RNA–Protein interactions for RNA: YDR069C

DOA4, Transcript of Ubiquitin hydrolase, yeast

Gene DOA4, Length 2,781 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DOA4	YDR069C	HPC2	Q01448	625 aa		4.29	□□□□□ -1.72
DOA4	YDR069C	MMP1	Q12372	583 aa		4.29	□□□□□ -1.72
DOA4	YDR069C	PDR1	P12383	1068 aa		4.28	□□□□□ -1.72
DOA4	YDR069C	PTC2	P39966	464 aa	Known RBP	4.28	□□□□□ -1.72
DOA4	YDR069C	BNI4	P53858	892 aa		4.28	□□□□□ -1.72
DOA4	YDR069C	PRE3	P38624	215 aa		4.28	□□□□□ -1.72
DOA4	YDR069C	HST2	P53686	357 aa		4.28	□□□□□ -1.72
DOA4	YDR069C	CHL1	P22516	861 aa	Predicted RBP	4.27	□□□□□ -1.73
DOA4	YDR069C	YDR344C	Q05510	147 aa		4.27	□□□□□ -1.73
DOA4	YDR069C	SCJ1	P25303	377 aa		4.27	□□□□□ -1.73
DOA4	YDR069C	TFB3	Q03290	321 aa		4.27	□□□□□ -1.73
DOA4	YDR069C	SIT4	P20604	311 aa		4.26	□□□□□ -1.73
DOA4	YDR069C	SLY41	P22215	453 aa		4.26	□□□□□ -1.73
DOA4	YDR069C	GCD11	P32481	527 aa	Known RBP	4.26	□□□□□ -1.73
DOA4	YDR069C	PKH3	Q03306	898 aa	Predicted RBP	4.26	□□□□□ -1.73
DOA4	YDR069C	ESS1	P22696	170 aa		4.26	□□□□□ -1.73
DOA4	YDR069C	YNL115C	P53925	644 aa		4.26	□□□□□ -1.73
DOA4	YDR069C	KEX2	P13134	814 aa		4.25	□□□□□ -1.73
DOA4	YDR069C	KTR1	P27810	393 aa	Known RBP	4.25	□□□□□ -1.73
DOA4	YDR069C	RTF1	P53064	558 aa		4.25	□□□□□ -1.73
DOA4	YDR069C	ISM1	P48526	1002 aa		4.25	□□□□□ -1.73
DOA4	YDR069C	ARG8	P18544	423 aa		4.24	□□□□□ -1.73
DOA4	YDR069C	RPS0B	P46654	252 aa	Known RBP	4.24	□□□□□ -1.73
DOA4	YDR069C	YRB30	P53107	440 aa	Predicted RBP	4.24	□□□□□ -1.73
DOA4	YDR069C	STR2	P47164	639 aa		4.23	□□□□□ -1.73
DOA4	YDR069C	YJU3	P28321	313 aa		4.22	□□□□□ -1.73
DOA4	YDR069C	YBL036C	P38197	257 aa		4.22	□□□□□ -1.73
DOA4	YDR069C	ERF2	Q06551	359 aa		4.22	□□□□□ -1.73
DOA4	YDR069C	PKC1	P24583	1151 aa		4.22	□□□□□ -1.73
DOA4	YDR069C	TBF1	Q02457	562 aa		4.22	□□□□□ -1.73
DOA4	YDR069C	YML082W	Q04533	649 aa	Known RBP	4.22	□□□□□ -1.73
DOA4	YDR069C	RAD59	Q12223	238 aa		4.22	□□□□□ -1.73
DOA4	YDR069C	BUD20	Q08004	166 aa	Predicted RBP	4.21	□□□□□ -1.73
DOA4	YDR069C	PRT1	P06103	763 aa	Known RBP	4.21	□□□□□ -1.74
DOA4	YDR069C	PAT1	P25644	796 aa	Known RBP	4.21	□□□□□ -1.74
DOA4	YDR069C	PUS6	P53294	404 aa		4.21	□□□□□ -1.74
DOA4	YDR069C	LAM6	Q08001	693 aa		4.21	□□□□□ -1.74
DOA4	YDR069C	TCB3	Q03640	1545 aa	Known RBP	4.21	□□□□□ -1.74
DOA4	YDR069C	YJL007C	P47080	104 aa		4.2	□□□□□ -1.74
DOA4	YDR069C	GYP1	Q08484	637 aa		4.2	□□□□□ -1.74
DOA4	YDR069C	RAM1	P22007	431 aa		4.2	□□□□□ -1.74
DOA4	YDR069C	YFR016C	P43597	1233 aa	Known RBP	4.19	□□□□□ -1.74
DOA4	YDR069C	RPL34B	P40525	121 aa	Known RBP	4.19	□□□□□ -1.74
DOA4	YDR069C	RLF2	Q12495	606 aa		4.19	□□□□□ -1.74
DOA4	YDR069C	YPR015C	Q12531	247 aa		4.19	□□□□□ -1.74
DOA4	YDR069C	TRM1	P15565	570 aa	Known RBP	4.19	□□□□□ -1.74
DOA4	YDR069C	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	4.19	□□□□□ -1.74	not detected
DOA4	YDR069C	SPT16	P32558	1035 aa	Known RBP	4.18	□□□□□ -1.74
DOA4	YDR069C	VRP1	P37370	817 aa		4.18	□□□□□ -1.74
DOA4	YDR069C	CSE4	P36012	229 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	RRN7	P40992	514 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	TUB4	P53378	473 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	TY1A-DR4	O74302	440 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	TY1A-H	P0C2I4	478 aa	Known RBP	4.17	□□□□□ -1.74
DOA4	YDR069C	TY1A-A	P0CX57	440 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	TY1A-PR1	P0CX58	440 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	TY1A-OR	P0CX59	440 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	TY1A-PR2	P0CX60	440 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	TY1A-DR5	P0CX65	440 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	TY1A-ER2	P0CX66	440 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	TY1A-GR3	P0CX67	440 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	TY1A-LR1	P0CX68	440 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	TY1A-MR2	P0CX69	440 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	SEC2	P17065	759 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	TY1A-JR2	P47099	440 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	TCB2	P48231	1178 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	TY1A-DR1	Q03856	440 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	SAS4	Q04003	481 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	TY1A-ML1	Q04706	440 aa	Known RBP	4.17	□□□□□ -1.74
DOA4	YDR069C	TY1A-BR	Q12217	440 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	TY1A-NL2	Q12470	440 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	TY1A-GR2	Q12485	440 aa		4.17	□□□□□ -1.74
DOA4	YDR069C	BIM1	P40013	344 aa		4.16	□□□□□ -1.74
DOA4	YDR069C	KXD1	P53158	218 aa		4.15	□□□□□ -1.74
DOA4	YDR069C	YDL206W	Q12424	762 aa		4.15	□□□□□ -1.74
DOA4	YDR069C	RSC30	P38781	883 aa		4.15	□□□□□ -1.75
DOA4	YDR069C	BCK2	P33306	851 aa		4.14	□□□□□ -1.75
DOA4	YDR069C	MRF1	P30775	413 aa	Predicted RBP	4.14	□□□□□ -1.75
DOA4	YDR069C	ALR1	Q08269	859 aa		4.14	□□□□□ -1.75
DOA4	YDR069C	PAC1	P39946	494 aa	Known RBP	4.14	□□□□□ -1.75
DOA4	YDR069C	ATG32	P40458	529 aa		4.14	□□□□□ -1.75
DOA4	YDR069C	RPA14	P50106	137 aa		4.14	□□□□□ -1.75
DOA4	YDR069C	YNL108C	P53929	270 aa		4.14	□□□□□ -1.75
DOA4	YDR069C	AGE1	Q04412	482 aa		4.14	□□□□□ -1.75
DOA4	YDR069C	ERG12	P07277	443 aa		4.13	□□□□□ -1.75
DOA4	YDR069C	MAK16	P10962	306 aa	Predicted RBP	4.13	□□□□□ -1.75
DOA4	YDR069C	SPT5	P27692	1063 aa	Known RBP	4.13	□□□□□ -1.75
DOA4	YDR069C	MNN4	P36044	1178 aa		4.13	□□□□□ -1.75
DOA4	YDR069C	BIO2	P32451	375 aa		4.12	□□□□□ -1.75
DOA4	YDR069C	YPR097W	Q06839	1073 aa		4.12	□□□□□ -1.75
DOA4	YDR069C	TIF1	P10081	395 aa	Known RBP	4.11	□□□□□ -1.75
DOA4	YDR069C	QCR6	P00127	147 aa		4.11	□□□□□ -1.75
DOA4	YDR069C	RTG2	P32608	588 aa	Known RBP	4.1	□□□□□ -1.75
DOA4	YDR069C	YPR204W	Q08995	1032 aa		4.1	□□□□□ -1.75
DOA4	YDR069C	PDC1	P06169	563 aa	Known RBP	4.1	□□□□□ -1.75
DOA4	YDR069C	YDJ1	P25491	409 aa	Known RBP	4.1	□□□□□ -1.75
DOA4	YDR069C	HXT10	P43581	546 aa		4.09	□□□□□ -1.75
DOA4	YDR069C	AIM44	Q99299	758 aa		4.09	□□□□□ -1.75
DOA4	YDR069C	XDJ1	P39102	459 aa		4.09	□□□□□ -1.75
DOA4	YDR069C	NAF1	P53919	492 aa	Known RBP	4.09	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 38.9 ms