RNA–Protein interactions for RNA: YNL232W

CSL4, Transcript of Exosome non-catalytic core component, yeast

Gene CSL4, Length 879 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CSL4	YNL232W	TOP2	P06786	1428 aa	Known RBP	10.33	□□□□□ -0.76
CSL4	YNL232W	MID1	P41821	548 aa		10.32	□□□□□ -0.76
CSL4	YNL232W	TRM732	Q03496	1420 aa		10.32	□□□□□ -0.76
CSL4	YNL232W	DRS2	P39524	1355 aa		10.29	□□□□□ -0.76
CSL4	YNL232W	MPH3	P0CE00	602 aa		10.28	□□□□□ -0.76
CSL4	YNL232W	NOP53	Q12080	455 aa	Known RBP	10.28	□□□□□ -0.76
CSL4	YNL232W	TY1B-JR2	P47100	1755 aa	Known RBP	10.27	□□□□□ -0.77
CSL4	YNL232W	TY1B-ER2	Q03619	1755 aa		10.27	□□□□□ -0.77
CSL4	YNL232W	TY1B-MR1	Q04214	1755 aa		10.27	□□□□□ -0.77
CSL4	YNL232W	TY1B-MR2	Q04670	1755 aa	Known RBP	10.27	□□□□□ -0.77
CSL4	YNL232W	TY1B-LR1	Q12088	1755 aa	Known RBP	10.27	□□□□□ -0.77
CSL4	YNL232W	TY1B-NL1	Q12112	1755 aa		10.27	□□□□□ -0.77
CSL4	YNL232W	TY1B-GR1	Q12141	1755 aa		10.27	□□□□□ -0.77
CSL4	YNL232W	TY1B-BL	Q12490	1755 aa		10.27	□□□□□ -0.77
CSL4	YNL232W	DNF2	Q12675	1612 aa		10.27	□□□□□ -0.77
CSL4	YNL232W	AI4	P03878	556 aa		10.27	□□□□□ -0.77
CSL4	YNL232W	ILV3	P39522	585 aa	Known RBP	10.27	□□□□□ -0.77
CSL4	YNL232W	ELP4	Q02884	456 aa	Known RBP	10.27	□□□□□ -0.77
CSL4	YNL232W	VPS15	P22219	1454 aa		10.27	□□□□□ -0.77
CSL4	YNL232W	NUP159	P40477	1460 aa		10.25	□□□□□ -0.77
CSL4	YNL232W	NTE1	Q04958	1679 aa		10.22	□□□□□ -0.77
CSL4	YNL232W	YGR273C	P53329	174 aa		10.22	□□□□□ -0.77
CSL4	YNL232W	ARH1	P48360	493 aa		10.21	□□□□□ -0.77
CSL4	YNL232W	VRP1	P37370	817 aa		10.19	□□□□□ -0.78
CSL4	YNL232W	PEX29	Q03370	554 aa		10.18	□□□□□ -0.78
CSL4	YNL232W	RPO21	P04050	1733 aa	Known RBP	10.18	□□□□□ -0.78
CSL4	YNL232W	SPP41	P38904	1435 aa		10.14	□□□□□ -0.79
CSL4	YNL232W	XDJ1	P39102	459 aa		10.11	□□□□□ -0.79
CSL4	YNL232W	SET1	P38827	1080 aa	Known RBP	10.1	□□□□□ -0.79
CSL4	YNL232W	MPC54	Q08550	464 aa		10.1	□□□□□ -0.79
CSL4	YNL232W	POL1	P13382	1468 aa		10.1	□□□□□ -0.79
CSL4	YNL232W	SMC4	Q12267	1418 aa		10.09	□□□□□ -0.79
CSL4	YNL232W	SPT23	P35210	1082 aa		10.09	□□□□□ -0.79
CSL4	YNL232W	HAP5	Q02516	242 aa		10.09	□□□□□ -0.79
CSL4	YNL232W	SLI15	P38283	698 aa		10.08	□□□□□ -0.8
CSL4	YNL232W	NUP170	P38181	1502 aa		10.07	□□□□□ -0.8
CSL4	YNL232W	VTH1	P40438	1549 aa		10.07	□□□□□ -0.8
CSL4	YNL232W	VTH2	P40890	1549 aa		10.07	□□□□□ -0.8
CSL4	YNL232W	YOR093C	Q12275	1648 aa		10.07	□□□□□ -0.8
CSL4	YNL232W	YOR1	P53049	1477 aa		10.07	□□□□□ -0.8
CSL4	YNL232W	TSC11	P40061	1430 aa		10.07	□□□□□ -0.8
CSL4	YNL232W	SPO14	P36126	1683 aa		10.04	□□□□□ -0.8
CSL4	YNL232W	DOP1	Q03921	1698 aa		10.03	□□□□□ -0.8
CSL4	YNL232W	KEX1	P09620	729 aa		10.02	□□□□□ -0.81
CSL4	YNL232W	BNI4	P53858	892 aa		10.02	□□□□□ -0.81
CSL4	YNL232W	STU1	P38198	1513 aa		10.01	□□□□□ -0.81
CSL4	YNL232W	NMA111	P53920	997 aa		10	□□□□□ -0.81
CSL4	YNL232W	SNT2	P53127	1403 aa		9.99	□□□□□ -0.81
CSL4	YNL232W	DPL1	Q05567	589 aa		9.98	□□□□□ -0.81
CSL4	YNL232W	ULS1	Q08562	1619 aa		9.97	□□□□□ -0.81
CSL4	YNL232W	PTC2	P39966	464 aa	Known RBP	9.97	□□□□□ -0.81
CSL4	YNL232W	UBP14	P38237	781 aa	Known RBP	9.96	□□□□□ -0.82
CSL4	YNL232W	YML082W	Q04533	649 aa	Known RBP	9.95	□□□□□ -0.82
CSL4	YNL232W	YLR326W	Q06170	240 aa	Known RBP	9.95	□□□□□ -0.82
CSL4	YNL232W	MYO4	P32492	1471 aa		9.95	□□□□□ -0.82
CSL4	YNL232W	VHR2	P40041	505 aa		9.94	□□□□□ -0.82
CSL4	YNL232W	SNQ2	P32568	1501 aa	Known RBP	9.92	□□□□□ -0.82
CSL4	YNL232W	DPS1	P04802	557 aa	Known RBP	9.91	□□□□□ -0.82
CSL4	YNL232W	CDC73	Q06697	393 aa		9.91	□□□□□ -0.82
CSL4	YNL232W	MET10	P39692	1035 aa		9.89	□□□□□ -0.83
CSL4	YNL232W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	9.88	□□□□□ -0.83	not detected
CSL4	YNL232W	ISU2	Q12056	156 aa		9.87	□□□□□ -0.83
CSL4	YNL232W	YPR015C	Q12531	247 aa		9.86	□□□□□ -0.83
CSL4	YNL232W	RAD54	P32863	898 aa		9.84	□□□□□ -0.83
CSL4	YNL232W	PDR12	Q02785	1511 aa		9.83	□□□□□ -0.84
CSL4	YNL232W	RAM1	P22007	431 aa		9.83	□□□□□ -0.84
CSL4	YNL232W	TRM3	Q07527	1436 aa		9.82	□□□□□ -0.84
CSL4	YNL232W	PDR10	P51533	1564 aa		9.81	□□□□□ -0.84
CSL4	YNL232W	IQG1	Q12280	1495 aa		9.79	□□□□□ -0.84
CSL4	YNL232W	IFH1	P39520	1085 aa		9.79	□□□□□ -0.84
CSL4	YNL232W	YDR090C	Q03193	310 aa		9.79	□□□□□ -0.84
CSL4	YNL232W	GDB1	Q06625	1536 aa		9.77	□□□□□ -0.84
CSL4	YNL232W	PDR1	P12383	1068 aa		9.76	□□□□□ -0.85
CSL4	YNL232W	DNF3	Q12674	1656 aa		9.76	□□□□□ -0.85
CSL4	YNL232W	YPR148C	Q06523	435 aa		9.75	□□□□□ -0.85
CSL4	YNL232W	PDR15	Q04182	1529 aa	Known RBP	9.75	□□□□□ -0.85
CSL4	YNL232W	MLP2	P40457	1679 aa		9.74	□□□□□ -0.85
CSL4	YNL232W	STH1	P32597	1359 aa		9.74	□□□□□ -0.85
CSL4	YNL232W	CHC1	P22137	1653 aa	Known RBP	9.73	□□□□□ -0.85
CSL4	YNL232W	ARO1	P08566	1588 aa	Known RBP	9.72	□□□□□ -0.85
CSL4	YNL232W	RTT106	P40161	455 aa		9.72	□□□□□ -0.85
CSL4	YNL232W	BUD3	P25558	1636 aa		9.71	□□□□□ -0.85
CSL4	YNL232W	NUP157	P40064	1391 aa	Known RBP	9.7	□□□□□ -0.86
CSL4	YNL232W	RPP1B	P10622	106 aa	Known RBP	9.69	□□□□□ -0.86
CSL4	YNL232W	KIC1	P38692	1080 aa		9.69	□□□□□ -0.86
CSL4	YNL232W	YTA7	P40340	1379 aa		9.69	□□□□□ -0.86
CSL4	YNL232W	REF2	P42073	533 aa	Predicted RBP	9.69	□□□□□ -0.86
CSL4	YNL232W	SRC1	Q03707	834 aa		9.69	□□□□□ -0.86
CSL4	YNL232W	GYP1	Q08484	637 aa		9.67	□□□□□ -0.86
CSL4	YNL232W	RAS1	P01119	309 aa		9.66	□□□□□ -0.86
CSL4	YNL232W	VPS70	P47161	811 aa		9.65	□□□□□ -0.86
CSL4	YNL232W	GAP1	P19145	602 aa	Predicted RBP	9.63	□□□□□ -0.87
CSL4	YNL232W	USO1	P25386	1790 aa		9.63	□□□□□ -0.87
CSL4	YNL232W	YRR1	Q12172	810 aa		9.62	□□□□□ -0.87
CSL4	YNL232W	SEC7	P11075	2009 aa	Known RBP	9.61	□□□□□ -0.87
CSL4	YNL232W	PEX21	P50091	288 aa		9.6	□□□□□ -0.87
CSL4	YNL232W	SDH2	P21801	266 aa		9.59	□□□□□ -0.87
CSL4	YNL232W	CSC1	Q06538	782 aa		9.58	□□□□□ -0.88
CSL4	YNL232W	SAS4	Q04003	481 aa		9.57	□□□□□ -0.88
CSL4	YNL232W	TFB4	Q12004	338 aa		9.57	□□□□□ -0.88

Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms