RNA–Protein interactions for RNA: YOL110W

SHR5, Transcript of Palmitoyltransferase subunit, yeast

Gene SHR5, Length 714 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHR5	YOL110W	PSK1	P31374	1356 aa		19.38	■□□□□ 0.69
SHR5	YOL110W	PPH3	P32345	308 aa		19.37	■□□□□ 0.69
SHR5	YOL110W	PDS5	Q04264	1277 aa		19.3	■□□□□ 0.68
SHR5	YOL110W	MLP1	Q02455	1875 aa	Known RBP	19.27	■□□□□ 0.68
SHR5	YOL110W	FKH1	P40466	484 aa		19.23	■□□□□ 0.67
SHR5	YOL110W	SEC3	P33332	1336 aa	Known RBP	19.23	■□□□□ 0.67
SHR5	YOL110W	YML133C	Q03099	1374 aa		19.21	■□□□□ 0.67
SHR5	YOL110W	YLL067C	Q07888	1374 aa		19.21	■□□□□ 0.67
SHR5	YOL110W	YLL066C	Q99208	1374 aa		19.21	■□□□□ 0.67
SHR5	YOL110W	PTP3	P40048	928 aa		19.21	■□□□□ 0.67
SHR5	YOL110W	RTG3	P38165	486 aa		19.2	■□□□□ 0.66
SHR5	YOL110W	LEU2	P04173	364 aa	Predicted RBP	19.19	■□□□□ 0.66
SHR5	YOL110W	MTR4	P47047	1073 aa	Known RBP	19.18	■□□□□ 0.66
SHR5	YOL110W	ADE6	P38972	1358 aa	Known RBP	19.18	■□□□□ 0.66
SHR5	YOL110W	TY4B-H	P0C2J7	1802 aa		19.14	■□□□□ 0.65
SHR5	YOL110W	TY4B-J	P47024	1803 aa		19.14	■□□□□ 0.65
SHR5	YOL110W	SPT7	P35177	1332 aa		19.09	■□□□□ 0.65
SHR5	YOL110W	CSE4	P36012	229 aa		19.08	■□□□□ 0.64
SHR5	YOL110W	PSD2	P53037	1138 aa	Known RBP	19.08	■□□□□ 0.64
SHR5	YOL110W	RRP5	Q05022	1729 aa	Known RBP	19.06	■□□□□ 0.64
SHR5	YOL110W	PRP43	P53131	767 aa	Known RBP	19.06	■□□□□ 0.64
SHR5	YOL110W	RPS24A	P0CX31	135 aa	Known RBP	19.04	■□□□□ 0.64
SHR5	YOL110W	RPS24B	P0CX32	135 aa	Known RBP	19.04	■□□□□ 0.64
SHR5	YOL110W	PDI1	P17967	522 aa	Known RBP	19.03	■□□□□ 0.64
SHR5	YOL110W	PRP45	P28004	379 aa	Predicted RBP	19.03	■□□□□ 0.64
SHR5	YOL110W	RTF1	P53064	558 aa		19.01	■□□□□ 0.63
SHR5	YOL110W	YAH1	Q12184	172 aa	Known RBP	19	■□□□□ 0.63
SHR5	YOL110W	LEU3	P08638	886 aa		18.99	■□□□□ 0.63
SHR5	YOL110W	PRP5	P21372	849 aa	Predicted RBP	18.99	■□□□□ 0.63
SHR5	YOL110W	NST1	P53935	1240 aa		18.99	■□□□□ 0.63
SHR5	YOL110W	REB1	P21538	810 aa		18.96	■□□□□ 0.63
SHR5	YOL110W	TAP42	Q04372	366 aa		18.96	■□□□□ 0.63
SHR5	YOL110W	APP1	P53933	587 aa		18.94	■□□□□ 0.62
SHR5	YOL110W	ENT1	Q12518	454 aa		18.93	■□□□□ 0.62
SHR5	YOL110W	GRX4	P32642	244 aa		18.92	■□□□□ 0.62
SHR5	YOL110W	DPS1	P04802	557 aa	Known RBP	18.89	■□□□□ 0.61
SHR5	YOL110W	KAR2	P16474	682 aa	Known RBP	18.89	■□□□□ 0.61
SHR5	YOL110W	YEF3	P16521	1044 aa	Known RBP	18.89	■□□□□ 0.61
SHR5	YOL110W	MSB3	P48566	633 aa	Predicted RBP	18.88	■□□□□ 0.61
SHR5	YOL110W	GAS4	Q08271	471 aa		18.88	■□□□□ 0.61
SHR5	YOL110W	AUS1	Q08409	1394 aa		18.88	■□□□□ 0.61
SHR5	YOL110W	YRF1-2	P40105	1681 aa		18.88	■□□□□ 0.61
SHR5	YOL110W	HIM1	Q06674	414 aa		18.85	■□□□□ 0.61
SHR5	YOL110W	TRK1	P12685	1235 aa		18.84	■□□□□ 0.61
SHR5	YOL110W	ENV9	Q08651	330 aa		18.84	■□□□□ 0.61
SHR5	YOL110W	SLM3	Q12093	417 aa		18.84	■□□□□ 0.61
SHR5	YOL110W	YIL177C	P40434	1758 aa		18.83	■□□□□ 0.6
SHR5	YOL110W	YJL225C	P40889	1758 aa		18.83	■□□□□ 0.6
SHR5	YOL110W	ENP1	P38333	483 aa	Known RBP	18.82	■□□□□ 0.6
SHR5	YOL110W	TCB1	Q12466	1186 aa		18.81	■□□□□ 0.6
SHR5	YOL110W	FKS3	Q04952	1785 aa		18.78	■□□□□ 0.6
SHR5	YOL110W	PAP2	P53632	584 aa	Known RBP	18.75	■□□□□ 0.59
SHR5	YOL110W	IMH1	Q06704	911 aa	Known RBP	18.75	■□□□□ 0.59
SHR5	YOL110W	RSF2	P46974	1380 aa		18.75	■□□□□ 0.59
SHR5	YOL110W	URB1	P34241	1764 aa	Known RBP	18.74	■□□□□ 0.59
SHR5	YOL110W	RPO41	P13433	1351 aa	Known RBP	18.74	■□□□□ 0.59
SHR5	YOL110W	XKS1	P42826	600 aa		18.7	■□□□□ 0.58
SHR5	YOL110W	APC1	P53886	1748 aa		18.7	■□□□□ 0.58
SHR5	YOL110W	SNF2	P22082	1703 aa		18.69	■□□□□ 0.58
SHR5	YOL110W	YIL055C	P40523	627 aa	Known RBP	18.69	■□□□□ 0.58
SHR5	YOL110W	IOC4	Q04213	475 aa		18.69	■□□□□ 0.58
SHR5	YOL110W	IES2	P40154	320 aa		18.67	■□□□□ 0.58
SHR5	YOL110W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	18.63	■□□□□ 0.57	not detected
SHR5	YOL110W	RRP46	P53256	223 aa	Predicted RBP	18.61	■□□□□ 0.57
SHR5	YOL110W	SIR4	P11978	1358 aa		18.59	■□□□□ 0.57
SHR5	YOL110W	RTR1	P40084	226 aa	Predicted RBP	18.59	■□□□□ 0.57
SHR5	YOL110W	AKL1	P38080	1108 aa	Known RBP	18.56	■□□□□ 0.56
SHR5	YOL110W	RCR1	P38212	213 aa		18.56	■□□□□ 0.56
SHR5	YOL110W	YRF1-3	P0CX14	1859 aa		18.56	■□□□□ 0.56
SHR5	YOL110W	YRF1-7	P0CX15	1859 aa		18.56	■□□□□ 0.56
SHR5	YOL110W	YRF1-6	P53819	1859 aa		18.56	■□□□□ 0.56
SHR5	YOL110W	ROM2	P51862	1356 aa	Known RBP	18.55	■□□□□ 0.56
SHR5	YOL110W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	18.55	■□□□□ 0.56	not detected
SHR5	YOL110W	DSD1	P53095	428 aa		18.55	■□□□□ 0.56
SHR5	YOL110W	YDL144C	Q07589	356 aa		18.54	■□□□□ 0.56
SHR5	YOL110W	YKL133C	P36066	463 aa		18.52	■□□□□ 0.56
SHR5	YOL110W	MEC3	Q02574	474 aa		18.52	■□□□□ 0.56
SHR5	YOL110W	HSP104	P31539	908 aa	Known RBP	18.5	■□□□□ 0.55
SHR5	YOL110W	YRF1-4	O13559	1382 aa		18.5	■□□□□ 0.55
SHR5	YOL110W	RPP0	P05317	312 aa	Known RBP	18.49	■□□□□ 0.55
SHR5	YOL110W	MPP10	P47083	593 aa	Known RBP	18.49	■□□□□ 0.55
SHR5	YOL110W	PRD1	P25375	712 aa		18.48	■□□□□ 0.55
SHR5	YOL110W	CTF4	Q01454	927 aa		18.47	■□□□□ 0.55
SHR5	YOL110W	GLN1	P32288	370 aa	Known RBP	18.46	■□□□□ 0.55
SHR5	YOL110W	DOT5	P40553	215 aa		18.46	■□□□□ 0.55
SHR5	YOL110W	YMR074C	Q04773	145 aa		18.45	■□□□□ 0.54
SHR5	YOL110W	VPS27	P40343	622 aa	Known RBP	18.42	■□□□□ 0.54
SHR5	YOL110W	ADE16	P54113	591 aa	Known RBP	18.42	■□□□□ 0.54
SHR5	YOL110W	FOX2	Q02207	900 aa	Known RBP	18.42	■□□□□ 0.54
SHR5	YOL110W	AOS1	Q06624	347 aa		18.42	■□□□□ 0.54
SHR5	YOL110W	PRS1	P32895	427 aa	Known RBP	18.41	■□□□□ 0.54
SHR5	YOL110W	FRK1	Q03002	865 aa	Predicted RBP	18.41	■□□□□ 0.54
SHR5	YOL110W	INP54	Q08227	384 aa	Known RBP	18.41	■□□□□ 0.54
SHR5	YOL110W	THI22	Q06490	572 aa		18.4	■□□□□ 0.54
SHR5	YOL110W	NTH2	P35172	780 aa		18.39	■□□□□ 0.53
SHR5	YOL110W	CDC45	Q08032	650 aa		18.39	■□□□□ 0.53
SHR5	YOL110W	COB	P00163	385 aa		18.37	■□□□□ 0.53
SHR5	YOL110W	YNL050C	P53952	270 aa		18.36	■□□□□ 0.53
SHR5	YOL110W	ATG13	Q06628	738 aa		18.36	■□□□□ 0.53
SHR5	YOL110W	NUP145	P49687	1317 aa		18.35	■□□□□ 0.53

Retrieved 100 of 5,963 RNA–protein pairs in 30.1 ms