 5,963 RNA–protein pairs in 33.6 ms