RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 IGDCC4Q8TDY8 1250 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 ADGRB1O14514 1584 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 MYL7Q01449 175 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 RILPQ96NA2 401 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 CCT8L2Q96SF2 557 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 SEC31BQ9NQW1 1179 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 HPSEQ9Y251 543 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 SRGNP10124 158 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 GAP43P17677 238 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 LMNB2Q03252 620 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 PABPC4Q13310 644 aaKnown RBP eCLIP20.97■□□□□ 0.951e-12■□□□□ 9.6
USP48-201ENST00000308271 KRT26Q7Z3Y9 468 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 LRRC47Q8N1G4 583 aaKnown RBP20.97■□□□□ 0.95
USP48-201ENST00000308271 IL17RAQ96F46 866 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 ZNF219Q9P2Y4 722 aaPredicted RBP20.97■□□□□ 0.95
USP48-201ENST00000308271 RABGAP1Q9Y3P9 1069 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 ADSSL1Q8N142 457 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 PPM1KQ8N3J5 372 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 CXorf56Q9H5V9 222 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 OVOS2A0A0J9YW53 1432 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 OVOS2Q6IE36 1432 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 LOC102724159A0A0B4J2E5 919 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 NOL3O60936 208 aaKnown RBP20.97■□□□□ 0.95
USP48-201ENST00000308271 PWP2Q15269 919 aaKnown RBP20.97■□□□□ 0.95
USP48-201ENST00000308271 LRRC31Q6UY01 552 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 ZNF473Q8WTR7 871 aaKnown RBP20.97■□□□□ 0.95
USP48-201ENST00000308271 CHMP6Q96FZ7 201 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 SH2D4AQ9H788 454 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 RAB20Q9NX57 234 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 CDC42BPGQ6DT37 1551 aa20.97■□□□□ 0.95
USP48-201ENST00000308271 SCARF1Q14162 830 aa20.96■□□□□ 0.95
USP48-201ENST00000308271 GSG1L2A8MUP6 293 aa20.96■□□□□ 0.95
USP48-201ENST00000308271 DKC1O60832 514 aaKnown RBP eCLIP20.96■□□□□ 0.95
USP48-201ENST00000308271 SGO2Q562F6 1265 aa20.96■□□□□ 0.95
USP48-201ENST00000308271 GUF1Q8N442 669 aaKnown RBP20.96■□□□□ 0.95
USP48-201ENST00000308271 FBXO41Q8TF61 875 aa20.96■□□□□ 0.95
USP48-201ENST00000308271 RBM17Q96I25 401 aaKnown RBP20.96■□□□□ 0.95
USP48-201ENST00000308271 ASAP1Q9ULH1 1129 aa20.96■□□□□ 0.95
USP48-201ENST00000308271 ZBTB1Q9Y2K1 713 aa20.96■□□□□ 0.95
USP48-201ENST00000308271 CFAP73A6NFT4 308 aa20.96■□□□□ 0.95
USP48-201ENST00000308271 CFBP00751 764 aa20.96■□□□□ 0.95
USP48-201ENST00000308271 FOSP01100 380 aaPredicted RBP20.96■□□□□ 0.95
USP48-201ENST00000308271 TRIM65Q6PJ69 517 aa20.96■□□□□ 0.95
USP48-201ENST00000308271 CFAP61Q8NHU2 1237 aa20.96■□□□□ 0.95
USP48-201ENST00000308271 TRIM10Q9UDY6 481 aa20.96■□□□□ 0.95
USP48-201ENST00000308271 H3BQF6 201 aa20.95■□□□□ 0.95
USP48-201ENST00000308271 SH2D4BQ5SQS7 431 aa20.95■□□□□ 0.95
USP48-201ENST00000308271 APBB1IPQ7Z5R6 666 aaPredicted RBP20.95■□□□□ 0.95
USP48-201ENST00000308271 RAB3IL1Q8TBN0 382 aa20.95■□□□□ 0.95
USP48-201ENST00000308271 ERVV-1B6SEH8 477 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 PTPAQ15257 358 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 MAP3K21Q5TCX8 1036 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 USP49Q70CQ1 688 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 MMGT1Q8N4V1 131 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 SH2D3CQ8N5H7 860 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.95■□□□□ 0.94
USP48-201ENST00000308271 SLITRK6Q9H5Y7 841 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 ARHGEF10LQ9HCE6 1279 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 HPS5Q9UPZ3 1129 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 MYO1FO00160 1098 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 BACH1O14867 736 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 GNPATO15228 680 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 GPATCH4Q5T3I0 446 aaKnown RBP20.95■□□□□ 0.94
USP48-201ENST00000308271 NBPF10Q6P3W6 841 aaKnown RBP20.95■□□□□ 0.94
USP48-201ENST00000308271 DDX17Q92841 729 aaKnown RBP20.95■□□□□ 0.94
USP48-201ENST00000308271 PIGSQ96S52 555 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 CARD10Q9BWT7 1032 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 NEXMIFQ5QGS0 1516 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 SAAL1Q96ER3 474 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.95■□□□□ 0.941e-7■■□□□ 11.4
USP48-201ENST00000308271 USP32Q8NFA0 1604 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 FRMPD1Q5SYB0 1578 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 ERCC6L2Q5T890 1561 aa20.95■□□□□ 0.94
USP48-201ENST00000308271 PLA2G4BP0C869 781 aa20.94■□□□□ 0.94
USP48-201ENST00000308271 SKIP12755 728 aa20.94■□□□□ 0.94
USP48-201ENST00000308271 CACNB1Q02641 598 aaPredicted RBP20.94■□□□□ 0.94
USP48-201ENST00000308271 CYP4A11Q02928 519 aa20.94■□□□□ 0.94
USP48-201ENST00000308271 RHOT2Q8IXI1 618 aa20.94■□□□□ 0.94
USP48-201ENST00000308271 ZNF148Q9UQR1 794 aa20.94■□□□□ 0.94
USP48-201ENST00000308271 PTPRUQ92729 1446 aa20.94■□□□□ 0.94
USP48-201ENST00000308271 POC1B-GALNT4F8VUJ3 575 aa20.94■□□□□ 0.94
USP48-201ENST00000308271 LSP1P33241 339 aa20.94■□□□□ 0.94
USP48-201ENST00000308271 TUBB6Q9BUF5 446 aa20.94■□□□□ 0.94
USP48-201ENST00000308271 DDX47Q9H0S4 455 aaKnown RBP20.94■□□□□ 0.94
USP48-201ENST00000308271 BCAP29Q9UHQ4 241 aa20.94■□□□□ 0.94
USP48-201ENST00000308271 SCOCQ9UIL1 159 aa20.94■□□□□ 0.94
USP48-201ENST00000308271 ANAPC5Q9UJX4 755 aa20.94■□□□□ 0.94
USP48-201ENST00000308271 PCDHA1Q9Y5I3 950 aa20.94■□□□□ 0.94
USP48-201ENST00000308271 CPS1P31327 1500 aa20.94■□□□□ 0.94
USP48-201ENST00000308271 CTAGE3PQ8IX95 158 aa20.94■□□□□ 0.94
USP48-201ENST00000308271 SNX24Q9Y343 169 aa20.94■□□□□ 0.94
USP48-201ENST00000308271 CYP27B1O15528 508 aa20.93■□□□□ 0.94
USP48-201ENST00000308271 ZRANB2O95218 330 aaKnown RBP eCLIP20.93■□□□□ 0.94
USP48-201ENST00000308271 BAG2O95816 211 aa20.93■□□□□ 0.94
USP48-201ENST00000308271 CCDC93Q567U6 631 aa20.93■□□□□ 0.94
USP48-201ENST00000308271 MFSD14BQ5SR56 506 aa20.93■□□□□ 0.94
USP48-201ENST00000308271 MIF4GDA9UHW6 222 aaKnown RBP20.93■□□□□ 0.94
USP48-201ENST00000308271 K7ENM7 598 aa20.93■□□□□ 0.94
USP48-201ENST00000308271 PDXDC1Q6P996 788 aa20.93■□□□□ 0.94
USP48-201ENST00000308271 TMED8Q6PL24 325 aaPredicted RBP20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms