RNA–Protein interactions for RNA: ENST00000624009.3

LINC00963-217, long intergenic non-protein coding RNA 963, humanhuman

TSL 5 BASIC

Gene LINC00963, Length 663 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00963-217ENST00000624009 RAPGEF3O95398 923 aa19.94■□□□□ 0.78
LINC00963-217ENST00000624009 ARHGEF40Q8TER5 1519 aa19.92■□□□□ 0.78
LINC00963-217ENST00000624009 CDC42BPAQ5VT25 1732 aa19.91■□□□□ 0.78
LINC00963-217ENST00000624009 POGZQ7Z3K3 1410 aa19.91■□□□□ 0.78
LINC00963-217ENST00000624009 ARHGAP5Q13017 1502 aa19.91■□□□□ 0.78
LINC00963-217ENST00000624009 SCAPERQ9BY12 1400 aa19.9■□□□□ 0.78
LINC00963-217ENST00000624009 LOC105371045A0A1W2PR82 267 aa19.88■□□□□ 0.77
LINC00963-217ENST00000624009 EHBP1L1Q8N3D4 1523 aa19.86■□□□□ 0.77
LINC00963-217ENST00000624009 ZNF518AQ6AHZ1 1483 aa19.86■□□□□ 0.77
LINC00963-217ENST00000624009 VPS8Q8N3P4 1428 aa19.86■□□□□ 0.77
LINC00963-217ENST00000624009 MTUS2Q5JR59 1369 aa19.85■□□□□ 0.77
LINC00963-217ENST00000624009 KDM5CP41229 1560 aa19.85■□□□□ 0.77
LINC00963-217ENST00000624009 ZFYVE16Q7Z3T8 1539 aa19.84■□□□□ 0.77
LINC00963-217ENST00000624009 ABCC1P33527 1531 aa19.83■□□□□ 0.77
LINC00963-217ENST00000624009 GPATCH8Q9UKJ3 1502 aaKnown RBP19.82■□□□□ 0.76
LINC00963-217ENST00000624009 MAP3K1Q13233 1512 aa19.81■□□□□ 0.76
LINC00963-217ENST00000624009 ADAMTSL3P82987 1691 aa19.81■□□□□ 0.76
LINC00963-217ENST00000624009 ITSN2Q9NZM3 1697 aa19.81■□□□□ 0.76
LINC00963-217ENST00000624009 BCORL1Q5H9F3 1711 aa19.8■□□□□ 0.76
LINC00963-217ENST00000624009 TIAM1Q13009 1591 aa19.8■□□□□ 0.76
LINC00963-217ENST00000624009 PLEKHH2Q8IVE3 1493 aa19.79■□□□□ 0.76
LINC00963-217ENST00000624009 SUPT6HQ7KZ85 1726 aaKnown RBP19.78■□□□□ 0.76
LINC00963-217ENST00000624009 CCNB3Q8WWL7 1395 aa19.78■□□□□ 0.76
LINC00963-217ENST00000624009 MLH3Q9UHC1 1453 aa19.78■□□□□ 0.76
LINC00963-217ENST00000624009 HECW2Q9P2P5 1572 aa19.78■□□□□ 0.76
LINC00963-217ENST00000624009 KIAA1107Q9UPP5 1409 aa19.77■□□□□ 0.76
LINC00963-217ENST00000624009 ATP10AO60312 1499 aa19.76■□□□□ 0.75
LINC00963-217ENST00000624009 YEATS2Q9ULM3 1422 aa19.76■□□□□ 0.75
LINC00963-217ENST00000624009 SAMD9LQ8IVG5 1584 aa19.75■□□□□ 0.75
LINC00963-217ENST00000624009 ARHGEF12Q9NZN5 1544 aa19.75■□□□□ 0.75
LINC00963-217ENST00000624009 REREQ9P2R6 1566 aa19.74■□□□□ 0.75
LINC00963-217ENST00000624009 CFDP1Q9UEE9 299 aaPredicted RBP19.73■□□□□ 0.75
