RNA–Protein interactions for RNA: ENST00000618939.4

CNOT3-210, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 5

Gene CNOT3, Length 4,516 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-210ENST00000618939 SLC24A1O60721 1099 aa18.25■□□□□ 0.51
CNOT3-210ENST00000618939 RALBP1Q15311 655 aa18.24■□□□□ 0.51
CNOT3-210ENST00000618939 SENP3Q9H4L4 574 aaPredicted RBP18.24■□□□□ 0.51
CNOT3-210ENST00000618939 EFCAB5A4FU69 1503 aa18.24■□□□□ 0.51
CNOT3-210ENST00000618939 UNC13AQ9UPW8 1703 aa18.22■□□□□ 0.51
CNOT3-210ENST00000618939 NESP48681 1621 aa18.22■□□□□ 0.51
CNOT3-210ENST00000618939 CFAP53Q96M91 514 aa18.22■□□□□ 0.51
CNOT3-210ENST00000618939 POLA1P09884 1462 aaPredicted RBP18.22■□□□□ 0.51
CNOT3-210ENST00000618939 TOPBP1Q92547 1522 aa18.22■□□□□ 0.51
CNOT3-210ENST00000618939 DDRGK1Q96HY6 314 aa18.22■□□□□ 0.51
CNOT3-210ENST00000618939 RSPH4AQ5TD94 716 aa18.2■□□□□ 0.5
CNOT3-210ENST00000618939 NUDCQ9Y266 331 aa18.2■□□□□ 0.5
CNOT3-210ENST00000618939 NOP58Q9Y2X3 529 aaKnown RBP18.2■□□□□ 0.5
CNOT3-210ENST00000618939 ZNF644Q9H582 1327 aaPredicted RBP18.2■□□□□ 0.5
CNOT3-210ENST00000618939 EFCAB2Q5VUJ9 269 aa18.19■□□□□ 0.5
CNOT3-210ENST00000618939 AQRO60306 1485 aaKnown RBP eCLIP18.19■□□□□ 0.57e-9■■■■■ 27
CNOT3-210ENST00000618939 KANK1Q14678 1352 aa18.19■□□□□ 0.5
CNOT3-210ENST00000618939 NEUROD2Q15784 382 aa18.18■□□□□ 0.5
CNOT3-210ENST00000618939 ST20-MTHFSA0A0A6YYL1 179 aa18.16■□□□□ 0.5
CNOT3-210ENST00000618939 HSP90AA1P07900 732 aaKnown RBP18.15■□□□□ 0.5
CNOT3-210ENST00000618939 USP47Q96K76 1375 aa18.15■□□□□ 0.5
CNOT3-210ENST00000618939 RCAN3Q9UKA8 241 aa18.15■□□□□ 0.5
CNOT3-210ENST00000618939 NLRP13Q86W25 1043 aa18.14■□□□□ 0.49
CNOT3-210ENST00000618939 CC2D2AQ9P2K1 1620 aa18.14■□□□□ 0.49
CNOT3-210ENST00000618939 TNNT2P45379 298 aaPredicted RBP18.14■□□□□ 0.49
CNOT3-210ENST00000618939 HFM1A2PYH4 1435 aa18.13■□□□□ 0.49
CNOT3-210ENST00000618939 ZBED9Q6R2W3 1325 aa18.13■□□□□ 0.49
CNOT3-210ENST00000618939 CCDC7Q96M83 1385 aa18.12■□□□□ 0.49
CNOT3-210ENST00000618939 DNMBPQ6XZF7 1577 aa18.12■□□□□ 0.49
CNOT3-210ENST00000618939 BIVM-ERCC5R4GMW8 1640 aa18.12■□□□□ 0.49
CNOT3-210ENST00000618939 WASHC2AQ641Q2 1341 aa18.12■□□□□ 0.49
CNOT3-210ENST00000618939 RGS3P49796 1198 aa18.11■□□□□ 0.49
CNOT3-210ENST00000618939 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.11■□□□□ 0.497e-11■■□□□ 13.1
CNOT3-210ENST00000618939 KIF15Q9NS87 1388 aa18.11■□□□□ 0.49
CNOT3-210ENST00000618939 CCDC144AA2RUR9 1427 aa18.09■□□□□ 0.49
CNOT3-210ENST00000618939 ABCA10Q8WWZ4 1543 aa18.09■□□□□ 0.49
CNOT3-210ENST00000618939 KIF7Q2M1P5 1343 aa18.09■□□□□ 0.49
CNOT3-210ENST00000618939 GRIN2BQ13224 1484 aa18.09■□□□□ 0.49
CNOT3-210ENST00000618939 PTPRGP23470 1445 aa18.08■□□□□ 0.49
CNOT3-210ENST00000618939 EHBP1L1Q8N3D4 1523 aa18.08■□□□□ 0.49
CNOT3-210ENST00000618939 WDR97A6NE52 1622 aa18.08■□□□□ 0.49
CNOT3-210ENST00000618939 MAP3K1Q13233 1512 aa18.08■□□□□ 0.48
CNOT3-210ENST00000618939 CNTLNQ9NXG0 1405 aa18.08■□□□□ 0.48
CNOT3-210ENST00000618939 PPM1GO15355 546 aaPredicted RBP18.08■□□□□ 0.48
CNOT3-210ENST00000618939 FRAT1Q92837 279 aaPredicted RBP18.08■□□□□ 0.48
CNOT3-210ENST00000618939 MYBBP1AQ9BQG0 1328 aaKnown RBP18.08■□□□□ 0.48
CNOT3-210ENST00000618939 BECN1Q14457 450 aa18.07■□□□□ 0.48
CNOT3-210ENST00000618939 PCF11O94913 1555 aaKnown RBP18.06■□□□□ 0.48
CNOT3-210ENST00000618939 LAS1LQ9Y4W2 734 aaKnown RBP18.06■□□□□ 0.48
CNOT3-210ENST00000618939 PLPPR3Q6T4P5 718 aa18.06■□□□□ 0.48
CNOT3-210ENST00000618939 PDE3BQ13370 1112 aa18.04■□□□□ 0.48
CNOT3-210ENST00000618939 FTSJ3Q8IY81 847 aaKnown RBP18.04■□□□□ 0.48
CNOT3-210ENST00000618939 SPAG9O60271 1321 aaKnown RBP18.04■□□□□ 0.48
CNOT3-210ENST00000618939 MAPK8IP3Q9UPT6 1336 aa18.04■□□□□ 0.48
CNOT3-210ENST00000618939 MORC1Q86VD1 984 aa18.03■□□□□ 0.48
CNOT3-210ENST00000618939 MIA2Q96PC5 1412 aa18.03■□□□□ 0.48
CNOT3-210ENST00000618939 POGKQ9P215 609 aa18.03■□□□□ 0.48
CNOT3-210ENST00000618939 KIF3BO15066 747 aa18.03■□□□□ 0.48
CNOT3-210ENST00000618939 PRDM2Q13029 1718 aa18.03■□□□□ 0.48
CNOT3-210ENST00000618939 GGT6Q6P531 493 aa18.02■□□□□ 0.48
CNOT3-210ENST00000618939 ANKRD50Q9ULJ7 1429 aa18.02■□□□□ 0.48
CNOT3-210ENST00000618939 NAIPQ13075 1403 aa18.02■□□□□ 0.47
CNOT3-210ENST00000618939 MYH16Q9H6N6 1097 aa18.02■□□□□ 0.47
CNOT3-210ENST00000618939 TCERG1O14776 1098 aaKnown RBP18■□□□□ 0.47
CNOT3-210ENST00000618939 U2SURPO15042 1029 aaKnown RBP17.99■□□□□ 0.47
CNOT3-210ENST00000618939 PANK3Q9H999 370 aa17.99■□□□□ 0.47
CNOT3-210ENST00000618939 EIF3AQ14152 1382 aaKnown RBP17.98■□□□□ 0.47
CNOT3-210ENST00000618939 ARXQ96QS3 562 aa17.97■□□□□ 0.47
CNOT3-210ENST00000618939 ARID4BQ4LE39 1312 aaPredicted RBP17.97■□□□□ 0.47
CNOT3-210ENST00000618939 NBPF8Q3BBV2 869 aa17.97■□□□□ 0.47
CNOT3-210ENST00000618939 SUPT6HQ7KZ85 1726 aaKnown RBP17.96■□□□□ 0.47
CNOT3-210ENST00000618939 HECW1Q76N89 1606 aa17.95■□□□□ 0.46
CNOT3-210ENST00000618939 SAFB2Q14151 953 aaKnown RBP eCLIP17.95■□□□□ 0.46
CNOT3-210ENST00000618939 ANP32BQ92688 251 aaKnown RBP17.95■□□□□ 0.46
CNOT3-210ENST00000618939 SRPK2P78362 688 aaKnown RBP17.94■□□□□ 0.46
CNOT3-210ENST00000618939 GOLGA2Q08379 1002 aa17.94■□□□□ 0.46
CNOT3-210ENST00000618939 MRC2Q9UBG0 1479 aa17.94■□□□□ 0.46
CNOT3-210ENST00000618939 CUL7Q14999 1698 aa17.93■□□□□ 0.46
CNOT3-210ENST00000618939 MS4A1P11836 297 aa17.93■□□□□ 0.46
CNOT3-210ENST00000618939 EPRSP07814 1512 aaKnown RBP17.92■□□□□ 0.46
CNOT3-210ENST00000618939 EIF5BO60841 1220 aaKnown RBP17.91■□□□□ 0.46
CNOT3-210ENST00000618939 TROQ12816 1431 aaPredicted RBP17.9■□□□□ 0.46
CNOT3-210ENST00000618939 PRG4Q92954 1404 aaPredicted RBP17.9■□□□□ 0.46
CNOT3-210ENST00000618939 DEKP35659 375 aaKnown RBP17.9■□□□□ 0.46
CNOT3-210ENST00000618939 IFT140Q96RY7 1462 aa17.9■□□□□ 0.46
CNOT3-210ENST00000618939 RRP1P56182 461 aaKnown RBP17.9■□□□□ 0.46
CNOT3-210ENST00000618939 DAPK1P53355 1430 aa17.9■□□□□ 0.46
CNOT3-210ENST00000618939 IPO9Q96P70 1041 aaKnown RBP17.9■□□□□ 0.46
CNOT3-210ENST00000618939 CDK13Q14004 1512 aaKnown RBP17.89■□□□□ 0.46
CNOT3-210ENST00000618939 CCDC146Q8IYE0 955 aa17.89■□□□□ 0.45
CNOT3-210ENST00000618939 STK26Q9P289 416 aa17.88■□□□□ 0.45
CNOT3-210ENST00000618939 KIAA1107Q9UPP5 1409 aa17.88■□□□□ 0.45
CNOT3-210ENST00000618939 EXOC6Q8TAG9 804 aa17.88■□□□□ 0.45
CNOT3-210ENST00000618939 PNNQ9H307 717 aaKnown RBP17.87■□□□□ 0.45
CNOT3-210ENST00000618939 LAMC3Q9Y6N6 1575 aa17.87■□□□□ 0.45
CNOT3-210ENST00000618939 FANCIQ9NVI1 1328 aa17.87■□□□□ 0.45
CNOT3-210ENST00000618939 U2AF1L5P0DN76 240 aaPredicted RBP17.87■□□□□ 0.45
CNOT3-210ENST00000618939 U2AF1Q01081 240 aaKnown RBP eCLIP17.87■□□□□ 0.45
CNOT3-210ENST00000618939 IQGAP2Q13576 1575 aa17.84■□□□□ 0.45
CNOT3-210ENST00000618939 PLIN1O60240 522 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms