RNA–Protein interactions for RNA: YLR260W

LCB5, Transcript of Minor sphingoid long-chain base kinase, yeast

Gene LCB5, Length 2,064 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB5	YLR260W	IAH1	P41734	238 aa		3.56	□□□□□ -1.84
LCB5	YLR260W	LOC1	P43586	204 aa	Predicted RBP	3.56	□□□□□ -1.84
LCB5	YLR260W	MPP6	P53725	186 aa	Predicted RBP	3.56	□□□□□ -1.84
LCB5	YLR260W	SEG1	Q04279	960 aa		3.56	□□□□□ -1.84
LCB5	YLR260W	HBT1	Q07653	1046 aa	Known RBP	3.56	□□□□□ -1.84
LCB5	YLR260W	MCA1	Q08601	432 aa		3.56	□□□□□ -1.84
LCB5	YLR260W	PUS7	Q08647	676 aa	Known RBP	3.56	□□□□□ -1.84
LCB5	YLR260W	HRK1	Q08732	759 aa	Known RBP	3.56	□□□□□ -1.84
LCB5	YLR260W	LEA1	Q08963	238 aa	Predicted RBP	3.56	□□□□□ -1.84
LCB5	YLR260W	YVC1	Q12324	675 aa		3.56	□□□□□ -1.84
LCB5	YLR260W	HRT3	Q12347	344 aa		3.56	□□□□□ -1.84
LCB5	YLR260W	MSS116	P15424	664 aa	Known RBP	3.55	□□□□□ -1.84
LCB5	YLR260W	RFA1	P22336	621 aa	Known RBP	3.55	□□□□□ -1.84
LCB5	YLR260W	ERG8	P24521	451 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	PUP3	P25451	205 aa	Known RBP	3.55	□□□□□ -1.84
LCB5	YLR260W	EMC1	P25574	760 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	ITR1	P30605	584 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	SRB4	P32569	687 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	ELM1	P32801	640 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	ALY1	P36117	915 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	GLG1	P36143	616 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	THI2	P38141	450 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	RRT2	P38332	387 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	ARP1	P38696	384 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	GIC1	P38785	314 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	3.55	□□□□□ -1.84	not detected
LCB5	YLR260W	HYR1	P40581	163 aa	Known RBP	3.55	□□□□□ -1.84
LCB5	YLR260W	YFL054C	P43549	646 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	ASG7	P46993	209 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	AAD10	P47182	288 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	MNT4	P53745	580 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	YNL143C	P53908	130 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	NGL2	Q03264	515 aa	Known RBP	3.55	□□□□□ -1.84
LCB5	YLR260W	TPP1	Q03796	238 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	PPM1	Q04081	328 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	ERV41	Q04651	352 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	SSQ1	Q05931	657 aa	Predicted RBP	3.55	□□□□□ -1.84
LCB5	YLR260W	BOP2	Q06150	570 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	STP4	Q07351	490 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	GIS3	Q12418	502 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	SPE4	Q12455	300 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	CUP1-1	P0CX80	61 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	CUP1-2	P0CX81	61 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	ARG1	P22768	420 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	BOS1	P25385	244 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	PEX34	P25584	144 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	AFG1	P32317	509 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	RPC25	P35718	212 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	YKL023W	P36103	277 aa	Known RBP	3.55	□□□□□ -1.84
LCB5	YLR260W	DUG2	P38149	878 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	CEP3	P40969	608 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	EFM3	P47163	339 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	CSL4	P53859	292 aa	Predicted RBP	3.55	□□□□□ -1.84
LCB5	YLR260W	URC2	Q04411	772 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	BCP1	Q06338	283 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	YPR196W	Q06595	470 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	ABP140	Q08641	628 aa	Known RBP	3.55	□□□□□ -1.84
LCB5	YLR260W	UAF30	Q08747	228 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	YPQ1	Q12010	308 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	ULA1	Q12059	462 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	HOS1	Q12214	470 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	SUL2	Q12325	893 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	YJR112W-A	Q3E743	109 aa		3.55	□□□□□ -1.84
LCB5	YLR260W	TFB5	Q3E7C1	72 aa	Predicted RBP	3.55	□□□□□ -1.84
LCB5	YLR260W	CBP2	P03874	630 aa	Predicted RBP	3.54	□□□□□ -1.84
LCB5	YLR260W	TPK2	P06245	380 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	RPS14A	P06367	137 aa	Known RBP	3.54	□□□□□ -1.84
LCB5	YLR260W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	3.54	□□□□□ -1.84	not detected
LCB5	YLR260W	HMG2	P12684	1045 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	GCD2	P12754	651 aa	Predicted RBP	3.54	□□□□□ -1.84
LCB5	YLR260W	DAL81	P21657	970 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	SAT4	P25333	603 aa	Known RBP	3.54	□□□□□ -1.84
LCB5	YLR260W	LRG1	P35688	1017 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	SFB3	P38810	929 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	MNN9	P39107	395 aa	Known RBP	3.54	□□□□□ -1.84
LCB5	YLR260W	RPS14B	P39516	138 aa	Known RBP	3.54	□□□□□ -1.84
LCB5	YLR260W	FTR1	P40088	404 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	YFR018C	P43599	363 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	CPR7	P47103	393 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	YNL144C	P53907	740 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	ATG21	Q02887	496 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	KAP120	Q02932	1032 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	MUB1	Q03162	620 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	PRM6	Q04705	352 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	YLR297W	Q05899	129 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	BSP1	Q06604	576 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	YEH1	Q07804	573 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	GSH2	Q08220	491 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	TRE1	Q08919	783 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	THI21	Q08975	551 aa		3.54	□□□□□ -1.84
LCB5	YLR260W	LYS21	Q12122	440 aa	Known RBP	3.54	□□□□□ -1.84
LCB5	YLR260W	STE2	D6VTK4	431 aa		3.53	□□□□□ -1.84
LCB5	YLR260W	FUS3	P16892	353 aa	Known RBP	3.53	□□□□□ -1.84
LCB5	YLR260W	RNR1	P21524	888 aa	Known RBP	3.53	□□□□□ -1.84
LCB5	YLR260W	RPI1	P23250	407 aa	Known RBP	3.53	□□□□□ -1.84
LCB5	YLR260W	BUD14	P27637	709 aa		3.53	□□□□□ -1.84
LCB5	YLR260W	FRE1	P32791	686 aa		3.53	□□□□□ -1.84
LCB5	YLR260W	YSC84	P32793	468 aa		3.53	□□□□□ -1.84
LCB5	YLR260W	PTR2	P32901	601 aa		3.53	□□□□□ -1.84
LCB5	YLR260W	AUR1	P36107	401 aa	Predicted RBP	3.53	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 38.9 ms