RNA–Protein interactions for RNA: YBR263W

SHM1, Transcript of Mitochondrial serine hydroxymethyltransferase, yeastyeast

Gene SHM1, Length 1,473 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHM1YBR263W TRM732Q03496 1420 aa8.9□□□□□ -0.98
SHM1YBR263W NOP53Q12080 455 aaKnown RBP8.89□□□□□ -0.99
SHM1YBR263W MPH3P0CE00 602 aa8.89□□□□□ -0.99
SHM1YBR263W MID1P41821 548 aa8.89□□□□□ -0.99
SHM1YBR263W ELP4Q02884 456 aaKnown RBP8.88□□□□□ -0.99
SHM1YBR263W AI4P03878 556 aa8.87□□□□□ -0.99
SHM1YBR263W VTH1P40438 1549 aa8.87□□□□□ -0.99
SHM1YBR263W VTH2P40890 1549 aa8.87□□□□□ -0.99
SHM1YBR263W ILV3P39522 585 aaKnown RBP8.85□□□□□ -0.99
SHM1YBR263W ARH1P48360 493 aa8.85□□□□□ -0.99
SHM1YBR263W TY1B-JR2P47100 1755 aaKnown RBP8.84□□□□□ -1
SHM1YBR263W TY1B-ER2Q03619 1755 aa8.84□□□□□ -1
SHM1YBR263W TY1B-MR1Q04214 1755 aa8.84□□□□□ -1
SHM1YBR263W TY1B-MR2Q04670 1755 aaKnown RBP8.84□□□□□ -1
SHM1YBR263W TY1B-LR1Q12088 1755 aaKnown RBP8.84□□□□□ -1
SHM1YBR263W TY1B-NL1Q12112 1755 aa8.84□□□□□ -1
SHM1YBR263W TY1B-GR1Q12141 1755 aa8.84□□□□□ -1
SHM1YBR263W TY1B-BLQ12490 1755 aa8.84□□□□□ -1
SHM1YBR263W YGR273CP53329 174 aa8.83□□□□□ -1
SHM1YBR263W VRP1P37370 817 aa8.82□□□□□ -1
SHM1YBR263W NUP159P40477 1460 aa8.81□□□□□ -1
SHM1YBR263W SNQ2P32568 1501 aaKnown RBP8.79□□□□□ -1
SHM1YBR263W SNT2P53127 1403 aa8.78□□□□□ -1
SHM1YBR263W XDJ1P39102 459 aa8.77□□□□□ -1
SHM1YBR263W PEX29Q03370 554 aa8.77□□□□□ -1
SHM1YBR263W NTE1Q04958 1679 aa8.77□□□□□ -1.01
SHM1YBR263W STH1P32597 1359 aa8.77□□□□□ -1.01
SHM1YBR263W SAS10Q12136 610 aaPredicted RBP8.77□□□□□ -1.01
SHM1YBR263W LTE1P07866 1435 aa8.76□□□□□ -1.01
SHM1YBR263W YRF1-1P0CX20 1796 aa8.75□□□□□ -1.01
SHM1YBR263W YRF1-5P0CX21 1796 aa8.75□□□□□ -1.01
SHM1YBR263W YRF1-8P0CX22 1796 aa8.75□□□□□ -1.01
SHM1YBR263W RPO21P04050 1733 aaKnown RBP8.75□□□□□ -1.01
SHM1YBR263W SPT23P35210 1082 aa8.74□□□□□ -1.01
SHM1YBR263W HAP5Q02516 242 aa8.72□□□□□ -1.01
SHM1YBR263W VPS15P22219 1454 aa8.7□□□□□ -1.02
SHM1YBR263W MPC54Q08550 464 aa8.7□□□□□ -1.02
SHM1YBR263W SLI15P38283 698 aa8.69□□□□□ -1.02
SHM1YBR263W ULS1Q08562 1619 aa8.68□□□□□ -1.02
SHM1YBR263W PDR15Q04182 1529 aaKnown RBP8.68□□□□□ -1.02
SHM1YBR263W GEA2P39993 1459 aaKnown RBP8.67□□□□□ -1.02
SHM1YBR263W SET1P38827 1080 aaKnown RBP8.67□□□□□ -1.02
SHM1YBR263W BNI4P53858 892 aa8.67□□□□□ -1.02
SHM1YBR263W TAF7Q05021 590 aa8.67□□□□□ -1.02
SHM1YBR263W RTT106P40161 455 aa8.66□□□□□ -1.02
SHM1YBR263W MLP2P40457 1679 aa8.66□□□□□ -1.02
SHM1YBR263W MET10P39692 1035 aa8.65□□□□□ -1.02
SHM1YBR263W KEX1P09620 729 aa8.64□□□□□ -1.03
SHM1YBR263W NMA111P53920 997 aa8.64□□□□□ -1.03
SHM1YBR263W ITT1Q04638 464 aa8.64□□□□□ -1.03
SHM1YBR263W BNI1P41832 1953 aa8.63□□□□□ -1.03
SHM1YBR263W YML082WQ04533 649 aaKnown RBP8.63□□□□□ -1.03
SHM1YBR263W DPL1Q05567 589 aa8.62□□□□□ -1.03
SHM1YBR263W PDR12Q02785 1511 aa8.61□□□□□ -1.03
SHM1YBR263W PTC2P39966 464 aaKnown RBP8.61□□□□□ -1.03
SHM1YBR263W IFH1P39520 1085 aa8.6□□□□□ -1.03
SHM1YBR263W IRC20Q06554 1556 aa8.6□□□□□ -1.03
SHM1YBR263W SPO14P36126 1683 aa8.6□□□□□ -1.03
SHM1YBR263W DRS2P39524 1355 aa8.58□□□□□ -1.04
SHM1YBR263W DPS1P04802 557 aaKnown RBP8.58□□□□□ -1.04
SHM1YBR263W GEA1P47102 1408 aaPredicted RBP8.58□□□□□ -1.04
SHM1YBR263W UBP14P38237 781 aaKnown RBP8.57□□□□□ -1.04
SHM1YBR263W GDB1Q06625 1536 aa8.56□□□□□ -1.04
SHM1YBR263W YLR326WQ06170 240 aaKnown RBP8.56□□□□□ -1.04
SHM1YBR263W NUP157P40064 1391 aaKnown RBP8.55□□□□□ -1.04
SHM1YBR263W NUP170P38181 1502 aa8.54□□□□□ -1.04
SHM1YBR263W VHR2P40041 505 aa8.53□□□□□ -1.04
SHM1YBR263W CDC73Q06697 393 aa8.53□□□□□ -1.04
SHM1YBR263W TY3B-GQ99315 1547 aa8.53□□□□□ -1.04
SHM1YBR263W PDR10P51533 1564 aa8.52□□□□□ -1.05
SHM1YBR263W ISU2Q12056 156 aa8.52□□□□□ -1.05
SHM1YBR263W IQG1Q12280 1495 aa8.51□□□□□ -1.05
SHM1YBR263W MMS1Q06211 1407 aa8.51□□□□□ -1.05
SHM1YBR263W PCS60P38137 543 aaKnown RBP RIP-Chip data8.51□□□□□ -1.05not detected
SHM1YBR263W CAT8P39113 1433 aa8.5□□□□□ -1.05
SHM1YBR263W YPR015CQ12531 247 aa8.5□□□□□ -1.05
SHM1YBR263W RAM1P22007 431 aa8.49□□□□□ -1.05
SHM1YBR263W RAD54P32863 898 aa8.46□□□□□ -1.05
SHM1YBR263W YBT1P32386 1661 aa8.46□□□□□ -1.06
SHM1YBR263W BUD3P25558 1636 aa8.44□□□□□ -1.06
SHM1YBR263W TRM3Q07527 1436 aa8.42□□□□□ -1.06
SHM1YBR263W YDR090CQ03193 310 aa8.42□□□□□ -1.06
SHM1YBR263W ARO1P08566 1588 aaKnown RBP8.41□□□□□ -1.06
SHM1YBR263W PDR1P12383 1068 aa8.41□□□□□ -1.06
SHM1YBR263W YSP2Q06681 1438 aa8.41□□□□□ -1.06
SHM1YBR263W DOP1Q03921 1698 aa8.4□□□□□ -1.06
SHM1YBR263W CKB1P43639 278 aa8.4□□□□□ -1.06
SHM1YBR263W SRC1Q03707 834 aa8.4□□□□□ -1.06
SHM1YBR263W YPR148CQ06523 435 aa8.38□□□□□ -1.07
SHM1YBR263W RPP1BP10622 106 aaKnown RBP8.37□□□□□ -1.07
SHM1YBR263W DNF2Q12675 1612 aa8.36□□□□□ -1.07
SHM1YBR263W IKI3Q06706 1349 aaKnown RBP8.36□□□□□ -1.07
SHM1YBR263W RAS1P01119 309 aa8.36□□□□□ -1.07
SHM1YBR263W GYP1Q08484 637 aa8.35□□□□□ -1.07
SHM1YBR263W SRB8P25648 1427 aa8.34□□□□□ -1.07
SHM1YBR263W KIC1P38692 1080 aa8.33□□□□□ -1.08
SHM1YBR263W REF2P42073 533 aaPredicted RBP8.33□□□□□ -1.08
SHM1YBR263W SEC7P11075 2009 aaKnown RBP8.33□□□□□ -1.08
SHM1YBR263W BNR1P40450 1375 aa8.33□□□□□ -1.08
SHM1YBR263W CHC1P22137 1653 aaKnown RBP8.31□□□□□ -1.08
Retrieved 100 of 5,963 RNA–protein pairs in 23.6 ms