RNA–Protein interactions for RNA: YLR220W

CCC1, Transcript of Vacuolar Fe2+/Mn2+ transporter, yeast

Gene CCC1, Length 969 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CCC1	YLR220W	PTP3	P40048	928 aa		21.05	■□□□□ 0.96
CCC1	YLR220W	CHZ1	P40019	153 aa	Predicted RBP	21.02	■□□□□ 0.96
CCC1	YLR220W	MHP1	P43638	1398 aa		20.95	■□□□□ 0.94
CCC1	YLR220W	ADE6	P38972	1358 aa	Known RBP	20.9	■□□□□ 0.94
CCC1	YLR220W	YML133C	Q03099	1374 aa		20.87	■□□□□ 0.93
CCC1	YLR220W	YLL067C	Q07888	1374 aa		20.87	■□□□□ 0.93
CCC1	YLR220W	YLL066C	Q99208	1374 aa		20.87	■□□□□ 0.93
CCC1	YLR220W	FKH1	P40466	484 aa		20.86	■□□□□ 0.93
CCC1	YLR220W	YAH1	Q12184	172 aa	Known RBP	20.86	■□□□□ 0.93
CCC1	YLR220W	LEU2	P04173	364 aa	Predicted RBP	20.83	■□□□□ 0.93
CCC1	YLR220W	PRP43	P53131	767 aa	Known RBP	20.82	■□□□□ 0.92
CCC1	YLR220W	MTR4	P47047	1073 aa	Known RBP	20.8	■□□□□ 0.92
CCC1	YLR220W	PDS5	Q04264	1277 aa		20.79	■□□□□ 0.92
CCC1	YLR220W	MLP1	Q02455	1875 aa	Known RBP	20.76	■□□□□ 0.91
CCC1	YLR220W	TY4B-H	P0C2J7	1802 aa		20.74	■□□□□ 0.91
CCC1	YLR220W	TY4B-J	P47024	1803 aa		20.74	■□□□□ 0.91
CCC1	YLR220W	RTG3	P38165	486 aa		20.73	■□□□□ 0.91
CCC1	YLR220W	RRP5	Q05022	1729 aa	Known RBP	20.72	■□□□□ 0.91
CCC1	YLR220W	REB1	P21538	810 aa		20.69	■□□□□ 0.9
CCC1	YLR220W	APP1	P53933	587 aa		20.69	■□□□□ 0.9
CCC1	YLR220W	PRP45	P28004	379 aa	Predicted RBP	20.68	■□□□□ 0.9
CCC1	YLR220W	PRP5	P21372	849 aa	Predicted RBP	20.67	■□□□□ 0.9
CCC1	YLR220W	ENT1	Q12518	454 aa		20.66	■□□□□ 0.9
CCC1	YLR220W	CSE4	P36012	229 aa		20.64	■□□□□ 0.89
CCC1	YLR220W	RPS24A	P0CX31	135 aa	Known RBP	20.63	■□□□□ 0.89
CCC1	YLR220W	RPS24B	P0CX32	135 aa	Known RBP	20.63	■□□□□ 0.89
CCC1	YLR220W	ENV9	Q08651	330 aa		20.58	■□□□□ 0.89
CCC1	YLR220W	SEC3	P33332	1336 aa	Known RBP	20.57	■□□□□ 0.88
CCC1	YLR220W	TAP42	Q04372	366 aa		20.57	■□□□□ 0.88
CCC1	YLR220W	PDI1	P17967	522 aa	Known RBP	20.56	■□□□□ 0.88
CCC1	YLR220W	YRF1-2	P40105	1681 aa		20.54	■□□□□ 0.88
CCC1	YLR220W	MSB3	P48566	633 aa	Predicted RBP	20.54	■□□□□ 0.88
CCC1	YLR220W	RTF1	P53064	558 aa		20.51	■□□□□ 0.87
CCC1	YLR220W	SLM3	Q12093	417 aa		20.51	■□□□□ 0.87
CCC1	YLR220W	PSD2	P53037	1138 aa	Known RBP	20.49	■□□□□ 0.87
CCC1	YLR220W	AUS1	Q08409	1394 aa		20.48	■□□□□ 0.87
CCC1	YLR220W	GRX4	P32642	244 aa		20.48	■□□□□ 0.87
CCC1	YLR220W	NST1	P53935	1240 aa		20.48	■□□□□ 0.87
CCC1	YLR220W	YIL055C	P40523	627 aa	Known RBP	20.47	■□□□□ 0.87
CCC1	YLR220W	YEF3	P16521	1044 aa	Known RBP	20.46	■□□□□ 0.87
CCC1	YLR220W	TCB1	Q12466	1186 aa		20.43	■□□□□ 0.86
CCC1	YLR220W	YIL177C	P40434	1758 aa		20.43	■□□□□ 0.86
CCC1	YLR220W	YJL225C	P40889	1758 aa		20.43	■□□□□ 0.86
CCC1	YLR220W	IMH1	Q06704	911 aa	Known RBP	20.42	■□□□□ 0.86
CCC1	YLR220W	SPT7	P35177	1332 aa		20.42	■□□□□ 0.86
CCC1	YLR220W	GAS4	Q08271	471 aa		20.41	■□□□□ 0.86
CCC1	YLR220W	DPS1	P04802	557 aa	Known RBP	20.4	■□□□□ 0.86
CCC1	YLR220W	HIM1	Q06674	414 aa		20.4	■□□□□ 0.86
CCC1	YLR220W	RSF2	P46974	1380 aa		20.39	■□□□□ 0.85
CCC1	YLR220W	TRK1	P12685	1235 aa		20.34	■□□□□ 0.85
CCC1	YLR220W	KAR2	P16474	682 aa	Known RBP	20.32	■□□□□ 0.84
CCC1	YLR220W	IES2	P40154	320 aa		20.32	■□□□□ 0.84
CCC1	YLR220W	IOC4	Q04213	475 aa		20.31	■□□□□ 0.84
CCC1	YLR220W	URB1	P34241	1764 aa	Known RBP	20.3	■□□□□ 0.84
CCC1	YLR220W	XKS1	P42826	600 aa		20.29	■□□□□ 0.84
CCC1	YLR220W	FKS3	Q04952	1785 aa		20.28	■□□□□ 0.84
CCC1	YLR220W	APC1	P53886	1748 aa		20.27	■□□□□ 0.84
CCC1	YLR220W	RPO41	P13433	1351 aa	Known RBP	20.27	■□□□□ 0.84
CCC1	YLR220W	GLN1	P32288	370 aa	Known RBP	20.27	■□□□□ 0.84
CCC1	YLR220W	YRF1-3	P0CX14	1859 aa		20.26	■□□□□ 0.83
CCC1	YLR220W	YRF1-7	P0CX15	1859 aa		20.26	■□□□□ 0.83
CCC1	YLR220W	YRF1-6	P53819	1859 aa		20.26	■□□□□ 0.83
CCC1	YLR220W	LEU3	P08638	886 aa		20.22	■□□□□ 0.83
CCC1	YLR220W	YMR074C	Q04773	145 aa		20.2	■□□□□ 0.82
CCC1	YLR220W	ROM2	P51862	1356 aa	Known RBP	20.2	■□□□□ 0.82
CCC1	YLR220W	SIR4	P11978	1358 aa		20.19	■□□□□ 0.82
CCC1	YLR220W	ENP1	P38333	483 aa	Known RBP	20.18	■□□□□ 0.82
CCC1	YLR220W	RCR1	P38212	213 aa		20.17	■□□□□ 0.82
CCC1	YLR220W	RRP46	P53256	223 aa	Predicted RBP	20.17	■□□□□ 0.82
CCC1	YLR220W	DOT5	P40553	215 aa		20.16	■□□□□ 0.82
CCC1	YLR220W	PAP2	P53632	584 aa	Known RBP	20.14	■□□□□ 0.81
CCC1	YLR220W	YKL133C	P36066	463 aa		20.13	■□□□□ 0.81
CCC1	YLR220W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	20.12	■□□□□ 0.81	not detected
CCC1	YLR220W	DSD1	P53095	428 aa		20.1	■□□□□ 0.81
CCC1	YLR220W	FOX2	Q02207	900 aa	Known RBP	20.09	■□□□□ 0.81
CCC1	YLR220W	AKL1	P38080	1108 aa	Known RBP	20.08	■□□□□ 0.81
CCC1	YLR220W	YRF1-4	O13559	1382 aa		20.08	■□□□□ 0.8
CCC1	YLR220W	MEC3	Q02574	474 aa		20.07	■□□□□ 0.8
CCC1	YLR220W	CTF4	Q01454	927 aa		20.05	■□□□□ 0.8
CCC1	YLR220W	SNF2	P22082	1703 aa		20.04	■□□□□ 0.8
CCC1	YLR220W	ADE16	P54113	591 aa	Known RBP	20.02	■□□□□ 0.8
CCC1	YLR220W	INP54	Q08227	384 aa	Known RBP	20	■□□□□ 0.79
CCC1	YLR220W	EDE1	P34216	1381 aa		19.99	■□□□□ 0.79
CCC1	YLR220W	RTR1	P40084	226 aa	Predicted RBP	19.99	■□□□□ 0.79
CCC1	YLR220W	COB	P00163	385 aa		19.98	■□□□□ 0.79
CCC1	YLR220W	HSP104	P31539	908 aa	Known RBP	19.98	■□□□□ 0.79
CCC1	YLR220W	RPN11	P43588	306 aa	Known RBP	19.98	■□□□□ 0.79
CCC1	YLR220W	PRD1	P25375	712 aa		19.97	■□□□□ 0.79
CCC1	YLR220W	YKR075C	P36155	307 aa		19.96	■□□□□ 0.79
CCC1	YLR220W	FRK1	Q03002	865 aa	Predicted RBP	19.96	■□□□□ 0.79
CCC1	YLR220W	NTH2	P35172	780 aa		19.95	■□□□□ 0.78
CCC1	YLR220W	BUD31	P25337	157 aa	Predicted RBP	19.94	■□□□□ 0.78
CCC1	YLR220W	OSM1	P21375	501 aa	Known RBP	19.92	■□□□□ 0.78
CCC1	YLR220W	AOS1	Q06624	347 aa		19.91	■□□□□ 0.78
CCC1	YLR220W	NUP145	P49687	1317 aa		19.91	■□□□□ 0.78
CCC1	YLR220W	RPP0	P05317	312 aa	Known RBP	19.9	■□□□□ 0.78
CCC1	YLR220W	YDL144C	Q07589	356 aa		19.9	■□□□□ 0.78
CCC1	YLR220W	LAM6	Q08001	693 aa		19.9	■□□□□ 0.78
CCC1	YLR220W	NPR2	P39923	615 aa		19.89	■□□□□ 0.77
CCC1	YLR220W	MPP10	P47083	593 aa	Known RBP	19.89	■□□□□ 0.77

Retrieved 100 of 5,963 RNA–protein pairs in 14 ms