RNA–Protein interactions for RNA: ENST00000621747.5

VEGFA-229, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-229ENST00000621747 POGZQ7Z3K3 1410 aa40.57■■■■■ 4.08
VEGFA-229ENST00000621747 CEP162Q5TB80 1403 aa40.56■■■■■ 4.08
VEGFA-229ENST00000621747 MAGI2Q86UL8 1455 aa40.54■■■■■ 4.08
VEGFA-229ENST00000621747 ARID4BQ4LE39 1312 aaPredicted RBP40.52■■■■■ 4.08
VEGFA-229ENST00000621747 ZFYVE16Q7Z3T8 1539 aa40.51■■■■■ 4.08
VEGFA-229ENST00000621747 PREX2Q70Z35 1606 aa40.45■■■■■ 4.07
VEGFA-229ENST00000621747 YEATS2Q9ULM3 1422 aa40.44■■■■■ 4.06
VEGFA-229ENST00000621747 CDC42BPBQ9Y5S2 1711 aa40.44■■■■■ 4.06
VEGFA-229ENST00000621747 ADAMTSL3P82987 1691 aa40.43■■■■■ 4.06
VEGFA-229ENST00000621747 BCORL1Q5H9F3 1711 aa40.42■■■■■ 4.06
VEGFA-229ENST00000621747 ZNF518AQ6AHZ1 1483 aa40.42■■■■■ 4.06
VEGFA-229ENST00000621747 MTUS2Q5JR59 1369 aa40.35■■■■■ 4.05
VEGFA-229ENST00000621747 CDC42BPAQ5VT25 1732 aa40.34■■■■■ 4.05
VEGFA-229ENST00000621747 LOC105371045A0A1W2PR82 267 aa40.34■■■■■ 4.05
VEGFA-229ENST00000621747 AFAP1Q8N556 730 aa40.32■■■■■ 4.05
VEGFA-229ENST00000621747 PTPRMP28827 1452 aa40.32■■■■■ 4.04
VEGFA-229ENST00000621747 KDM5CP41229 1560 aa40.31■■■■■ 4.04
VEGFA-229ENST00000621747 ABCC1P33527 1531 aa40.31■■■■■ 4.04
VEGFA-229ENST00000621747 ATP10AO60312 1499 aa40.3■■■■■ 4.04
VEGFA-229ENST00000621747 MADDQ8WXG6 1647 aa40.29■■■■■ 4.04
VEGFA-229ENST00000621747 GPATCH8Q9UKJ3 1502 aaKnown RBP40.26■■■■■ 4.04
VEGFA-229ENST00000621747 C9orf84Q5VXU9 1444 aa40.26■■■■■ 4.04
VEGFA-229ENST00000621747 MYT1LQ9UL68 1186 aa40.25■■■■■ 4.03
VEGFA-229ENST00000621747 HECW2Q9P2P5 1572 aa40.24■■■■■ 4.03
VEGFA-229ENST00000621747 CCNB3Q8WWL7 1395 aa40.23■■■■■ 4.03
VEGFA-229ENST00000621747 SIGLEC1Q9BZZ2 1709 aa40.22■■■■■ 4.03
VEGFA-229ENST00000621747 EHBP1L1Q8N3D4 1523 aa40.22■■■■■ 4.03
VEGFA-229ENST00000621747 ARHGEF12Q9NZN5 1544 aa40.22■■■■■ 4.03
VEGFA-229ENST00000621747 ITSN2Q9NZM3 1697 aa40.22■■■■■ 4.03
VEGFA-229ENST00000621747 ZNF777Q9ULD5 760 aaPredicted RBP40.21■■■■■ 4.03
VEGFA-229ENST00000621747 TRAPPC8Q9Y2L5 1435 aa40.21■■■■■ 4.03
VEGFA-229ENST00000621747 MLH3Q9UHC1 1453 aa40.19■■■■■ 4.02
VEGFA-229ENST00000621747 CFDP1Q9UEE9 299 aaPredicted RBP40.16■■■■■ 4.02
VEGFA-229ENST00000621747 RIMS1Q86UR5 1692 aaKnown RBP40.15■■■■■ 4.02
VEGFA-229ENST00000621747 SAMD9LQ8IVG5 1584 aa40.15■■■■■ 4.02
VEGFA-229ENST00000621747 MLECQ14165 292 aa40.14■■■■■ 4.02
VEGFA-229ENST00000621747 VPS8Q8N3P4 1428 aa40.12■■■■■ 4.01
VEGFA-229ENST00000621747 DIP2CQ9Y2E4 1556 aa40.12■■■■■ 4.01
VEGFA-229ENST00000621747 PLEKHH2Q8IVE3 1493 aa40.1■■■■■ 4.01
VEGFA-229ENST00000621747 SYCP2Q9BX26 1530 aa40.09■■■■■ 4.01
VEGFA-229ENST00000621747 REREQ9P2R6 1566 aa40.07■■■■■ 4.01
VEGFA-229ENST00000621747 ABCA6Q8N139 1617 aa40.07■■■■■ 4.01
VEGFA-229ENST00000621747 KIAA1107Q9UPP5 1409 aa40.07■■■■■ 4
VEGFA-229ENST00000621747 TIAM1Q13009 1591 aa40.06■■■■■ 4
VEGFA-229ENST00000621747 HNRNPMP52272 730 aaKnown RBP eCLIP40.04■■■■■ 41e-12■■■■■ 34.3
VEGFA-229ENST00000621747 FER1L4A9Z1Z3 1794 aa40.02■■■■■ 4
VEGFA-229ENST00000621747 KIDINS220Q9ULH0 1771 aa40■■■■□ 3.99
VEGFA-229ENST00000621747 SPAG9O60271 1321 aaKnown RBP39.98■■■■□ 3.99
VEGFA-229ENST00000621747 SUPT6HQ7KZ85 1726 aaKnown RBP39.97■■■■□ 3.99
VEGFA-229ENST00000621747 NCOA2Q15596 1464 aa39.95■■■■□ 3.99
VEGFA-229ENST00000621747 PLPPR3Q6T4P5 718 aa39.95■■■■□ 3.99
VEGFA-229ENST00000621747 AGLP35573 1532 aa39.94■■■■□ 3.98
VEGFA-229ENST00000621747 ZNF644Q9H582 1327 aaPredicted RBP39.89■■■■□ 3.98
VEGFA-229ENST00000621747 LRRC9Q6ZRR7 1453 aa39.88■■■■□ 3.98
VEGFA-229ENST00000621747 ATP7AQ04656 1500 aa39.88■■■■□ 3.97
VEGFA-229ENST00000621747 MAP3K1Q13233 1512 aa39.86■■■■□ 3.97
VEGFA-229ENST00000621747 LMTK3Q96Q04 1460 aa39.85■■■■□ 3.97
VEGFA-229ENST00000621747 INO80Q9ULG1 1556 aaPredicted RBP39.84■■■■□ 3.97
VEGFA-229ENST00000621747 MBD5Q9P267 1494 aa39.82■■■■□ 3.97
VEGFA-229ENST00000621747 ESF1Q9H501 851 aaKnown RBP39.79■■■■□ 3.96
VEGFA-229ENST00000621747 CAMSAP2Q08AD1 1489 aa39.75■■■■□ 3.95
VEGFA-229ENST00000621747 A2MP01023 1474 aa39.74■■■■□ 3.95
VEGFA-229ENST00000621747 CEBPAP49715 358 aaPredicted RBP39.73■■■■□ 3.95
VEGFA-229ENST00000621747 KANK4Q5T7N3 995 aaPredicted RBP39.73■■■■□ 3.95
VEGFA-229ENST00000621747 RTEL1-TNFRSF6BF6WH68 1400 aa39.72■■■■□ 3.95
VEGFA-229ENST00000621747 RSPH4AQ5TD94 716 aa39.71■■■■□ 3.95
VEGFA-229ENST00000621747 CCDC141Q6ZP82 1450 aa39.7■■■■□ 3.95
VEGFA-229ENST00000621747 PLXNC1O60486 1568 aa39.7■■■■□ 3.95
VEGFA-229ENST00000621747 CNTLNQ9NXG0 1405 aa39.69■■■■□ 3.94
VEGFA-229ENST00000621747 APLP2Q06481 763 aa39.69■■■■□ 3.94
VEGFA-229ENST00000621747 ADGBQ8N7X0 1667 aa39.67■■■■□ 3.94
VEGFA-229ENST00000621747 HSPA2P54652 639 aa39.63■■■■□ 3.93
VEGFA-229ENST00000621747 PREX1Q8TCU6 1659 aa39.62■■■■□ 3.93
VEGFA-229ENST00000621747 C3P01024 1663 aa39.6■■■■□ 3.93
VEGFA-229ENST00000621747 ARHGEF5Q12774 1597 aa39.59■■■■□ 3.93
VEGFA-229ENST00000621747 MYOM3Q5VTT5 1437 aa39.57■■■■□ 3.93
VEGFA-229ENST00000621747 MIA2Q96PC5 1412 aa39.56■■■■□ 3.92
VEGFA-229ENST00000621747 TSPY4P0CV99 314 aa39.55■■■■□ 3.92
VEGFA-229ENST00000621747 TSPY10P0CW01 314 aa39.55■■■■□ 3.92
VEGFA-229ENST00000621747 DHX29Q7Z478 1369 aaKnown RBP39.55■■■■□ 3.92
VEGFA-229ENST00000621747 UHRF1BP1Q6BDS2 1440 aa39.55■■■■□ 3.92
VEGFA-229ENST00000621747 GGT6Q6P531 493 aa39.53■■■■□ 3.92
VEGFA-229ENST00000621747 MROH2AA6NES4 1674 aa39.53■■■■□ 3.92
VEGFA-229ENST00000621747 SETD1BQ9UPS6 1966 aaKnown RBP39.5■■■■□ 3.91
VEGFA-229ENST00000621747 PPP6R1Q9UPN7 881 aa39.49■■■■□ 3.91
VEGFA-229ENST00000621747 ZMYM3Q14202 1370 aa39.47■■■■□ 3.91
VEGFA-229ENST00000621747 CLTCQ00610 1675 aaKnown RBP39.45■■■■□ 3.91
VEGFA-229ENST00000621747 NPATQ14207 1427 aa39.42■■■■□ 3.9
VEGFA-229ENST00000621747 MAST1Q9Y2H9 1570 aa39.39■■■■□ 3.9
VEGFA-229ENST00000621747 KIF3BO15066 747 aa39.39■■■■□ 3.9
VEGFA-229ENST00000621747 ILDR1Q86SU0 546 aaPredicted RBP39.36■■■■□ 3.89
VEGFA-229ENST00000621747 PTPN23Q9H3S7 1636 aa39.31■■■■□ 3.88
VEGFA-229ENST00000621747 FAM135AQ9P2D6 1515 aa39.29■■■■□ 3.88
VEGFA-229ENST00000621747 PTPRKQ15262 1439 aa39.28■■■■□ 3.88
VEGFA-229ENST00000621747 FGD6Q6ZV73 1430 aa39.27■■■■□ 3.88
VEGFA-229ENST00000621747 KDM5DQ9BY66 1539 aa39.25■■■■□ 3.87
VEGFA-229ENST00000621747 DMRT2Q9Y5R5 561 aa39.25■■■■□ 3.87
VEGFA-229ENST00000621747 WASHC2CQ9Y4E1 1318 aa39.22■■■■□ 3.87
VEGFA-229ENST00000621747 TCOF1Q13428 1488 aaKnown RBP39.22■■■■□ 3.87
VEGFA-229ENST00000621747 SHANK2Q9UPX8 1470 aa39.22■■■■□ 3.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms