RNA–Protein interactions for RNA: YBR223C

TDP1, Transcript of Tyrosyl-DNA phosphodiesterase I, yeastyeast

Gene TDP1, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TDP1YBR223C MRX12P47084 519 aa8.79□□□□□ -1
TDP1YBR223C YDL144CQ07589 356 aa8.79□□□□□ -1
TDP1YBR223C IOC4Q04213 475 aa8.78□□□□□ -1
TDP1YBR223C RVB2Q12464 471 aaKnown RBP8.78□□□□□ -1
TDP1YBR223C YEF3P16521 1044 aaKnown RBP8.77□□□□□ -1.01
TDP1YBR223C HAP1P0CE41 1502 aa8.76□□□□□ -1.01
TDP1YBR223C KRE5P22023 1365 aa8.75□□□□□ -1.01
TDP1YBR223C FPR3P38911 411 aaKnown RBP8.75□□□□□ -1.01
TDP1YBR223C YRB30P53107 440 aaPredicted RBP8.73□□□□□ -1.01
TDP1YBR223C YML133CQ03099 1374 aa8.73□□□□□ -1.01
TDP1YBR223C YLL067CQ07888 1374 aa8.73□□□□□ -1.01
TDP1YBR223C YLL066CQ99208 1374 aa8.73□□□□□ -1.01
TDP1YBR223C RIA1P53893 1110 aa8.72□□□□□ -1.01
TDP1YBR223C RCM1P53972 490 aa8.72□□□□□ -1.01
TDP1YBR223C SNF2P22082 1703 aa8.72□□□□□ -1.01
TDP1YBR223C MPP10P47083 593 aaKnown RBP8.72□□□□□ -1.01
TDP1YBR223C KAR2P16474 682 aaKnown RBP8.71□□□□□ -1.02
TDP1YBR223C SUI2P20459 304 aaKnown RBP8.71□□□□□ -1.02
TDP1YBR223C PSK1P31374 1356 aa8.7□□□□□ -1.02
TDP1YBR223C RTR1P40084 226 aaPredicted RBP8.7□□□□□ -1.02
TDP1YBR223C DNF3Q12674 1656 aa8.69□□□□□ -1.02
TDP1YBR223C PPH3P32345 308 aa8.69□□□□□ -1.02
TDP1YBR223C RPC31P17890 251 aa8.68□□□□□ -1.02
TDP1YBR223C PDI1P17967 522 aaKnown RBP8.67□□□□□ -1.02
TDP1YBR223C RRP46P53256 223 aaPredicted RBP8.66□□□□□ -1.02
TDP1YBR223C PAP2P53632 584 aaKnown RBP8.66□□□□□ -1.02
TDP1YBR223C LEU2P04173 364 aaPredicted RBP8.65□□□□□ -1.02
TDP1YBR223C TAP42Q04372 366 aa8.65□□□□□ -1.02
TDP1YBR223C SAP155P43612 1002 aa8.65□□□□□ -1.03
TDP1YBR223C RTF1P53064 558 aa8.65□□□□□ -1.03
TDP1YBR223C NAB6Q03735 1134 aaKnown RBP RIP-Chip data8.65□□□□□ -1.03not detected
TDP1YBR223C MAK10Q02197 733 aa8.64□□□□□ -1.03
TDP1YBR223C CPS1P27614 576 aa8.63□□□□□ -1.03
TDP1YBR223C MTR4P47047 1073 aaKnown RBP8.63□□□□□ -1.03
TDP1YBR223C HIM1Q06674 414 aa8.63□□□□□ -1.03
TDP1YBR223C RAD2P07276 1031 aa8.62□□□□□ -1.03
TDP1YBR223C PRD1P25375 712 aa8.62□□□□□ -1.03
TDP1YBR223C TPD3P31383 635 aa8.62□□□□□ -1.03
TDP1YBR223C GRX4P32642 244 aa8.62□□□□□ -1.03
TDP1YBR223C YNR029CP53729 429 aaKnown RBP8.61□□□□□ -1.03
TDP1YBR223C THI22Q06490 572 aa8.6□□□□□ -1.03
TDP1YBR223C AUS1Q08409 1394 aa8.59□□□□□ -1.04
TDP1YBR223C BUD27P43573 796 aaKnown RBP RIP-Chip data8.58□□□□□ -1.04not detected
TDP1YBR223C USO1P25386 1790 aa8.58□□□□□ -1.04
TDP1YBR223C DAL5P15365 543 aa8.58□□□□□ -1.04
TDP1YBR223C CSE4P36012 229 aa8.57□□□□□ -1.04
TDP1YBR223C RPS24AP0CX31 135 aaKnown RBP8.56□□□□□ -1.04
TDP1YBR223C RPS24BP0CX32 135 aaKnown RBP8.56□□□□□ -1.04
TDP1YBR223C HEF3P53978 1044 aaKnown RBP8.56□□□□□ -1.04
TDP1YBR223C GAS4Q08271 471 aa8.56□□□□□ -1.04
TDP1YBR223C YIL092WP40497 633 aa8.55□□□□□ -1.04
TDP1YBR223C YFR016CP43597 1233 aaKnown RBP8.55□□□□□ -1.04
TDP1YBR223C MAK21Q12176 1025 aaKnown RBP8.55□□□□□ -1.04
TDP1YBR223C RTT109Q07794 436 aa8.54□□□□□ -1.04
TDP1YBR223C RPO41P13433 1351 aaKnown RBP8.54□□□□□ -1.04
TDP1YBR223C DPS1P04802 557 aaKnown RBP8.54□□□□□ -1.04
TDP1YBR223C ABP1P15891 592 aaKnown RBP8.54□□□□□ -1.04
TDP1YBR223C IME2P32581 645 aa8.53□□□□□ -1.04
TDP1YBR223C SIR4P11978 1358 aa8.53□□□□□ -1.04
TDP1YBR223C OPY1P38271 328 aa8.52□□□□□ -1.05
TDP1YBR223C POL32P47110 350 aa8.52□□□□□ -1.05
TDP1YBR223C TY1B-NL2Q99337 1749 aaKnown RBP8.51□□□□□ -1.05
TDP1YBR223C BUB1P41695 1021 aaKnown RBP RIP-Chip data8.51□□□□□ -1.05not detected
TDP1YBR223C PRP43P53131 767 aaKnown RBP8.51□□□□□ -1.05
TDP1YBR223C ADE6P38972 1358 aaKnown RBP8.51□□□□□ -1.05
TDP1YBR223C EAF7P53911 425 aaKnown RBP8.5□□□□□ -1.05
TDP1YBR223C AKL1P38080 1108 aaKnown RBP8.49□□□□□ -1.05
TDP1YBR223C YIR014WP40570 242 aa8.48□□□□□ -1.05
TDP1YBR223C PUF6Q04373 656 aaKnown RBP8.48□□□□□ -1.05
TDP1YBR223C YRF1-4O13559 1382 aa8.47□□□□□ -1.05
TDP1YBR223C GYP7P48365 746 aa8.45□□□□□ -1.06
TDP1YBR223C ZDS1P50111 915 aaKnown RBP8.45□□□□□ -1.06
TDP1YBR223C DSD1P53095 428 aa8.45□□□□□ -1.06
TDP1YBR223C YNL050CP53952 270 aa8.45□□□□□ -1.06
TDP1YBR223C RRT14P40470 206 aa8.44□□□□□ -1.06
TDP1YBR223C YMR196WQ04336 1088 aa8.44□□□□□ -1.06
TDP1YBR223C APC1P53886 1748 aa8.44□□□□□ -1.06
TDP1YBR223C CLC1P17891 233 aa8.43□□□□□ -1.06
TDP1YBR223C TRP5P00931 707 aaKnown RBP8.43□□□□□ -1.06
TDP1YBR223C MAM1P40065 302 aa8.43□□□□□ -1.06
TDP1YBR223C TY4B-HP0C2J7 1802 aa8.42□□□□□ -1.06
TDP1YBR223C TY4B-JP47024 1803 aa8.42□□□□□ -1.06
TDP1YBR223C HSP104P31539 908 aaKnown RBP8.41□□□□□ -1.06
TDP1YBR223C NTH2P35172 780 aa8.41□□□□□ -1.06
TDP1YBR223C YRF1-2P40105 1681 aa8.41□□□□□ -1.06
TDP1YBR223C YBR287WP38355 427 aa8.4□□□□□ -1.06
TDP1YBR223C SRT1Q03175 343 aa8.4□□□□□ -1.06
TDP1YBR223C ECM16Q04217 1267 aaKnown RBP8.4□□□□□ -1.07
TDP1YBR223C PCT1P13259 424 aa8.39□□□□□ -1.07
TDP1YBR223C THI12P42883 340 aa8.39□□□□□ -1.07
TDP1YBR223C THI5P43534 340 aa8.39□□□□□ -1.07
TDP1YBR223C THI11P47183 340 aa8.39□□□□□ -1.07
TDP1YBR223C THI13Q07748 340 aa8.39□□□□□ -1.07
TDP1YBR223C RRP5Q05022 1729 aaKnown RBP8.39□□□□□ -1.07
TDP1YBR223C EDE1P34216 1381 aa8.38□□□□□ -1.07
TDP1YBR223C AOS1Q06624 347 aa8.38□□□□□ -1.07
TDP1YBR223C YNG2P38806 282 aaKnown RBP8.37□□□□□ -1.07
TDP1YBR223C SNF7P39929 240 aaKnown RBP8.37□□□□□ -1.07
TDP1YBR223C YPP1P46951 817 aa8.37□□□□□ -1.07
TDP1YBR223C BMS1Q08965 1183 aaKnown RBP8.37□□□□□ -1.07
Retrieved 100 of 5,963 RNA–protein pairs in 30.5 ms