RNA–Protein interactions for RNA: tA(UGC)A

TGA1, Transcript of Alanine tRNA (tRNA-Ala), predicted by tRNAscan-SE analysis, yeast

Gene TGA1, Length 73 nt, Biotype tRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TGA1	tA(UGC)A	RNT1	Q02555	471 aa		7.74	□□□□□ -1.17
TGA1	tA(UGC)A	BSC2	Q05611	235 aa		7.74	□□□□□ -1.17
TGA1	tA(UGC)A	NMD4	Q12129	218 aa		7.74	□□□□□ -1.17
TGA1	tA(UGC)A	COX1	P00401	534 aa		7.73	□□□□□ -1.17
TGA1	tA(UGC)A	RPS17A	P02407	136 aa	Known RBP	7.73	□□□□□ -1.17
TGA1	tA(UGC)A	AI4	P03878	556 aa		7.73	□□□□□ -1.17
TGA1	tA(UGC)A	PRT1	P06103	763 aa	Known RBP	7.73	□□□□□ -1.17
TGA1	tA(UGC)A	HOM3	P10869	527 aa		7.73	□□□□□ -1.17
TGA1	tA(UGC)A	RPS17B	P14127	136 aa	Known RBP	7.73	□□□□□ -1.17
TGA1	tA(UGC)A	TAH1	P25638	111 aa	Predicted RBP	7.73	□□□□□ -1.17
TGA1	tA(UGC)A	MLS1	P30952	554 aa		7.73	□□□□□ -1.17
TGA1	tA(UGC)A	SSH4	P32343	579 aa		7.73	□□□□□ -1.17
TGA1	tA(UGC)A	KAP122	P32767	1081 aa		7.73	□□□□□ -1.17
TGA1	tA(UGC)A	RPS27A	P35997	82 aa	Known RBP	7.73	□□□□□ -1.17
TGA1	tA(UGC)A	RRN3	P36070	627 aa		7.73	□□□□□ -1.17
TGA1	tA(UGC)A	RPS27B	P38711	82 aa		7.73	□□□□□ -1.17
TGA1	tA(UGC)A	MAD2	P40958	196 aa		7.73	□□□□□ -1.17
TGA1	tA(UGC)A	PSA1	P41940	361 aa	Known RBP	7.73	□□□□□ -1.17
TGA1	tA(UGC)A	RSF1	Q05043	376 aa		7.73	□□□□□ -1.17
TGA1	tA(UGC)A	YDR338C	Q05497	695 aa		7.73	□□□□□ -1.17
TGA1	tA(UGC)A	PDR8	Q06149	701 aa		7.73	□□□□□ -1.17
TGA1	tA(UGC)A	REX4	Q08237	289 aa		7.73	□□□□□ -1.17
TGA1	tA(UGC)A	RUP1	Q12242	671 aa		7.73	□□□□□ -1.17
TGA1	tA(UGC)A	DST1	P07273	309 aa		7.72	□□□□□ -1.17
TGA1	tA(UGC)A	KAR1	P11927	433 aa		7.72	□□□□□ -1.17
TGA1	tA(UGC)A	PRI2	P20457	528 aa		7.72	□□□□□ -1.17
TGA1	tA(UGC)A	DBR1	P24309	405 aa	Known RBP	7.72	□□□□□ -1.17
TGA1	tA(UGC)A	MGR1	P25573	417 aa		7.72	□□□□□ -1.17
TGA1	tA(UGC)A	SPB1	P25582	841 aa	Predicted RBP	7.72	□□□□□ -1.17
TGA1	tA(UGC)A	FAA1	P30624	700 aa	Known RBP	7.72	□□□□□ -1.17
TGA1	tA(UGC)A	STE14	P32584	239 aa		7.72	□□□□□ -1.17
TGA1	tA(UGC)A	EAP1	P36041	632 aa	Known RBP	7.72	□□□□□ -1.17
TGA1	tA(UGC)A	NEO1	P40527	1151 aa		7.72	□□□□□ -1.17
TGA1	tA(UGC)A	BIO3	P50277	480 aa		7.72	□□□□□ -1.17
TGA1	tA(UGC)A	SDT1	P53078	280 aa		7.72	□□□□□ -1.17
TGA1	tA(UGC)A	LCL3	P53153	274 aa		7.72	□□□□□ -1.17
TGA1	tA(UGC)A	YDR124W	Q04608	324 aa		7.72	□□□□□ -1.17
TGA1	tA(UGC)A	GLO2	Q05584	274 aa		7.72	□□□□□ -1.17
TGA1	tA(UGC)A	YPR064W	Q12492	139 aa		7.72	□□□□□ -1.17
TGA1	tA(UGC)A	PET127	P32606	800 aa		7.71	□□□□□ -1.18
TGA1	tA(UGC)A	CAF4	P36130	643 aa		7.71	□□□□□ -1.18
TGA1	tA(UGC)A	APT2	P36973	181 aa		7.71	□□□□□ -1.18
TGA1	tA(UGC)A	YCR087C-A	P37263	153 aa		7.71	□□□□□ -1.18
TGA1	tA(UGC)A	BNA4	P38169	460 aa		7.71	□□□□□ -1.18
TGA1	tA(UGC)A	UTP9	P38882	575 aa	Known RBP	7.71	□□□□□ -1.18
TGA1	tA(UGC)A	TDA10	P42938	290 aa		7.71	□□□□□ -1.18
TGA1	tA(UGC)A	AIM22	P47051	409 aa		7.71	□□□□□ -1.18
TGA1	tA(UGC)A	RAD17	P48581	401 aa		7.71	□□□□□ -1.18
TGA1	tA(UGC)A	NOP19	P53317	196 aa	Predicted RBP	7.71	□□□□□ -1.18
TGA1	tA(UGC)A	YLR413W	Q06689	675 aa		7.71	□□□□□ -1.18
TGA1	tA(UGC)A	MCA1	Q08601	432 aa		7.71	□□□□□ -1.18
TGA1	tA(UGC)A	ESA1	Q08649	445 aa		7.71	□□□□□ -1.18
TGA1	tA(UGC)A	YPL066W	Q12194	479 aa		7.71	□□□□□ -1.18
TGA1	tA(UGC)A	YLL054C	Q12244	843 aa		7.71	□□□□□ -1.18
TGA1	tA(UGC)A	VPS33	P20795	691 aa		7.7	□□□□□ -1.18
TGA1	tA(UGC)A	HEM3	P28789	327 aa		7.7	□□□□□ -1.18
TGA1	tA(UGC)A	SPO23	P33757	523 aa		7.7	□□□□□ -1.18
TGA1	tA(UGC)A	SEF1	P34228	1148 aa		7.7	□□□□□ -1.18
TGA1	tA(UGC)A	LST4	P34239	828 aa		7.7	□□□□□ -1.18
TGA1	tA(UGC)A	HES1	P35843	434 aa		7.7	□□□□□ -1.18
TGA1	tA(UGC)A	OMA1	P36163	345 aa		7.7	□□□□□ -1.18
TGA1	tA(UGC)A	ATG7	P38862	630 aa		7.7	□□□□□ -1.18
TGA1	tA(UGC)A	PRP39	P39682	629 aa	Known RBP	7.7	□□□□□ -1.18
TGA1	tA(UGC)A	SCS2	P40075	244 aa	Known RBP	7.7	□□□□□ -1.18
TGA1	tA(UGC)A	MEP2	P41948	499 aa		7.7	□□□□□ -1.18
TGA1	tA(UGC)A	MUP1	P50276	574 aa		7.7	□□□□□ -1.18
TGA1	tA(UGC)A	YNL140C	P53910	189 aa		7.7	□□□□□ -1.18
TGA1	tA(UGC)A	ELP4	Q02884	456 aa	Known RBP	7.7	□□□□□ -1.18
TGA1	tA(UGC)A	ECM11	Q04110	302 aa		7.7	□□□□□ -1.18
TGA1	tA(UGC)A	BOP2	Q06150	570 aa		7.7	□□□□□ -1.18
TGA1	tA(UGC)A	YEH2	Q07950	538 aa		7.7	□□□□□ -1.18
TGA1	tA(UGC)A	YOL024W	Q08172	172 aa		7.7	□□□□□ -1.18
TGA1	tA(UGC)A	YOL159C	Q08300	171 aa		7.7	□□□□□ -1.18
TGA1	tA(UGC)A	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	7.7	□□□□□ -1.18	not detected
TGA1	tA(UGC)A	ATG34	Q12292	412 aa		7.7	□□□□□ -1.18
TGA1	tA(UGC)A	Q0010	Q9ZZX9	128 aa		7.7	□□□□□ -1.18
TGA1	tA(UGC)A	TRP3	P00937	484 aa		7.69	□□□□□ -1.18
TGA1	tA(UGC)A	COR1	P07256	457 aa		7.69	□□□□□ -1.18
TGA1	tA(UGC)A	SLY41	P22215	453 aa		7.69	□□□□□ -1.18
TGA1	tA(UGC)A	STP22	P25604	385 aa		7.69	□□□□□ -1.18
TGA1	tA(UGC)A	LYP1	P32487	611 aa		7.69	□□□□□ -1.18
TGA1	tA(UGC)A	NIP1	P32497	812 aa	Known RBP	7.69	□□□□□ -1.18
TGA1	tA(UGC)A	LTV1	P34078	463 aa		7.69	□□□□□ -1.18
TGA1	tA(UGC)A	DOA1	P36037	715 aa		7.69	□□□□□ -1.18
TGA1	tA(UGC)A	YBR062C	P38239	180 aa		7.69	□□□□□ -1.18
TGA1	tA(UGC)A	BZZ1	P38822	633 aa		7.69	□□□□□ -1.18
TGA1	tA(UGC)A	YEN1	P40028	759 aa		7.69	□□□□□ -1.18
TGA1	tA(UGC)A	PAC11	P40960	533 aa		7.69	□□□□□ -1.18
TGA1	tA(UGC)A	RPL10	P41805	221 aa	Known RBP	7.69	□□□□□ -1.18
TGA1	tA(UGC)A	IKS1	P47042	667 aa		7.69	□□□□□ -1.18
TGA1	tA(UGC)A	TIM54	P47045	478 aa		7.69	□□□□□ -1.18
TGA1	tA(UGC)A	TAF6	P53040	516 aa		7.69	□□□□□ -1.18
TGA1	tA(UGC)A	PRP38	Q00723	242 aa	Predicted RBP	7.69	□□□□□ -1.18
TGA1	tA(UGC)A	YKL018C-A	Q3E7A7	99 aa		7.69	□□□□□ -1.18
TGA1	tA(UGC)A	YPR096C	O13587	100 aa		7.68	□□□□□ -1.18
TGA1	tA(UGC)A	HTA2	P04912	132 aa		7.68	□□□□□ -1.18
TGA1	tA(UGC)A	GCD2	P12754	651 aa	Predicted RBP	7.68	□□□□□ -1.18
TGA1	tA(UGC)A	SYP1	P25623	870 aa	Known RBP	7.68	□□□□□ -1.18
TGA1	tA(UGC)A	PMT2	P31382	759 aa		7.68	□□□□□ -1.18
TGA1	tA(UGC)A	OAR1	P35731	278 aa		7.68	□□□□□ -1.18

Retrieved 100 of 5,963 RNA–protein pairs in 57.4 ms