RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 HNRNPMP52272 730 aaKnown RBP eCLIP17.06■□□□□ 0.32
MSH6-215ENST00000622629 CYB5RLQ6IPT4 315 aa17.05■□□□□ 0.32
MSH6-215ENST00000622629 KNSTRNQ9Y448 316 aa17.05■□□□□ 0.32
MSH6-215ENST00000622629 UACAQ9BZF9 1416 aa17.05■□□□□ 0.32
MSH6-215ENST00000622629 ANKRD30AQ9BXX3 1397 aa17.04■□□□□ 0.32
MSH6-215ENST00000622629 PRKRIP1Q9H875 184 aaPredicted RBP17.04■□□□□ 0.32
MSH6-215ENST00000622629 ZNF608Q9ULD9 1512 aaPredicted RBP17.04■□□□□ 0.32
MSH6-215ENST00000622629 TIAM1Q13009 1591 aa17.03■□□□□ 0.32
MSH6-215ENST00000622629 NCOA2Q15596 1464 aa17.02■□□□□ 0.32
MSH6-215ENST00000622629 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.01■□□□□ 0.31
MSH6-215ENST00000622629 SNAPC4Q5SXM2 1469 aa17■□□□□ 0.31
MSH6-215ENST00000622629 FYCO1Q9BQS8 1478 aa17■□□□□ 0.31
MSH6-215ENST00000622629 NEFMP07197 916 aa16.98■□□□□ 0.31
MSH6-215ENST00000622629 TRHP20396 242 aaPredicted RBP16.98■□□□□ 0.31
MSH6-215ENST00000622629 STAG3Q9UJ98 1225 aa16.98■□□□□ 0.31
MSH6-215ENST00000622629 WASHC2AQ641Q2 1341 aa16.97■□□□□ 0.31
MSH6-215ENST00000622629 ST20-MTHFSA0A0A6YYL1 179 aa16.97■□□□□ 0.31
MSH6-215ENST00000622629 ABCA10Q8WWZ4 1543 aa16.96■□□□□ 0.31
MSH6-215ENST00000622629 WDR97A6NE52 1622 aa16.96■□□□□ 0.31
MSH6-215ENST00000622629 TMF1P82094 1093 aa16.96■□□□□ 0.31
MSH6-215ENST00000622629 ROCK2O75116 1388 aaKnown RBP16.96■□□□□ 0.3
MSH6-215ENST00000622629 PTPRGP23470 1445 aa16.95■□□□□ 0.3
MSH6-215ENST00000622629 NEUROD2Q15784 382 aa16.94■□□□□ 0.3
MSH6-215ENST00000622629 CDCA8Q53HL2 280 aa16.94■□□□□ 0.3
MSH6-215ENST00000622629 TNNT2P45379 298 aaPredicted RBP16.92■□□□□ 0.3
MSH6-215ENST00000622629 ERICH6BQ5W0A0 696 aa16.91■□□□□ 0.3
MSH6-215ENST00000622629 NUDCQ9Y266 331 aa16.9■□□□□ 0.3
MSH6-215ENST00000622629 KIF7Q2M1P5 1343 aa16.9■□□□□ 0.3
MSH6-215ENST00000622629 BIVM-ERCC5R4GMW8 1640 aa16.89■□□□□ 0.3
MSH6-215ENST00000622629 USP47Q96K76 1375 aa16.89■□□□□ 0.29
MSH6-215ENST00000622629 HFM1A2PYH4 1435 aa16.89■□□□□ 0.29
MSH6-215ENST00000622629 KTN1Q86UP2 1357 aaKnown RBP16.88■□□□□ 0.29
MSH6-215ENST00000622629 CCDC7Q96M83 1385 aa16.88■□□□□ 0.29
MSH6-215ENST00000622629 EFCAB5A4FU69 1503 aa16.88■□□□□ 0.29
MSH6-215ENST00000622629 PRKCSHP14314 528 aaPredicted RBP16.88■□□□□ 0.29
MSH6-215ENST00000622629 ESF1Q9H501 851 aaKnown RBP16.88■□□□□ 0.29
MSH6-215ENST00000622629 NOP58Q9Y2X3 529 aaKnown RBP16.87■□□□□ 0.29
MSH6-215ENST00000622629 PCF11O94913 1555 aaKnown RBP16.87■□□□□ 0.29
MSH6-215ENST00000622629 RALBP1Q15311 655 aa16.87■□□□□ 0.29
MSH6-215ENST00000622629 NBPF8Q3BBV2 869 aa16.87■□□□□ 0.29
MSH6-215ENST00000622629 RCAN3Q9UKA8 241 aa16.86■□□□□ 0.29
MSH6-215ENST00000622629 RGS3P49796 1198 aa16.85■□□□□ 0.29
MSH6-215ENST00000622629 NAIPQ13075 1403 aa16.85■□□□□ 0.29
MSH6-215ENST00000622629 PRG4Q92954 1404 aaPredicted RBP16.84■□□□□ 0.29
MSH6-215ENST00000622629 EFCAB2Q5VUJ9 269 aa16.84■□□□□ 0.29
MSH6-215ENST00000622629 ZBED9Q6R2W3 1325 aa16.84■□□□□ 0.29
MSH6-215ENST00000622629 KIF21AQ7Z4S6 1674 aa16.84■□□□□ 0.29
MSH6-215ENST00000622629 CCDC184Q52MB2 194 aa16.84■□□□□ 0.29
MSH6-215ENST00000622629 UPF2Q9HAU5 1272 aaKnown RBP16.84■□□□□ 0.29
MSH6-215ENST00000622629 LAS1LQ9Y4W2 734 aaKnown RBP16.83■□□□□ 0.28
MSH6-215ENST00000622629 NLRP13Q86W25 1043 aa16.83■□□□□ 0.28
MSH6-215ENST00000622629 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.8■□□□□ 0.284e-9■■■□□ 16.4
MSH6-215ENST00000622629 FRAT1Q92837 279 aaPredicted RBP16.8■□□□□ 0.28
MSH6-215ENST00000622629 CNTLNQ9NXG0 1405 aa16.8■□□□□ 0.28
MSH6-215ENST00000622629 RSPH4AQ5TD94 716 aa16.79■□□□□ 0.28
MSH6-215ENST00000622629 PRDM2Q13029 1718 aa16.78■□□□□ 0.28
MSH6-215ENST00000622629 MAP3K1Q13233 1512 aa16.78■□□□□ 0.28
MSH6-215ENST00000622629 GGT6Q6P531 493 aa16.78■□□□□ 0.28
MSH6-215ENST00000622629 ARID4BQ4LE39 1312 aaPredicted RBP16.77■□□□□ 0.28
MSH6-215ENST00000622629 KIF3BO15066 747 aa16.77■□□□□ 0.27
MSH6-215ENST00000622629 PANK3Q9H999 370 aa16.77■□□□□ 0.27
MSH6-215ENST00000622629 KIF15Q9NS87 1388 aa16.77■□□□□ 0.27
MSH6-215ENST00000622629 CCDC144AA2RUR9 1427 aa16.77■□□□□ 0.27
MSH6-215ENST00000622629 CFAP53Q96M91 514 aa16.77■□□□□ 0.27
MSH6-215ENST00000622629 MYBBP1AQ9BQG0 1328 aaKnown RBP16.76■□□□□ 0.27
MSH6-215ENST00000622629 ANKRD50Q9ULJ7 1429 aa16.76■□□□□ 0.27
MSH6-215ENST00000622629 PPM1GO15355 546 aaPredicted RBP16.76■□□□□ 0.27
MSH6-215ENST00000622629 SAFB2Q14151 953 aaKnown RBP eCLIP16.76■□□□□ 0.27
MSH6-215ENST00000622629 EHBP1L1Q8N3D4 1523 aa16.75■□□□□ 0.27
MSH6-215ENST00000622629 CDK13Q14004 1512 aaKnown RBP16.75■□□□□ 0.27
MSH6-215ENST00000622629 C11orf95C9JLR9 678 aaPredicted RBP16.74■□□□□ 0.27
MSH6-215ENST00000622629 KANK1Q14678 1352 aa16.74■□□□□ 0.27
MSH6-215ENST00000622629 MLECQ14165 292 aa16.74■□□□□ 0.27
MSH6-215ENST00000622629 SYNJ2O15056 1496 aa16.74■□□□□ 0.27
MSH6-215ENST00000622629 ARXQ96QS3 562 aa16.74■□□□□ 0.27
MSH6-215ENST00000622629 DDRGK1Q96HY6 314 aa16.73■□□□□ 0.27
MSH6-215ENST00000622629 SPAG9O60271 1321 aaKnown RBP16.73■□□□□ 0.27
MSH6-215ENST00000622629 MAPKBP1O60336 1514 aa16.73■□□□□ 0.27
MSH6-215ENST00000622629 GRIN2AQ12879 1464 aa16.72■□□□□ 0.27
MSH6-215ENST00000622629 MIA2Q96PC5 1412 aa16.72■□□□□ 0.27
MSH6-215ENST00000622629 PLIN1O60240 522 aa16.72■□□□□ 0.27
MSH6-215ENST00000622629 HSP90AA1P07900 732 aaKnown RBP16.71■□□□□ 0.27
MSH6-215ENST00000622629 EPRSP07814 1512 aaKnown RBP16.7■□□□□ 0.26
MSH6-215ENST00000622629 CCDC146Q8IYE0 955 aa16.7■□□□□ 0.26
MSH6-215ENST00000622629 MORC1Q86VD1 984 aa16.7■□□□□ 0.26
MSH6-215ENST00000622629 KIAA0586Q9BVV6 1533 aa16.7■□□□□ 0.26
MSH6-215ENST00000622629 U2SURPO15042 1029 aaKnown RBP16.7■□□□□ 0.26
MSH6-215ENST00000622629 EXOC6Q8TAG9 804 aa16.7■□□□□ 0.26
MSH6-215ENST00000622629 PTPRKQ15262 1439 aa16.69■□□□□ 0.26
MSH6-215ENST00000622629 MAGI1Q96QZ7 1491 aaPredicted RBP16.68■□□□□ 0.26
MSH6-215ENST00000622629 EIF5BO60841 1220 aaKnown RBP16.68■□□□□ 0.26
MSH6-215ENST00000622629 SUPT6HQ7KZ85 1726 aaKnown RBP16.68■□□□□ 0.26
MSH6-215ENST00000622629 POGKQ9P215 609 aa16.67■□□□□ 0.26
MSH6-215ENST00000622629 PDE3BQ13370 1112 aa16.66■□□□□ 0.26
MSH6-215ENST00000622629 FTSJ3Q8IY81 847 aaKnown RBP16.66■□□□□ 0.26
MSH6-215ENST00000622629 DAPK1P53355 1430 aa16.66■□□□□ 0.26
MSH6-215ENST00000622629 DEKP35659 375 aaKnown RBP16.66■□□□□ 0.26
MSH6-215ENST00000622629 STK26Q9P289 416 aa16.65■□□□□ 0.26
MSH6-215ENST00000622629 TCERG1O14776 1098 aaKnown RBP16.65■□□□□ 0.26
MSH6-215ENST00000622629 NBPF1Q3BBV0 1214 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms