RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSH4	YKL124W	SGF73	P53165	657 aa		4.27	□□□□□ -1.73
SSH4	YKL124W	YGR012W	P53206	393 aa		4.27	□□□□□ -1.73
SSH4	YKL124W	MOT3	P54785	490 aa	Known RBP	4.27	□□□□□ -1.73
SSH4	YKL124W	BUD22	Q04347	519 aa	Known RBP	4.27	□□□□□ -1.73
SSH4	YKL124W	CRN1	Q06440	651 aa		4.27	□□□□□ -1.73
SSH4	YKL124W	YOL073C	Q08232	322 aa		4.27	□□□□□ -1.73
SSH4	YKL124W	BDS1	Q08347	646 aa		4.27	□□□□□ -1.73
SSH4	YKL124W	YOR114W	Q12219	294 aa		4.27	□□□□□ -1.73
SSH4	YKL124W	UBX3	Q12229	455 aa		4.27	□□□□□ -1.73
SSH4	YKL124W	YLR111W	Q12528	110 aa		4.27	□□□□□ -1.73
SSH4	YKL124W	HEM2	P05373	342 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	MSB1	P21339	1137 aa	Known RBP	4.26	□□□□□ -1.73
SSH4	YKL124W	SPB1	P25582	841 aa	Predicted RBP	4.26	□□□□□ -1.73
SSH4	YKL124W	MCM5	P29496	775 aa	Known RBP	4.26	□□□□□ -1.73
SSH4	YKL124W	MLS1	P30952	554 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	4.26	□□□□□ -1.73	not detected
SSH4	YKL124W	RPT5	P33297	434 aa	Known RBP	4.26	□□□□□ -1.73
SSH4	YKL124W	YRO2	P38079	344 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	SEA4	P38164	1038 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	INM1	P38710	295 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	YHR112C	P38716	378 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	DHH1	P39517	506 aa	Known RBP	4.26	□□□□□ -1.73
SSH4	YKL124W	OAF1	P39720	1047 aa	Predicted RBP	4.26	□□□□□ -1.73
SSH4	YKL124W	FAU1	P40099	211 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	YIL086C	P40503	102 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	MRPS18	P42847	217 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	ALK1	P43633	760 aa	Known RBP	4.26	□□□□□ -1.73
SSH4	YKL124W	YJR030C	P47101	745 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	YGR067C	P53243	804 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	SNF12	P53628	566 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	HOS3	Q02959	697 aa	Known RBP	4.26	□□□□□ -1.73
SSH4	YKL124W	YMR209C	Q03648	457 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	NNT1	Q05874	261 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	LOT6	Q07923	191 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	PSY3	Q12318	242 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	FRE7	Q12333	620 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	AHA1	Q12449	350 aa	Known RBP	4.26	□□□□□ -1.73
SSH4	YKL124W	TSC13	Q99190	310 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	PNO1	Q99216	274 aa	Known RBP	4.26	□□□□□ -1.73
SSH4	YKL124W	MET17	P06106	444 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	PRB1	P09232	635 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	CKA1	P15790	372 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	HOP1	P20050	605 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	SEC15	P22224	910 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	AGP1	P25376	633 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	ILV6	P25605	309 aa	Known RBP	4.26	□□□□□ -1.73
SSH4	YKL124W	YCR090C	P25654	182 aa	Known RBP	4.26	□□□□□ -1.73
SSH4	YKL124W	ADE1	P27616	306 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	PRO1	P32264	428 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	DSS1	P39112	969 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	MTW1	P39731	289 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	GDI1	P39958	451 aa	Known RBP	4.26	□□□□□ -1.73
SSH4	YKL124W	PEP8	P40335	379 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	YIL077C	P40508	320 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	URB2	P47108	1174 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	TEL2	P53038	688 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	BIO4	P53630	237 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	IST1	P53843	298 aa	Predicted RBP	4.26	□□□□□ -1.73
SSH4	YKL124W	YNL260C	P53846	198 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	IBD2	P53892	351 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	CIK1	Q01649	594 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	TAF12	Q03761	539 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	CSN9	Q03981	162 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	ROY1	Q04847	553 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	RSF1	Q05043	376 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	NDL1	Q06568	189 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	XYL2	Q07993	356 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	YOL024W	Q08172	172 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	YOL114C	Q12322	202 aa		4.26	□□□□□ -1.73
SSH4	YKL124W	SPT3	P06844	337 aa		4.25	□□□□□ -1.73
SSH4	YKL124W	ARG80	P07249	177 aa		4.25	□□□□□ -1.73
SSH4	YKL124W	RPS4A	P0CX35	261 aa	Known RBP	4.25	□□□□□ -1.73
SSH4	YKL124W	RPS4B	P0CX36	261 aa	Known RBP	4.25	□□□□□ -1.73
SSH4	YKL124W	GRR1	P24814	1151 aa		4.25	□□□□□ -1.73
SSH4	YKL124W	LDB16	P25587	256 aa		4.25	□□□□□ -1.73
SSH4	YKL124W	MRT4	P33201	236 aa	Known RBP	4.25	□□□□□ -1.73
SSH4	YKL124W	LST4	P34239	828 aa		4.25	□□□□□ -1.73
SSH4	YKL124W	MRP8	P35719	219 aa		4.25	□□□□□ -1.73
SSH4	YKL124W	RMA1	P36001	430 aa	Known RBP	4.25	□□□□□ -1.73
SSH4	YKL124W	KKQ8	P36004	724 aa		4.25	□□□□□ -1.73
SSH4	YKL124W	PAN2	P53010	1115 aa	Predicted RBP	4.25	□□□□□ -1.73
SSH4	YKL124W	ERG26	P53199	349 aa	Known RBP	4.25	□□□□□ -1.73
SSH4	YKL124W	ARC35	P53731	342 aa	Known RBP	4.25	□□□□□ -1.73
SSH4	YKL124W	RPM2	Q02773	1202 aa		4.25	□□□□□ -1.73
SSH4	YKL124W	YPL109C	Q02981	657 aa		4.25	□□□□□ -1.73
SSH4	YKL124W	TRS23	Q03784	219 aa		4.25	□□□□□ -1.73
SSH4	YKL124W	SHE9	Q04172	456 aa		4.25	□□□□□ -1.73
SSH4	YKL124W	VBA4	Q04602	768 aa	Known RBP	4.25	□□□□□ -1.73
SSH4	YKL124W	ECM18	Q04623	453 aa		4.25	□□□□□ -1.73
SSH4	YKL124W	DAL4	Q04895	635 aa		4.25	□□□□□ -1.73
SSH4	YKL124W	VHS3	Q08438	674 aa		4.25	□□□□□ -1.73
SSH4	YKL124W	CHS5	Q12114	671 aa	Known RBP	4.25	□□□□□ -1.73
SSH4	YKL124W	HAL9	Q12180	1030 aa		4.25	□□□□□ -1.73
SSH4	YKL124W	ISA2	Q12425	185 aa		4.25	□□□□□ -1.73
SSH4	YKL124W	SKS1	Q12505	502 aa		4.25	□□□□□ -1.73
SSH4	YKL124W	BCY1	P07278	416 aa	Known RBP	4.24	□□□□□ -1.73
SSH4	YKL124W	CAR2	P07991	424 aa	Known RBP	4.24	□□□□□ -1.73
SSH4	YKL124W	KIN2	P13186	1147 aa	Known RBP	4.24	□□□□□ -1.73
SSH4	YKL124W	STE50	P25344	346 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	MVD1	P32377	396 aa	Known RBP	4.24	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms