RNA–Protein interactions for RNA: YKR043C

SHB17, Transcript of Sedoheptulose bisphosphatase involved in riboneogenesis, yeast

Gene SHB17, Length 816 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHB17	YKR043C	PSK1	P31374	1356 aa		14.06	□□□□□ -0.16
SHB17	YKR043C	RRP5	Q05022	1729 aa	Known RBP	14.05	□□□□□ -0.16
SHB17	YKR043C	ENT1	Q12518	454 aa		14.02	□□□□□ -0.17
SHB17	YKR043C	TY4B-H	P0C2J7	1802 aa		14.01	□□□□□ -0.17
SHB17	YKR043C	TY4B-J	P47024	1803 aa		14.01	□□□□□ -0.17
SHB17	YKR043C	YIL055C	P40523	627 aa	Known RBP	14	□□□□□ -0.17
SHB17	YKR043C	ORC1	P54784	914 aa	Predicted RBP	14	□□□□□ -0.17
SHB17	YKR043C	ADE6	P38972	1358 aa	Known RBP	13.99	□□□□□ -0.17
SHB17	YKR043C	YRF1-2	P40105	1681 aa		13.98	□□□□□ -0.17
SHB17	YKR043C	ENV9	Q08651	330 aa		13.97	□□□□□ -0.17
SHB17	YKR043C	PRP45	P28004	379 aa	Predicted RBP	13.96	□□□□□ -0.17
SHB17	YKR043C	GLN1	P32288	370 aa	Known RBP	13.93	□□□□□ -0.18
SHB17	YKR043C	CHZ1	P40019	153 aa	Predicted RBP	13.93	□□□□□ -0.18
SHB17	YKR043C	PRP5	P21372	849 aa	Predicted RBP	13.9	□□□□□ -0.18
SHB17	YKR043C	IMH1	Q06704	911 aa	Known RBP	13.89	□□□□□ -0.19
SHB17	YKR043C	YML133C	Q03099	1374 aa		13.88	□□□□□ -0.19
SHB17	YKR043C	YLL067C	Q07888	1374 aa		13.88	□□□□□ -0.19
SHB17	YKR043C	YLL066C	Q99208	1374 aa		13.88	□□□□□ -0.19
SHB17	YKR043C	LEU2	P04173	364 aa	Predicted RBP	13.86	□□□□□ -0.19
SHB17	YKR043C	SCT1	P32784	759 aa		13.86	□□□□□ -0.19
SHB17	YKR043C	MTR4	P47047	1073 aa	Known RBP	13.86	□□□□□ -0.19
SHB17	YKR043C	PRP43	P53131	767 aa	Known RBP	13.85	□□□□□ -0.19
SHB17	YKR043C	MSB3	P48566	633 aa	Predicted RBP	13.84	□□□□□ -0.19
SHB17	YKR043C	CSE4	P36012	229 aa		13.82	□□□□□ -0.2
SHB17	YKR043C	YMR074C	Q04773	145 aa		13.81	□□□□□ -0.2
SHB17	YKR043C	RPS24A	P0CX31	135 aa	Known RBP	13.8	□□□□□ -0.2
SHB17	YKR043C	RPS24B	P0CX32	135 aa	Known RBP	13.8	□□□□□ -0.2
SHB17	YKR043C	FKH1	P40466	484 aa		13.77	□□□□□ -0.21
SHB17	YKR043C	POL5	P39985	1022 aa	Known RBP	13.76	□□□□□ -0.21
SHB17	YKR043C	SLM3	Q12093	417 aa		13.76	□□□□□ -0.21
SHB17	YKR043C	TCB1	Q12466	1186 aa		13.75	□□□□□ -0.21
SHB17	YKR043C	URB1	P34241	1764 aa	Known RBP	13.75	□□□□□ -0.21
SHB17	YKR043C	YIL177C	P40434	1758 aa		13.75	□□□□□ -0.21
SHB17	YKR043C	YJL225C	P40889	1758 aa		13.75	□□□□□ -0.21
SHB17	YKR043C	RSF2	P46974	1380 aa		13.74	□□□□□ -0.21
SHB17	YKR043C	MHP1	P43638	1398 aa		13.73	□□□□□ -0.21
SHB17	YKR043C	RTG3	P38165	486 aa		13.72	□□□□□ -0.21
SHB17	YKR043C	IES2	P40154	320 aa		13.72	□□□□□ -0.21
SHB17	YKR043C	MLP1	Q02455	1875 aa	Known RBP	13.72	□□□□□ -0.21
SHB17	YKR043C	FKS3	Q04952	1785 aa		13.68	□□□□□ -0.22
SHB17	YKR043C	LEU3	P08638	886 aa		13.67	□□□□□ -0.22
SHB17	YKR043C	PDI1	P17967	522 aa	Known RBP	13.67	□□□□□ -0.22
SHB17	YKR043C	APC1	P53886	1748 aa		13.67	□□□□□ -0.22
SHB17	YKR043C	ROM2	P51862	1356 aa	Known RBP	13.66	□□□□□ -0.22
SHB17	YKR043C	BUD31	P25337	157 aa	Predicted RBP	13.65	□□□□□ -0.22
SHB17	YKR043C	DOT5	P40553	215 aa		13.65	□□□□□ -0.22
SHB17	YKR043C	PDS5	Q04264	1277 aa		13.65	□□□□□ -0.22
SHB17	YKR043C	DPS1	P04802	557 aa	Known RBP	13.64	□□□□□ -0.23
SHB17	YKR043C	XKS1	P42826	600 aa		13.64	□□□□□ -0.23
SHB17	YKR043C	RTF1	P53064	558 aa		13.63	□□□□□ -0.23
SHB17	YKR043C	GAS4	Q08271	471 aa		13.63	□□□□□ -0.23
SHB17	YKR043C	YRF1-3	P0CX14	1859 aa		13.63	□□□□□ -0.23
SHB17	YKR043C	YRF1-7	P0CX15	1859 aa		13.63	□□□□□ -0.23
SHB17	YKR043C	YRF1-6	P53819	1859 aa		13.63	□□□□□ -0.23
SHB17	YKR043C	AUS1	Q08409	1394 aa		13.62	□□□□□ -0.23
SHB17	YKR043C	PRI1	P10363	409 aa		13.62	□□□□□ -0.23
SHB17	YKR043C	FOX2	Q02207	900 aa	Known RBP	13.61	□□□□□ -0.23
SHB17	YKR043C	TAP42	Q04372	366 aa		13.61	□□□□□ -0.23
SHB17	YKR043C	ENP1	P38333	483 aa	Known RBP	13.59	□□□□□ -0.23
SHB17	YKR043C	GRX4	P32642	244 aa		13.58	□□□□□ -0.24
SHB17	YKR043C	RPN11	P43588	306 aa	Known RBP	13.58	□□□□□ -0.24
SHB17	YKR043C	YKL133C	P36066	463 aa		13.57	□□□□□ -0.24
SHB17	YKR043C	SEC3	P33332	1336 aa	Known RBP	13.56	□□□□□ -0.24
SHB17	YKR043C	UBP1	P25037	809 aa		13.55	□□□□□ -0.24
SHB17	YKR043C	HIM1	Q06674	414 aa		13.55	□□□□□ -0.24
SHB17	YKR043C	EDE1	P34216	1381 aa		13.55	□□□□□ -0.24
SHB17	YKR043C	YEF3	P16521	1044 aa	Known RBP	13.54	□□□□□ -0.24
SHB17	YKR043C	SIR4	P11978	1358 aa		13.54	□□□□□ -0.24
SHB17	YKR043C	RCR1	P38212	213 aa		13.51	□□□□□ -0.25
SHB17	YKR043C	SNF2	P22082	1703 aa		13.5	□□□□□ -0.25
SHB17	YKR043C	YRF1-4	O13559	1382 aa		13.5	□□□□□ -0.25
SHB17	YKR043C	COB	P00163	385 aa		13.5	□□□□□ -0.25
SHB17	YKR043C	NPR2	P39923	615 aa		13.49	□□□□□ -0.25
SHB17	YKR043C	YKR075C	P36155	307 aa		13.48	□□□□□ -0.25
SHB17	YKR043C	NST1	P53935	1240 aa		13.48	□□□□□ -0.25
SHB17	YKR043C	KAR2	P16474	682 aa	Known RBP	13.47	□□□□□ -0.25
SHB17	YKR043C	MEC3	Q02574	474 aa		13.47	□□□□□ -0.25
SHB17	YKR043C	LAM6	Q08001	693 aa		13.47	□□□□□ -0.25
SHB17	YKR043C	YJL181W	P46987	611 aa		13.46	□□□□□ -0.25
SHB17	YKR043C	RPO41	P13433	1351 aa	Known RBP	13.45	□□□□□ -0.26
SHB17	YKR043C	PRP40	P33203	583 aa	Known RBP	13.45	□□□□□ -0.26
SHB17	YKR043C	ADE16	P54113	591 aa	Known RBP	13.45	□□□□□ -0.26
SHB17	YKR043C	FRK1	Q03002	865 aa	Predicted RBP	13.45	□□□□□ -0.26
SHB17	YKR043C	TRK1	P12685	1235 aa		13.43	□□□□□ -0.26
SHB17	YKR043C	LYS4	P49367	693 aa	Predicted RBP	13.42	□□□□□ -0.26
SHB17	YKR043C	YBL086C	P38177	466 aa		13.41	□□□□□ -0.26
SHB17	YKR043C	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	13.39	□□□□□ -0.27	not detected
SHB17	YKR043C	PSD2	P53037	1138 aa	Known RBP	13.39	□□□□□ -0.27
SHB17	YKR043C	GTT3	P39996	337 aa		13.37	□□□□□ -0.27
SHB17	YKR043C	INP54	Q08227	384 aa	Known RBP	13.37	□□□□□ -0.27
SHB17	YKR043C	PAP2	P53632	584 aa	Known RBP	13.36	□□□□□ -0.27
SHB17	YKR043C	CTH1	P47976	325 aa		13.35	□□□□□ -0.27
SHB17	YKR043C	DSD1	P53095	428 aa		13.35	□□□□□ -0.27
SHB17	YKR043C	ATG13	Q06628	738 aa		13.35	□□□□□ -0.27
SHB17	YKR043C	RIM15	P43565	1770 aa		13.33	□□□□□ -0.28
SHB17	YKR043C	UGA2	P38067	497 aa		13.33	□□□□□ -0.28
SHB17	YKR043C	ALD2	P47771	506 aa		13.33	□□□□□ -0.28
SHB17	YKR043C	HSP104	P31539	908 aa	Known RBP	13.32	□□□□□ -0.28
SHB17	YKR043C	AKL1	P38080	1108 aa	Known RBP	13.32	□□□□□ -0.28
SHB17	YKR043C	SSA2	P10592	639 aa	Known RBP	13.31	□□□□□ -0.28

Retrieved 100 of 5,963 RNA–protein pairs in 14.7 ms