RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeastyeast

Gene RRP40, Length 723 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RRP40YOL142W ERF2Q06551 359 aa9.57□□□□□ -0.88
RRP40YOL142W TY1A-DR4O74302 440 aa9.56□□□□□ -0.88
RRP40YOL142W TY1A-HP0C2I4 478 aaKnown RBP9.56□□□□□ -0.88
RRP40YOL142W TY1A-AP0CX57 440 aa9.56□□□□□ -0.88
RRP40YOL142W TY1A-PR1P0CX58 440 aa9.56□□□□□ -0.88
RRP40YOL142W TY1A-ORP0CX59 440 aa9.56□□□□□ -0.88
RRP40YOL142W TY1A-PR2P0CX60 440 aa9.56□□□□□ -0.88
RRP40YOL142W TY1A-DR5P0CX65 440 aa9.56□□□□□ -0.88
RRP40YOL142W TY1A-ER2P0CX66 440 aa9.56□□□□□ -0.88
RRP40YOL142W TY1A-GR3P0CX67 440 aa9.56□□□□□ -0.88
RRP40YOL142W TY1A-LR1P0CX68 440 aa9.56□□□□□ -0.88
RRP40YOL142W TY1A-MR2P0CX69 440 aa9.56□□□□□ -0.88
RRP40YOL142W GCD11P32481 527 aaKnown RBP9.56□□□□□ -0.88
RRP40YOL142W TY1A-JR2P47099 440 aa9.56□□□□□ -0.88
RRP40YOL142W TY1A-DR1Q03856 440 aa9.56□□□□□ -0.88
RRP40YOL142W TY1A-ML1Q04706 440 aaKnown RBP9.56□□□□□ -0.88
RRP40YOL142W TY1A-BRQ12217 440 aa9.56□□□□□ -0.88
RRP40YOL142W TY1A-NL2Q12470 440 aa9.56□□□□□ -0.88
RRP40YOL142W TY1A-GR2Q12485 440 aa9.56□□□□□ -0.88
RRP40YOL142W PRT1P06103 763 aaKnown RBP9.55□□□□□ -0.88
RRP40YOL142W RTF1P53064 558 aa9.55□□□□□ -0.88
RRP40YOL142W HST2P53686 357 aa9.55□□□□□ -0.88
RRP40YOL142W SEC2P17065 759 aa9.54□□□□□ -0.88
RRP40YOL142W YNL115CP53925 644 aa9.54□□□□□ -0.88
RRP40YOL142W GYP1Q08484 637 aa9.53□□□□□ -0.88
RRP40YOL142W CSN12P47130 423 aa9.52□□□□□ -0.89
RRP40YOL142W TYW1Q08960 810 aaKnown RBP9.52□□□□□ -0.89
RRP40YOL142W SCJ1P25303 377 aa9.51□□□□□ -0.89
RRP40YOL142W KTR1P27810 393 aaKnown RBP9.51□□□□□ -0.89
RRP40YOL142W GUA1P38625 525 aaKnown RBP9.51□□□□□ -0.89
RRP40YOL142W MMP1Q12372 583 aa9.51□□□□□ -0.89
RRP40YOL142W GLN1P32288 370 aaKnown RBP9.5□□□□□ -0.89
RRP40YOL142W XDJ1P39102 459 aa9.5□□□□□ -0.89
RRP40YOL142W SAS4Q04003 481 aa9.49□□□□□ -0.89
RRP40YOL142W SLY41P22215 453 aa9.48□□□□□ -0.89
RRP40YOL142W ESS1P22696 170 aa9.46□□□□□ -0.9
RRP40YOL142W SSA2P10592 639 aaKnown RBP9.44□□□□□ -0.9
RRP40YOL142W AGE1Q04412 482 aa9.44□□□□□ -0.9
RRP40YOL142W RRN7P40992 514 aa9.43□□□□□ -0.9
RRP40YOL142W TUB4P53378 473 aa9.42□□□□□ -0.9
RRP40YOL142W YJU3P28321 313 aa9.41□□□□□ -0.9
RRP40YOL142W SPT16P32558 1035 aaKnown RBP9.41□□□□□ -0.9
RRP40YOL142W SDH2P21801 266 aa9.4□□□□□ -0.9
RRP40YOL142W HPC2Q01448 625 aa9.4□□□□□ -0.9
RRP40YOL142W PKH3Q03306 898 aaPredicted RBP9.4□□□□□ -0.9
RRP40YOL142W PAT1P25644 796 aaKnown RBP9.39□□□□□ -0.91
RRP40YOL142W PAC1P39946 494 aaKnown RBP9.39□□□□□ -0.91
RRP40YOL142W PUS6P53294 404 aa9.38□□□□□ -0.91
RRP40YOL142W TRM1P15565 570 aaKnown RBP9.37□□□□□ -0.91
RRP40YOL142W MRF1P30775 413 aaPredicted RBP9.37□□□□□ -0.91
RRP40YOL142W BUB1P41695 1021 aaKnown RBP RIP-Chip data9.35□□□□□ -0.91not detected
RRP40YOL142W LAM6Q08001 693 aa9.34□□□□□ -0.91
RRP40YOL142W RAD59Q12223 238 aa9.34□□□□□ -0.91
RRP40YOL142W ARG8P18544 423 aa9.33□□□□□ -0.92
RRP40YOL142W RSC30P38781 883 aa9.33□□□□□ -0.92
RRP40YOL142W TBF1Q02457 562 aa9.33□□□□□ -0.92
RRP40YOL142W TFB3Q03290 321 aa9.33□□□□□ -0.92
RRP40YOL142W ERG12P07277 443 aa9.32□□□□□ -0.92
RRP40YOL142W BRL1P38770 471 aa9.31□□□□□ -0.92
RRP40YOL142W DMA2P53924 522 aa9.3□□□□□ -0.92
RRP40YOL142W YDL206WQ12424 762 aa9.3□□□□□ -0.92
RRP40YOL142W RPA14P50106 137 aa9.28□□□□□ -0.92
RRP40YOL142W YEL077CQ3E7X8 1277 aa9.28□□□□□ -0.92
RRP40YOL142W AMS1P22855 1083 aa9.27□□□□□ -0.93
RRP40YOL142W KXD1P53158 218 aa9.27□□□□□ -0.93
RRP40YOL142W PDC1P06169 563 aaKnown RBP9.26□□□□□ -0.93
RRP40YOL142W MOD5P07884 428 aa9.26□□□□□ -0.93
RRP40YOL142W PKC1P24583 1151 aa9.26□□□□□ -0.93
RRP40YOL142W DPS1P04802 557 aaKnown RBP9.25□□□□□ -0.93
RRP40YOL142W CST6P40535 587 aa9.25□□□□□ -0.93
RRP40YOL142W ALR1Q08269 859 aa9.25□□□□□ -0.93
RRP40YOL142W HGH1P48362 394 aaKnown RBP9.24□□□□□ -0.93
RRP40YOL142W YPR097WQ06839 1073 aa9.24□□□□□ -0.93
RRP40YOL142W RAS1P01119 309 aa9.23□□□□□ -0.93
RRP40YOL142W HXT10P43581 546 aa9.23□□□□□ -0.93
RRP40YOL142W TPD3P31383 635 aa9.22□□□□□ -0.93
RRP40YOL142W BDP1P46678 594 aa9.22□□□□□ -0.93
RRP40YOL142W FRK1Q03002 865 aaPredicted RBP9.21□□□□□ -0.94
RRP40YOL142W YBL036CP38197 257 aa9.2□□□□□ -0.94
RRP40YOL142W RRD1P40454 393 aaKnown RBP9.19□□□□□ -0.94
RRP40YOL142W CSE4P36012 229 aa9.18□□□□□ -0.94
RRP40YOL142W MAK16P10962 306 aaPredicted RBP9.17□□□□□ -0.94
RRP40YOL142W PUS5Q06244 254 aa9.14□□□□□ -0.95
RRP40YOL142W BIO2P32451 375 aa9.11□□□□□ -0.95
RRP40YOL142W YJL007CP47080 104 aa9.11□□□□□ -0.95
RRP40YOL142W CLA4P48562 842 aa9.09□□□□□ -0.95
RRP40YOL142W NAF1P53919 492 aaKnown RBP9.09□□□□□ -0.95
RRP40YOL142W VAC17P25591 423 aa9.08□□□□□ -0.96
RRP40YOL142W SPT5P27692 1063 aaKnown RBP9.08□□□□□ -0.96
RRP40YOL142W FIG4P42837 879 aa9.08□□□□□ -0.96
RRP40YOL142W BIM1P40013 344 aa9.07□□□□□ -0.96
RRP40YOL142W HED1Q03937 162 aa9.07□□□□□ -0.96
RRP40YOL142W KIP2P28743 706 aa9.06□□□□□ -0.96
RRP40YOL142W SYH1Q02875 849 aaKnown RBP9.06□□□□□ -0.96
RRP40YOL142W TEC1P18412 486 aa9.05□□□□□ -0.96
RRP40YOL142W YDJ1P25491 409 aaKnown RBP9.05□□□□□ -0.96
RRP40YOL142W ATG32P40458 529 aa9.04□□□□□ -0.96
RRP40YOL142W YNL108CP53929 270 aa9.04□□□□□ -0.96
RRP40YOL142W IXR1P33417 597 aa9.03□□□□□ -0.96
RRP40YOL142W AIR1P40507 360 aaKnown RBP9.03□□□□□ -0.96
Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms