RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 EFCAB2Q5VUJ9 269 aa39.18■■■■□ 3.86
CPSF1-214ENST00000622776 RIMS1Q86UR5 1692 aaKnown RBP39.18■■■■□ 3.86
CPSF1-214ENST00000622776 PCF11O94913 1555 aaKnown RBP39.15■■■■□ 3.86
CPSF1-214ENST00000622776 TROQ12816 1431 aaPredicted RBP39.12■■■■□ 3.85
CPSF1-214ENST00000622776 MYO5CQ9NQX4 1742 aa39.11■■■■□ 3.85
CPSF1-214ENST00000622776 LMTK3Q96Q04 1460 aa39.11■■■■□ 3.85
CPSF1-214ENST00000622776 SIGLEC1Q9BZZ2 1709 aa39.11■■■■□ 3.85
CPSF1-214ENST00000622776 KIF14Q15058 1648 aa39.1■■■■□ 3.85
CPSF1-214ENST00000622776 MLECQ14165 292 aa39.07■■■■□ 3.85
CPSF1-214ENST00000622776 PLPPR3Q6T4P5 718 aa39.05■■■■□ 3.84
CPSF1-214ENST00000622776 CLIP1P30622 1438 aa39.05■■■■□ 3.84
CPSF1-214ENST00000622776 ATP10AO60312 1499 aa39.04■■■■□ 3.84
CPSF1-214ENST00000622776 ARHGAP5Q13017 1502 aa38.99■■■■□ 3.83
CPSF1-214ENST00000622776 LRRIQ1Q96JM4 1722 aa38.99■■■■□ 3.83
CPSF1-214ENST00000622776 C9orf84Q5VXU9 1444 aa38.97■■■■□ 3.83
CPSF1-214ENST00000622776 FBXO41Q8TF61 875 aa38.97■■■■□ 3.83
CPSF1-214ENST00000622776 ZNF518AQ6AHZ1 1483 aa38.96■■■■□ 3.83
CPSF1-214ENST00000622776 HSPA2P54652 639 aa38.95■■■■□ 3.83
CPSF1-214ENST00000622776 AFAP1Q8N556 730 aa38.95■■■■□ 3.83
CPSF1-214ENST00000622776 FER1L4A9Z1Z3 1794 aa38.93■■■■□ 3.82
CPSF1-214ENST00000622776 CASKIN1Q8WXD9 1431 aa38.92■■■■□ 3.82
CPSF1-214ENST00000622776 ARHGEF12Q9NZN5 1544 aa38.89■■■■□ 3.82
CPSF1-214ENST00000622776 KDM5CP41229 1560 aa38.88■■■■□ 3.81
CPSF1-214ENST00000622776 CCDC18Q5T9S5 1454 aa38.87■■■■□ 3.81
CPSF1-214ENST00000622776 MYT1LQ9UL68 1186 aa38.86■■■■□ 3.81
CPSF1-214ENST00000622776 CDC42BPBQ9Y5S2 1711 aa38.84■■■■□ 3.81
CPSF1-214ENST00000622776 PREX2Q70Z35 1606 aa38.78■■■■□ 3.8
CPSF1-214ENST00000622776 CEBPAP49715 358 aaPredicted RBP38.76■■■■□ 3.8
CPSF1-214ENST00000622776 MLH3Q9UHC1 1453 aa38.76■■■■□ 3.8
CPSF1-214ENST00000622776 DIP2CQ9Y2E4 1556 aa38.76■■■■□ 3.8
CPSF1-214ENST00000622776 TRAPPC8Q9Y2L5 1435 aa38.74■■■■□ 3.79
CPSF1-214ENST00000622776 FYCO1Q9BQS8 1478 aa38.73■■■■□ 3.79
CPSF1-214ENST00000622776 ABCC1P33527 1531 aa38.73■■■■□ 3.79
CPSF1-214ENST00000622776 REREQ9P2R6 1566 aa38.7■■■■□ 3.79
CPSF1-214ENST00000622776 ABCA6Q8N139 1617 aa38.68■■■■□ 3.78
CPSF1-214ENST00000622776 ITSN2Q9NZM3 1697 aa38.65■■■■□ 3.78
CPSF1-214ENST00000622776 CDC42BPAQ5VT25 1732 aa38.64■■■■□ 3.78
CPSF1-214ENST00000622776 PREX1Q8TCU6 1659 aa38.64■■■■□ 3.78
CPSF1-214ENST00000622776 AGLP35573 1532 aa38.61■■■■□ 3.77
CPSF1-214ENST00000622776 SETD1BQ9UPS6 1966 aaKnown RBP38.6■■■■□ 3.77
CPSF1-214ENST00000622776 ZNF777Q9ULD5 760 aaPredicted RBP38.59■■■■□ 3.77
CPSF1-214ENST00000622776 KIDINS220Q9ULH0 1771 aa38.56■■■■□ 3.76
CPSF1-214ENST00000622776 GPATCH8Q9UKJ3 1502 aaKnown RBP38.55■■■■□ 3.76
CPSF1-214ENST00000622776 ESF1Q9H501 851 aaKnown RBP38.55■■■■□ 3.76
CPSF1-214ENST00000622776 UHRF1BP1Q6BDS2 1440 aa38.54■■■■□ 3.76
CPSF1-214ENST00000622776 CERKQ8TCT0 537 aa38.53■■■■□ 3.76
CPSF1-214ENST00000622776 SAMD9LQ8IVG5 1584 aa38.51■■■■□ 3.76
CPSF1-214ENST00000622776 HNRNPMP52272 730 aaKnown RBP eCLIP38.48■■■■□ 3.75
CPSF1-214ENST00000622776 SYCP2Q9BX26 1530 aa38.48■■■■□ 3.75
CPSF1-214ENST00000622776 C3P01024 1663 aa38.46■■■■□ 3.75
CPSF1-214ENST00000622776 SPAG9O60271 1321 aaKnown RBP38.46■■■■□ 3.75
CPSF1-214ENST00000622776 CFDP1Q9UEE9 299 aaPredicted RBP38.45■■■■□ 3.75
CPSF1-214ENST00000622776 DMRT2Q9Y5R5 561 aa38.45■■■■□ 3.75
CPSF1-214ENST00000622776 CCNB3Q8WWL7 1395 aa38.43■■■■□ 3.74
CPSF1-214ENST00000622776 CNTLNQ9NXG0 1405 aa38.42■■■■□ 3.74
CPSF1-214ENST00000622776 KIAA1107Q9UPP5 1409 aa38.41■■■■□ 3.74
CPSF1-214ENST00000622776 STRCQ7RTU9 1775 aa38.41■■■■□ 3.74
CPSF1-214ENST00000622776 MTUS2Q5JR59 1369 aa38.41■■■■□ 3.74
CPSF1-214ENST00000622776 PLEKHH2Q8IVE3 1493 aa38.39■■■■□ 3.74
CPSF1-214ENST00000622776 ATP7AQ04656 1500 aa38.33■■■■□ 3.73
CPSF1-214ENST00000622776 SUPT6HQ7KZ85 1726 aaKnown RBP38.28■■■■□ 3.72
CPSF1-214ENST00000622776 INO80Q9ULG1 1556 aaPredicted RBP38.27■■■■□ 3.72
CPSF1-214ENST00000622776 ZMYM3Q14202 1370 aa38.26■■■■□ 3.72
CPSF1-214ENST00000622776 PTPRTO14522 1441 aa38.26■■■■□ 3.72
CPSF1-214ENST00000622776 A2MP01023 1474 aa38.26■■■■□ 3.72
CPSF1-214ENST00000622776 NPATQ14207 1427 aa38.24■■■■□ 3.71
CPSF1-214ENST00000622776 ZNF644Q9H582 1327 aaPredicted RBP38.24■■■■□ 3.71
CPSF1-214ENST00000622776 MROH2AA6NES4 1674 aa38.23■■■■□ 3.71
CPSF1-214ENST00000622776 PLXNC1O60486 1568 aa38.23■■■■□ 3.71
CPSF1-214ENST00000622776 EHBP1L1Q8N3D4 1523 aa38.22■■■■□ 3.71
CPSF1-214ENST00000622776 TIAM1Q13009 1591 aa38.21■■■■□ 3.71
CPSF1-214ENST00000622776 CEP162Q5TB80 1403 aa38.2■■■■□ 3.71
CPSF1-214ENST00000622776 NCOA1Q15788 1441 aa38.18■■■■□ 3.7
CPSF1-214ENST00000622776 GGT6Q6P531 493 aa38.17■■■■□ 3.7
CPSF1-214ENST00000622776 MBD5Q9P267 1494 aa38.15■■■■□ 3.7
CPSF1-214ENST00000622776 CLTCQ00610 1675 aaKnown RBP38.13■■■■□ 3.69
CPSF1-214ENST00000622776 PPP6R1Q9UPN7 881 aa38.1■■■■□ 3.69
CPSF1-214ENST00000622776 ADGBQ8N7X0 1667 aa38.1■■■■□ 3.69
CPSF1-214ENST00000622776 RTEL1-TNFRSF6BF6WH68 1400 aa38.08■■■■□ 3.69
CPSF1-214ENST00000622776 CAMSAP1Q5T5Y3 1602 aa38.08■■■■□ 3.69
CPSF1-214ENST00000622776 PTPRKQ15262 1439 aa38.06■■■■□ 3.68
CPSF1-214ENST00000622776 LTBP4Q8N2S1 1624 aa38.02■■■■□ 3.68
CPSF1-214ENST00000622776 DHX29Q7Z478 1369 aaKnown RBP38.02■■■■□ 3.68
CPSF1-214ENST00000622776 NCOA2Q15596 1464 aa38.02■■■■□ 3.68
CPSF1-214ENST00000622776 NCKAP5LQ9HCH0 1330 aa38■■■■□ 3.67
CPSF1-214ENST00000622776 MYO3AQ8NEV4 1616 aa37.98■■■■□ 3.67
CPSF1-214ENST00000622776 CCDC141Q6ZP82 1450 aa37.96■■■■□ 3.67
CPSF1-214ENST00000622776 ZNF142P52746 1687 aaPredicted RBP37.95■■■■□ 3.67
CPSF1-214ENST00000622776 RSPH4AQ5TD94 716 aa37.95■■■■□ 3.67
CPSF1-214ENST00000622776 CAMSAP2Q08AD1 1489 aa37.95■■■■□ 3.67
CPSF1-214ENST00000622776 CEP170BQ9Y4F5 1589 aaPredicted RBP37.94■■■■□ 3.66
CPSF1-214ENST00000622776 PLA2R1Q13018 1463 aa37.92■■■■□ 3.66
CPSF1-214ENST00000622776 KIF3BO15066 747 aa37.92■■■■□ 3.66
CPSF1-214ENST00000622776 PKD2Q13563 968 aa37.92■■■■□ 3.66
CPSF1-214ENST00000622776 IQSEC2Q5JU85 1478 aa37.9■■■■□ 3.66
CPSF1-214ENST00000622776 TCOF1Q13428 1488 aaKnown RBP37.86■■■■□ 3.65
CPSF1-214ENST00000622776 ZNF335Q9H4Z2 1342 aaPredicted RBP37.85■■■■□ 3.65
CPSF1-214ENST00000622776 A2ML1A8K2U0 1454 aa37.83■■■■□ 3.65
CPSF1-214ENST00000622776 LOC105371045A0A1W2PR82 267 aa37.82■■■■□ 3.64
CPSF1-214ENST00000622776 VPS8Q8N3P4 1428 aa37.81■■■■□ 3.64
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms