RNA–Protein interactions for RNA: YGR074W

SMD1, Transcript of Core Sm protein Sm D1, yeastyeast

Gene SMD1, Length 441 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SMD1YGR074W YML002WP0CF17 737 aa2.07□□□□□ -2.08
SMD1YGR074W MTF1P14908 341 aaKnown RBP2.07□□□□□ -2.08
SMD1YGR074W BUB3P26449 341 aa2.07□□□□□ -2.08
SMD1YGR074W SIN4P32259 974 aa2.07□□□□□ -2.08
SMD1YGR074W PUP2P32379 260 aa2.07□□□□□ -2.08
SMD1YGR074W RIM1P32445 135 aaKnown RBP2.07□□□□□ -2.08
SMD1YGR074W NDC1P32500 655 aa2.07□□□□□ -2.08
SMD1YGR074W RRN10P38204 145 aa2.07□□□□□ -2.08
SMD1YGR074W OLA1P38219 394 aaKnown RBP2.07□□□□□ -2.08
SMD1YGR074W EFM2P38347 419 aa2.07□□□□□ -2.08
SMD1YGR074W PCF11P39081 626 aaPredicted RBP2.07□□□□□ -2.08
SMD1YGR074W VPS52P39904 641 aa2.07□□□□□ -2.08
SMD1YGR074W SHO1P40073 367 aa2.07□□□□□ -2.08
SMD1YGR074W YIL152WP40455 235 aa2.07□□□□□ -2.08
SMD1YGR074W EFM4P40516 257 aa2.07□□□□□ -2.08
SMD1YGR074W VMA13P41807 478 aaKnown RBP2.07□□□□□ -2.08
SMD1YGR074W IKS1P47042 667 aa2.07□□□□□ -2.08
SMD1YGR074W SSN8P47821 323 aa2.07□□□□□ -2.08
SMD1YGR074W PCP1P53259 346 aa2.07□□□□□ -2.08
SMD1YGR074W LSC1P53598 329 aaKnown RBP2.07□□□□□ -2.08
SMD1YGR074W PPM1Q04081 328 aa2.07□□□□□ -2.08
SMD1YGR074W SRL1Q08673 210 aa2.07□□□□□ -2.08
SMD1YGR074W YLL056CQ12177 298 aa2.07□□□□□ -2.08
SMD1YGR074W SCEIP03882 235 aa2.06□□□□□ -2.08
SMD1YGR074W ARG4P04076 463 aaPredicted RBP2.06□□□□□ -2.08
SMD1YGR074W RPL1AP0CX43 217 aaKnown RBP2.06□□□□□ -2.08
SMD1YGR074W RPL1BP0CX44 217 aaKnown RBP2.06□□□□□ -2.08
SMD1YGR074W YFL068WP0CX99 160 aa2.06□□□□□ -2.08
SMD1YGR074W YLL066W-AP0CY00 160 aa2.06□□□□□ -2.08
SMD1YGR074W YLL067W-AP0CY01 160 aa2.06□□□□□ -2.08
SMD1YGR074W YCR100CP25606 316 aa2.06□□□□□ -2.08
SMD1YGR074W HSP104P31539 908 aaKnown RBP2.06□□□□□ -2.08
SMD1YGR074W NDI1P32340 513 aa2.06□□□□□ -2.08
SMD1YGR074W ECM25P32525 599 aa2.06□□□□□ -2.08
SMD1YGR074W SIP2P34164 415 aaKnown RBP2.06□□□□□ -2.08
SMD1YGR074W DAD2P36162 133 aa2.06□□□□□ -2.08
SMD1YGR074W ZTA1P38230 334 aaKnown RBP2.06□□□□□ -2.08
SMD1YGR074W FAD1P38913 306 aa2.06□□□□□ -2.08
SMD1YGR074W CAJ1P39101 391 aa2.06□□□□□ -2.08
SMD1YGR074W TES1P41903 349 aaKnown RBP2.06□□□□□ -2.08
SMD1YGR074W EPL1P43572 832 aa2.06□□□□□ -2.08
SMD1YGR074W HMS2P47175 358 aa2.06□□□□□ -2.08
SMD1YGR074W BRO1P48582 844 aa2.06□□□□□ -2.08
SMD1YGR074W YIP1P53039 248 aa2.06□□□□□ -2.08
SMD1YGR074W DRN1P53255 507 aaKnown RBP2.06□□□□□ -2.08
SMD1YGR074W OCA2P53949 197 aa2.06□□□□□ -2.08
SMD1YGR074W RLI1Q03195 608 aaKnown RBP2.06□□□□□ -2.08
SMD1YGR074W NUP53Q03790 475 aa2.06□□□□□ -2.08
SMD1YGR074W RBA50Q04418 439 aa2.06□□□□□ -2.08
SMD1YGR074W BNA5Q05979 453 aa2.06□□□□□ -2.08
SMD1YGR074W SGT1Q08446 395 aa2.06□□□□□ -2.08
SMD1YGR074W RKM1Q08961 583 aaPredicted RBP2.06□□□□□ -2.08
SMD1YGR074W KEL3Q08979 651 aaPredicted RBP2.06□□□□□ -2.08
SMD1YGR074W CDC21P06785 304 aa2.05□□□□□ -2.08
SMD1YGR074W AMD1P15274 810 aaKnown RBP2.05□□□□□ -2.08
SMD1YGR074W SPO12P17123 173 aa2.05□□□□□ -2.08
SMD1YGR074W YCR043CP25361 127 aa2.05□□□□□ -2.08
SMD1YGR074W RRP7P25368 297 aaPredicted RBP2.05□□□□□ -2.08
SMD1YGR074W PRO3P32263 286 aaKnown RBP2.05□□□□□ -2.08
SMD1YGR074W CYS4P32582 507 aaKnown RBP2.05□□□□□ -2.08
SMD1YGR074W SOR1P35497 357 aaKnown RBP2.05□□□□□ -2.08
SMD1YGR074W YCR041WP37265 110 aa2.05□□□□□ -2.08
SMD1YGR074W ASC1P38011 319 aaKnown RBP2.05□□□□□ -2.08
SMD1YGR074W YBR056WP38081 501 aa2.05□□□□□ -2.08
SMD1YGR074W KAP104P38217 918 aaKnown RBP2.05□□□□□ -2.08
SMD1YGR074W SLX1P38324 304 aa2.05□□□□□ -2.08
SMD1YGR074W KEL1P38853 1164 aaKnown RBP2.05□□□□□ -2.08
SMD1YGR074W LYS1P38998 373 aaRIP-Chip data2.05□□□□□ -2.08not detected
SMD1YGR074W CCT2P39076 527 aaKnown RBP2.05□□□□□ -2.08
SMD1YGR074W YMR147WP40218 223 aaKnown RBP2.05□□□□□ -2.08
SMD1YGR074W YJL070CP40361 888 aa2.05□□□□□ -2.08
SMD1YGR074W VHS2P40463 436 aa2.05□□□□□ -2.08
SMD1YGR074W SAS2P40963 338 aa2.05□□□□□ -2.08
SMD1YGR074W GUF1P46943 645 aa2.05□□□□□ -2.08
SMD1YGR074W TRS85P46944 698 aa2.05□□□□□ -2.08
SMD1YGR074W GWT1P47026 490 aa2.05□□□□□ -2.08
SMD1YGR074W CRZ1P53968 678 aa2.05□□□□□ -2.08
SMD1YGR074W BET5Q03630 159 aa2.05□□□□□ -2.08
SMD1YGR074W YLR456WQ06199 204 aa2.05□□□□□ -2.08
SMD1YGR074W SOR2Q07786 357 aa2.05□□□□□ -2.08
SMD1YGR074W UAF30Q08747 228 aa2.05□□□□□ -2.08
SMD1YGR074W YPL199CQ08954 240 aa2.05□□□□□ -2.08
SMD1YGR074W SMF3Q12078 473 aaPredicted RBP2.05□□□□□ -2.08
SMD1YGR074W RUP1Q12242 671 aa2.05□□□□□ -2.08
SMD1YGR074W RKM5Q12367 367 aa2.05□□□□□ -2.08
SMD1YGR074W FRE6Q12473 712 aa2.05□□□□□ -2.08
SMD1YGR074W SKS1Q12505 502 aa2.05□□□□□ -2.08
SMD1YGR074W TEF1P02994 458 aaKnown RBP2.04□□□□□ -2.08
SMD1YGR074W SNT1P25357 1226 aa2.04□□□□□ -2.08
SMD1YGR074W PPZ1P26570 692 aa2.04□□□□□ -2.08
SMD1YGR074W PHO91P27514 894 aa2.04□□□□□ -2.08
SMD1YGR074W MSP1P28737 362 aa2.04□□□□□ -2.08
SMD1YGR074W SMY1P32364 656 aaKnown RBP2.04□□□□□ -2.08
SMD1YGR074W LAS1P36146 502 aaPredicted RBP2.04□□□□□ -2.08
SMD1YGR074W ATP3P38077 311 aaKnown RBP2.04□□□□□ -2.08
SMD1YGR074W YBL028CP38202 106 aa2.04□□□□□ -2.08
SMD1YGR074W YBP1P38315 674 aa2.04□□□□□ -2.08
SMD1YGR074W SER3P40054 469 aa2.04□□□□□ -2.08
SMD1YGR074W ALG8P40351 577 aa2.04□□□□□ -2.08
SMD1YGR074W YFL067WP43537 175 aa2.04□□□□□ -2.08
Retrieved 100 of 5,963 RNA–protein pairs in 27.8 ms