RNA–Protein interactions for RNA: YDL229W

SSB1, Transcript of Cytoplasmic ATPase that is a ribosome-associated molecular chaperone, yeast

Gene SSB1, Length 1,842 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSB1	YDL229W	YJR030C	P47101	745 aa		4.21	□□□□□ -1.74
SSB1	YDL229W	COG5	P53951	403 aa		4.21	□□□□□ -1.74
SSB1	YDL229W	ALO1	P54783	526 aa	Known RBP	4.21	□□□□□ -1.74
SSB1	YDL229W	YCL001W-A	P87012	153 aa		4.21	□□□□□ -1.74
SSB1	YDL229W	PRP38	Q00723	242 aa	Predicted RBP	4.21	□□□□□ -1.74
SSB1	YDL229W	OSH6	Q02201	448 aa		4.21	□□□□□ -1.74
SSB1	YDL229W	CTF19	Q02732	369 aa		4.21	□□□□□ -1.74
SSB1	YDL229W	YMR155W	Q03795	547 aa		4.21	□□□□□ -1.74
SSB1	YDL229W	RSF1	Q05043	376 aa		4.21	□□□□□ -1.74
SSB1	YDL229W	PEX10	Q05568	337 aa		4.21	□□□□□ -1.74
SSB1	YDL229W	YPR078C	Q06813	372 aa		4.21	□□□□□ -1.74
SSB1	YDL229W	SCP1	Q08873	200 aa		4.21	□□□□□ -1.74
SSB1	YDL229W	YOP1	Q12402	180 aa		4.21	□□□□□ -1.74
SSB1	YDL229W	TY3B-I	Q7LHG5	1498 aa	Known RBP	4.2	□□□□□ -1.74
SSB1	YDL229W	CDC28	P00546	298 aa	Known RBP	4.2	□□□□□ -1.74
SSB1	YDL229W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
SSB1	YDL229W	ERR1	P0CX10	437 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	ERR2	P0CX11	437 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	PEP5	P12868	1029 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	ERD2	P18414	219 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	PHO91	P27514	894 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	BEM1	P29366	551 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	DEG1	P31115	442 aa	Known RBP	4.2	□□□□□ -1.74
SSB1	YDL229W	DGR2	P32330	852 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	GCG1	P32656	232 aa	Known RBP	4.2	□□□□□ -1.74
SSB1	YDL229W	HES1	P35843	434 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	EAP1	P36041	632 aa	Known RBP	4.2	□□□□□ -1.74
SSB1	YDL229W	YCR087C-A	P37263	153 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	SRO77	P38163	1010 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	MAP2	P38174	421 aa	Known RBP	4.2	□□□□□ -1.74
SSB1	YDL229W	YBR137W	P38276	179 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	YBR220C	P38318	560 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	POP4	P38336	279 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	FKH1	P40466	484 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	EFM4	P40516	257 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	YKE4	P40544	346 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	THI6	P41835	540 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	AIM22	P47051	409 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	ARH1	P48360	493 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	SLD3	P53135	668 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	ERV14	P53173	138 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	SWC4	P53201	476 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
SSB1	YDL229W	ARE2	P53629	642 aa	Known RBP	4.2	□□□□□ -1.74
SSB1	YDL229W	YNL134C	P53912	376 aa	Known RBP	4.2	□□□□□ -1.74
SSB1	YDL229W	YAP6	Q03935	383 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	URH1	Q04179	340 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	TMA10	Q06177	86 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	CSC1	Q06538	782 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	IWR1	Q07532	353 aa	Predicted RBP	4.2	□□□□□ -1.74
SSB1	YDL229W	TUM1	Q08686	304 aa	Known RBP	4.2	□□□□□ -1.74
SSB1	YDL229W	CSM4	Q08955	156 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	GRX6	Q12438	231 aa		4.2	□□□□□ -1.74
SSB1	YDL229W	TRP5	P00931	707 aa	Known RBP	4.19	□□□□□ -1.74
SSB1	YDL229W	ERG11	P10614	530 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	NHP6A	P11632	93 aa	Known RBP	4.19	□□□□□ -1.74
SSB1	YDL229W	MAS2	P11914	482 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	CYS3	P31373	394 aa	Known RBP	4.19	□□□□□ -1.74
SSB1	YDL229W	ERG3	P32353	365 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	ARO4	P32449	370 aa	Known RBP	4.19	□□□□□ -1.74
SSB1	YDL229W	TGL1	P34163	548 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	CBT1	P36038	271 aa	Predicted RBP	4.19	□□□□□ -1.74
SSB1	YDL229W	SPC34	P36131	295 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	ADH5	P38113	351 aa	Known RBP	4.19	□□□□□ -1.74
SSB1	YDL229W	ICS2	P38284	255 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	RMD6	P39975	231 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	PHM8	P40025	321 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	YMR147W	P40218	223 aa	Known RBP	4.19	□□□□□ -1.74
SSB1	YDL229W	MAM33	P40513	266 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	GDS1	P41913	522 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	RTT101	P47050	842 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	YPT11	P48559	417 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	BIO3	P50277	480 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	PYK2	P52489	506 aa	Known RBP	4.19	□□□□□ -1.74
SSB1	YDL229W	ACS2	P52910	683 aa	Known RBP	4.19	□□□□□ -1.74
SSB1	YDL229W	HCH1	P53834	153 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	MTG1	Q03151	367 aa	Predicted RBP	4.19	□□□□□ -1.74
SSB1	YDL229W	YML037C	Q03703	340 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	TPP1	Q03796	238 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	ROY1	Q04847	553 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	SYC1	Q08553	188 aa	Predicted RBP	4.19	□□□□□ -1.74
SSB1	YDL229W	YOR365C	Q08844	703 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	PDH1	Q12428	516 aa	Known RBP	4.19	□□□□□ -1.74
SSB1	YDL229W	YPR014C	Q6B0W2	109 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	RGS2	Q99188	309 aa		4.19	□□□□□ -1.74
SSB1	YDL229W	ADH2	P00331	348 aa	Known RBP	4.18	□□□□□ -1.74
SSB1	YDL229W	TRP4	P07285	380 aa	Predicted RBP	4.18	□□□□□ -1.74
SSB1	YDL229W	SNF3	P10870	884 aa		4.18	□□□□□ -1.74
SSB1	YDL229W	MET16	P18408	261 aa	Predicted RBP	4.18	□□□□□ -1.74
SSB1	YDL229W	MRPL44	P19956	98 aa		4.18	□□□□□ -1.74
SSB1	YDL229W	SAR1	P20606	190 aa	Known RBP	4.18	□□□□□ -1.74
SSB1	YDL229W	GRX1	P25373	110 aa	Known RBP	4.18	□□□□□ -1.74
SSB1	YDL229W	ARE1	P25628	610 aa		4.18	□□□□□ -1.74
SSB1	YDL229W	AHC2	P25649	128 aa		4.18	□□□□□ -1.74
SSB1	YDL229W	KTR1	P27810	393 aa	Known RBP	4.18	□□□□□ -1.74
SSB1	YDL229W	PRO3	P32263	286 aa	Known RBP	4.18	□□□□□ -1.74
SSB1	YDL229W	UTR4	P32626	227 aa		4.18	□□□□□ -1.74
SSB1	YDL229W	VBA5	P36172	582 aa		4.18	□□□□□ -1.74
SSB1	YDL229W	BIT2	P38346	545 aa		4.18	□□□□□ -1.74
SSB1	YDL229W	WSS1	P38838	269 aa		4.18	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 51.3 ms