LINC00963-217ENST00000624009 C9orf84Q5VXU9 1444 aa19.73■□□□□ 0.75
LINC00963-217ENST00000624009 AFAP1Q8N556 730 aa19.72■□□□□ 0.75
LINC00963-217ENST00000624009 TRAPPC8Q9Y2L5 1435 aa19.71■□□□□ 0.75
LINC00963-217ENST00000624009 LRRC9Q6ZRR7 1453 aa19.71■□□□□ 0.75
LINC00963-217ENST00000624009 NCOA2Q15596 1464 aa19.7■□□□□ 0.74
LINC00963-217ENST00000624009 SIGLEC1Q9BZZ2 1709 aa19.7■□□□□ 0.74
LINC00963-217ENST00000624009 SYCP2Q9BX26 1530 aa19.7■□□□□ 0.74
LINC00963-217ENST00000624009 ARID4BQ4LE39 1312 aaPredicted RBP19.7■□□□□ 0.74
LINC00963-217ENST00000624009 DIP2CQ9Y2E4 1556 aa19.7■□□□□ 0.74
LINC00963-217ENST00000624009 KIDINS220Q9ULH0 1771 aa19.69■□□□□ 0.74
LINC00963-217ENST00000624009 ABCA6Q8N139 1617 aa19.67■□□□□ 0.74
LINC00963-217ENST00000624009 MADDQ8WXG6 1647 aa19.67■□□□□ 0.74
LINC00963-217ENST00000624009 PTPRMP28827 1452 aa19.67■□□□□ 0.74
LINC00963-217ENST00000624009 AGLP35573 1532 aa19.66■□□□□ 0.74
LINC00963-217ENST00000624009 ZNF777Q9ULD5 760 aaPredicted RBP19.64■□□□□ 0.73
LINC00963-217ENST00000624009 FER1L4A9Z1Z3 1794 aa19.63■□□□□ 0.73
LINC00963-217ENST00000624009 INO80Q9ULG1 1556 aaPredicted RBP19.63■□□□□ 0.73
LINC00963-217ENST00000624009 MBD5Q9P267 1494 aa19.61■□□□□ 0.73
LINC00963-217ENST00000624009 RSPH4AQ5TD94 716 aa19.61■□□□□ 0.73
LINC00963-217ENST00000624009 ATP7AQ04656 1500 aa19.61■□□□□ 0.73
LINC00963-217ENST00000624009 SPAG9O60271 1321 aaKnown RBP19.6■□□□□ 0.73
LINC00963-217ENST00000624009 RIMS1Q86UR5 1692 aaKnown RBP19.6■□□□□ 0.73
LINC00963-217ENST00000624009 HNRNPMP52272 730 aaKnown RBP eCLIP19.59■□□□□ 0.73
LINC00963-217ENST00000624009 RTEL1-TNFRSF6BF6WH68 1400 aa19.59■□□□□ 0.73
LINC00963-217ENST00000624009 SETD1BQ9UPS6 1966 aaKnown RBP19.58■□□□□ 0.73
LINC00963-217ENST00000624009 APLP2Q06481 763 aa19.58■□□□□ 0.72
LINC00963-217ENST00000624009 MYT1LQ9UL68 1186 aa19.58■□□□□ 0.72
LINC00963-217ENST00000624009 MIA2Q96PC5 1412 aa19.58■□□□□ 0.72
LINC00963-217ENST00000624009 ARHGEF5Q12774 1597 aa19.57■□□□□ 0.72
LINC00963-217ENST00000624009 ADGBQ8N7X0 1667 aa19.57■□□□□ 0.72
LINC00963-217ENST00000624009 CAMSAP2Q08AD1 1489 aa19.57■□□□□ 0.72
LINC00963-217ENST00000624009 PLXNC1O60486 1568 aa19.56■□□□□ 0.72
LINC00963-217ENST00000624009 CCDC141Q6ZP82 1450 aa19.55■□□□□ 0.72
LINC00963-217ENST00000624009 KANK4Q5T7N3 995 aaPredicted RBP19.55■□□□□ 0.72
LINC00963-217ENST00000624009 MYOM3Q5VTT5 1437 aa19.55■□□□□ 0.72
LINC00963-217ENST00000624009 ZNF644Q9H582 1327 aaPredicted RBP19.54■□□□□ 0.72
LINC00963-217ENST00000624009 A2MP01023 1474 aa19.51■□□□□ 0.71
LINC00963-217ENST00000624009 MLECQ14165 292 aa19.49■□□□□ 0.71
LINC00963-217ENST00000624009 CNTLNQ9NXG0 1405 aa19.49■□□□□ 0.71
LINC00963-217ENST00000624009 MAST1Q9Y2H9 1570 aa19.48■□□□□ 0.71
LINC00963-217ENST00000624009 MROH2AA6NES4 1674 aa19.46■□□□□ 0.71
LINC00963-217ENST00000624009 PPP6R1Q9UPN7 881 aa19.46■□□□□ 0.71
LINC00963-217ENST00000624009 TSPY4P0CV99 314 aa19.44■□□□□ 0.7
LINC00963-217ENST00000624009 TSPY10P0CW01 314 aa19.44■□□□□ 0.7
LINC00963-217ENST00000624009 DHX29Q7Z478 1369 aaKnown RBP19.44■□□□□ 0.7
LINC00963-217ENST00000624009 LMTK3Q96Q04 1460 aa19.43■□□□□ 0.7
LINC00963-217ENST00000624009 FAM135AQ9P2D6 1515 aa19.43■□□□□ 0.7
LINC00963-217ENST00000624009 C3P01024 1663 aa19.43■□□□□ 0.7
LINC00963-217ENST00000624009 PTPN23Q9H3S7 1636 aa19.42■□□□□ 0.7
LINC00963-217ENST00000624009 PREX1Q8TCU6 1659 aa19.42■□□□□ 0.7
LINC00963-217ENST00000624009 ESF1Q9H501 851 aaKnown RBP19.41■□□□□ 0.7
LINC00963-217ENST00000624009 TCOF1Q13428 1488 aaKnown RBP19.41■□□□□ 0.7
LINC00963-217ENST00000624009 SHANK2Q9UPX8 1470 aa19.41■□□□□ 0.7
LINC00963-217ENST00000624009 FGD6Q6ZV73 1430 aa19.4■□□□□ 0.7
LINC00963-217ENST00000624009 CROCC2H7BZ55 1655 aa19.39■□□□□ 0.69
LINC00963-217ENST00000624009 NPATQ14207 1427 aa19.36■□□□□ 0.69
LINC00963-217ENST00000624009 DNMT1P26358 1616 aaKnown RBP19.36■□□□□ 0.69
LINC00963-217ENST00000624009 EIF2AK4Q9P2K8 1649 aaKnown RBP19.36■□□□□ 0.69
LINC00963-217ENST00000624009 CLTCQ00610 1675 aaKnown RBP19.34■□□□□ 0.69
LINC00963-217ENST00000624009 RNF17Q9BXT8 1623 aaKnown RBP19.33■□□□□ 0.68
LINC00963-217ENST00000624009 ZMYM3Q14202 1370 aa19.32■□□□□ 0.68
LINC00963-217ENST00000624009 ABCC5O15440 1437 aa19.32■□□□□ 0.68
LINC00963-217ENST00000624009 DUOX2Q9NRD8 1548 aa19.31■□□□□ 0.68
LINC00963-217ENST00000624009 CEBPAP49715 358 aaPredicted RBP19.31■□□□□ 0.68
LINC00963-217ENST00000624009 UHRF1BP1Q6BDS2 1440 aa19.31■□□□□ 0.68
LINC00963-217ENST00000624009 GGT6Q6P531 493 aa19.3■□□□□ 0.68
LINC00963-217ENST00000624009 DAPK1P53355 1430 aa19.3■□□□□ 0.68
LINC00963-217ENST00000624009 KDM5DQ9BY66 1539 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms