RNA–Protein interactions for RNA: ENST00000621708.4

PCDH15-233, Transcript of protocadherin related 15, human

APPRIS ALT2 TSL 5 BASIC

Gene PCDH15, Length 5,700 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCDH15-233	ENST00000621708	MLEC	Q14165	292 aa		11.56	□□□□□ -0.56
PCDH15-233	ENST00000621708	UNC13A	Q9UPW8	1703 aa		11.55	□□□□□ -0.56
PCDH15-233	ENST00000621708	ABCA10	Q8WWZ4	1543 aa		11.55	□□□□□ -0.56
PCDH15-233	ENST00000621708	SYNJ2	O15056	1496 aa		11.55	□□□□□ -0.56
PCDH15-233	ENST00000621708	MYH16	Q9H6N6	1097 aa		11.54	□□□□□ -0.56
PCDH15-233	ENST00000621708	HAP1	P54257	671 aa	Predicted RBP	11.54	□□□□□ -0.56
PCDH15-233	ENST00000621708	SALL2	Q9Y467	1007 aa	Predicted RBP	11.53	□□□□□ -0.56
PCDH15-233	ENST00000621708	NPM2	Q86SE8	214 aa	Known RBP	11.53	□□□□□ -0.56
PCDH15-233	ENST00000621708	MAPK8IP3	Q9UPT6	1336 aa		11.53	□□□□□ -0.56
PCDH15-233	ENST00000621708	WASHC2C	Q9Y4E1	1318 aa		11.53	□□□□□ -0.56
PCDH15-233	ENST00000621708	ROCK2	O75116	1388 aa	Known RBP	11.52	□□□□□ -0.56
PCDH15-233	ENST00000621708	PRDM2	Q13029	1718 aa		11.52	□□□□□ -0.56
PCDH15-233	ENST00000621708	CUL7	Q14999	1698 aa		11.52	□□□□□ -0.56
PCDH15-233	ENST00000621708	LRRC9	Q6ZRR7	1453 aa		11.52	□□□□□ -0.57
PCDH15-233	ENST00000621708	CCDC136	Q96JN2	1154 aa		11.52	□□□□□ -0.57
PCDH15-233	ENST00000621708	FGD6	Q6ZV73	1430 aa		11.52	□□□□□ -0.57
PCDH15-233	ENST00000621708	SNAPC4	Q5SXM2	1469 aa		11.51	□□□□□ -0.57
PCDH15-233	ENST00000621708	CCER2	I3L3R5	266 aa		11.51	□□□□□ -0.57
PCDH15-233	ENST00000621708	PRG4	Q92954	1404 aa	Predicted RBP	11.5	□□□□□ -0.57
PCDH15-233	ENST00000621708	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.5	□□□□□ -0.57
PCDH15-233	ENST00000621708	EID1	Q9Y6B2	187 aa		11.49	□□□□□ -0.57
PCDH15-233	ENST00000621708	HSPA5	P11021	654 aa	Known RBP	11.49	□□□□□ -0.57
PCDH15-233	ENST00000621708	CCDC144A	A2RUR9	1427 aa		11.49	□□□□□ -0.57
PCDH15-233	ENST00000621708	HECW1	Q76N89	1606 aa		11.49	□□□□□ -0.57
PCDH15-233	ENST00000621708	EHBP1L1	Q8N3D4	1523 aa		11.49	□□□□□ -0.57
PCDH15-233	ENST00000621708	SRPK2	P78362	688 aa	Known RBP	11.49	□□□□□ -0.57
PCDH15-233	ENST00000621708	ZBTB7C	A1YPR0	619 aa		11.49	□□□□□ -0.57
PCDH15-233	ENST00000621708	PLEKHH2	Q8IVE3	1493 aa		11.49	□□□□□ -0.57
PCDH15-233	ENST00000621708	STAC3	Q96MF2	364 aa		11.49	□□□□□ -0.57
PCDH15-233	ENST00000621708	CHMP4B	Q9H444	224 aa	Known RBP	11.49	□□□□□ -0.57
PCDH15-233	ENST00000621708	EIF5B	O60841	1220 aa	Known RBP	11.48	□□□□□ -0.57
PCDH15-233	ENST00000621708	KIAA0586	Q9BVV6	1533 aa		11.48	□□□□□ -0.57
PCDH15-233	ENST00000621708	CYB5RL	Q6IPT4	315 aa		11.48	□□□□□ -0.57
PCDH15-233	ENST00000621708	KTN1	Q86UP2	1357 aa	Known RBP	11.47	□□□□□ -0.57
PCDH15-233	ENST00000621708	MS4A1	P11836	297 aa		11.47	□□□□□ -0.57
PCDH15-233	ENST00000621708	SENP3	Q9H4L4	574 aa	Predicted RBP	11.47	□□□□□ -0.57
PCDH15-233	ENST00000621708	NCOA2	Q15596	1464 aa		11.46	□□□□□ -0.57
PCDH15-233	ENST00000621708	MAGI1	Q96QZ7	1491 aa	Predicted RBP	11.46	□□□□□ -0.57
PCDH15-233	ENST00000621708	BCL11A	Q9H165	835 aa		11.46	□□□□□ -0.58
PCDH15-233	ENST00000621708	RALBP1	Q15311	655 aa		11.45	□□□□□ -0.58
PCDH15-233	ENST00000621708	MORC1	Q86VD1	984 aa		11.44	□□□□□ -0.58
PCDH15-233	ENST00000621708	PPM1G	O15355	546 aa	Predicted RBP	11.44	□□□□□ -0.58
PCDH15-233	ENST00000621708	FOXD1	Q16676	465 aa		11.44	□□□□□ -0.58
PCDH15-233	ENST00000621708	MIA2	Q96PC5	1412 aa		11.44	□□□□□ -0.58
PCDH15-233	ENST00000621708	DHX57	Q6P158	1386 aa	Known RBP	11.43	□□□□□ -0.58
PCDH15-233	ENST00000621708	BIVM-ERCC5	R4GMW8	1640 aa		11.43	□□□□□ -0.58
PCDH15-233	ENST00000621708	ARAP1	Q96P48	1450 aa		11.43	□□□□□ -0.58
PCDH15-233	ENST00000621708	L3MBTL2	Q969R5	705 aa		11.42	□□□□□ -0.58
PCDH15-233	ENST00000621708	CC2D1B	Q5T0F9	858 aa	Known RBP	11.42	□□□□□ -0.58
PCDH15-233	ENST00000621708	ARHGAP5	Q13017	1502 aa		11.42	□□□□□ -0.58
PCDH15-233	ENST00000621708	IQGAP2	Q13576	1575 aa		11.42	□□□□□ -0.58
PCDH15-233	ENST00000621708	VGF	O15240	615 aa	Predicted RBP	11.42	□□□□□ -0.58
PCDH15-233	ENST00000621708	KIF15	Q9NS87	1388 aa		11.42	□□□□□ -0.58
PCDH15-233	ENST00000621708	TRO	Q12816	1431 aa	Predicted RBP	11.41	□□□□□ -0.58
PCDH15-233	ENST00000621708	TERF2IP	Q9NYB0	399 aa		11.41	□□□□□ -0.58
PCDH15-233	ENST00000621708	HSP90AA1	P07900	732 aa	Known RBP	11.4	□□□□□ -0.58
PCDH15-233	ENST00000621708	LMOD2	Q6P5Q4	547 aa		11.4	□□□□□ -0.58
PCDH15-233	ENST00000621708	FAM69C	Q0P6D2	419 aa		11.4	□□□□□ -0.58
PCDH15-233	ENST00000621708	STK26	Q9P289	416 aa		11.39	□□□□□ -0.59
PCDH15-233	ENST00000621708	RRBP1	Q9P2E9	1410 aa	Known RBP	11.39	□□□□□ -0.59
PCDH15-233	ENST00000621708	PHLDB1	Q86UU1	1377 aa		11.39	□□□□□ -0.59
PCDH15-233	ENST00000621708	CALD1	Q05682	793 aa	Known RBP	11.38	□□□□□ -0.59
PCDH15-233	ENST00000621708	U2SURP	O15042	1029 aa	Known RBP	11.38	□□□□□ -0.59
PCDH15-233	ENST00000621708	FTSJ3	Q8IY81	847 aa	Known RBP	11.38	□□□□□ -0.59
PCDH15-233	ENST00000621708	ANKRD50	Q9ULJ7	1429 aa		11.38	□□□□□ -0.59
PCDH15-233	ENST00000621708	TIAM1	Q13009	1591 aa		11.38	□□□□□ -0.59
PCDH15-233	ENST00000621708	CHMP4A	Q9BY43	222 aa		11.38	□□□□□ -0.59
PCDH15-233	ENST00000621708	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	11.37	□□□□□ -0.59
PCDH15-233	ENST00000621708		A0A0G2JS52	829 aa		11.36	□□□□□ -0.59
PCDH15-233	ENST00000621708	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	11.36	□□□□□ -0.59
PCDH15-233	ENST00000621708	SUPT6H	Q7KZ85	1726 aa	Known RBP	11.36	□□□□□ -0.59
PCDH15-233	ENST00000621708	GRIN2A	Q12879	1464 aa		11.36	□□□□□ -0.59
PCDH15-233	ENST00000621708	URB2	Q14146	1524 aa	Known RBP	11.36	□□□□□ -0.59
PCDH15-233	ENST00000621708	SAFB2	Q14151	953 aa	Known RBP eCLIP	11.35	□□□□□ -0.59
PCDH15-233	ENST00000621708	TNNT2	P45379	298 aa	Predicted RBP	11.34	□□□□□ -0.59
PCDH15-233	ENST00000621708	MAP3K1	Q13233	1512 aa		11.34	□□□□□ -0.59
PCDH15-233	ENST00000621708	PLEKHG5	O94827	1062 aa		11.34	□□□□□ -0.59
PCDH15-233	ENST00000621708	NEUROD2	Q15784	382 aa		11.32	□□□□□ -0.6
PCDH15-233	ENST00000621708	CASC1	Q6TDU7	716 aa		11.32	□□□□□ -0.6
PCDH15-233	ENST00000621708	RTF1	Q92541	710 aa	Known RBP	11.32	□□□□□ -0.6
PCDH15-233	ENST00000621708	LAS1L	Q9Y4W2	734 aa	Known RBP	11.31	□□□□□ -0.6
PCDH15-233	ENST00000621708	EVC2	Q86UK5	1308 aa		11.31	□□□□□ -0.6
PCDH15-233	ENST00000621708	HFM1	A2PYH4	1435 aa		11.31	□□□□□ -0.6
PCDH15-233	ENST00000621708	EPRS	P07814	1512 aa	Known RBP	11.31	□□□□□ -0.6
PCDH15-233	ENST00000621708	DDRGK1	Q96HY6	314 aa		11.31	□□□□□ -0.6
PCDH15-233	ENST00000621708	C9orf84	Q5VXU9	1444 aa		11.3	□□□□□ -0.6
PCDH15-233	ENST00000621708	NLRP13	Q86W25	1043 aa		11.3	□□□□□ -0.6
PCDH15-233	ENST00000621708	PPP4R2	Q9NY27	417 aa		11.3	□□□□□ -0.6
PCDH15-233	ENST00000621708	ZNF644	Q9H582	1327 aa	Predicted RBP	11.29	□□□□□ -0.6
PCDH15-233	ENST00000621708	BECN1	Q14457	450 aa		11.28	□□□□□ -0.6
PCDH15-233	ENST00000621708	ANP32B	Q92688	251 aa	Known RBP	11.28	□□□□□ -0.6
PCDH15-233	ENST00000621708	DNAJC5B	Q9UF47	199 aa		11.28	□□□□□ -0.6
PCDH15-233	ENST00000621708	ERICH6B	Q5W0A0	696 aa		11.28	□□□□□ -0.6
PCDH15-233	ENST00000621708	USP47	Q96K76	1375 aa		11.28	□□□□□ -0.6
PCDH15-233	ENST00000621708	LMOD3	Q0VAK6	560 aa		11.28	□□□□□ -0.6
PCDH15-233	ENST00000621708	IPO8	O15397	1037 aa	Known RBP	11.27	□□□□□ -0.61
PCDH15-233	ENST00000621708	NGDN	Q8NEJ9	315 aa	Known RBP	11.27	□□□□□ -0.61
PCDH15-233	ENST00000621708	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.27	□□□□□ -0.61
PCDH15-233	ENST00000621708	CFAP44	Q96MT7	982 aa		11.27	□□□□□ -0.61
PCDH15-233	ENST00000621708	ROCK1	Q13464	1354 aa		11.27	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms