RNA–Protein interactions for RNA: ENST00000618534.4

NEK3-208, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene NEK3, Length 2,414 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-208ENST00000618534 CCDC7Q96M83 1385 aa28.23■■■□□ 2.11
NEK3-208ENST00000618534 DAPK1P53355 1430 aa28.2■■■□□ 2.11
NEK3-208ENST00000618534 RPRD2Q5VT52 1461 aaKnown RBP28.19■■■□□ 2.1
NEK3-208ENST00000618534 ANKRD30BQ9BXX2 1392 aa28.19■■■□□ 2.1
NEK3-208ENST00000618534 ROCK1Q13464 1354 aa28.17■■■□□ 2.1
NEK3-208ENST00000618534 TEX14Q8IWB6 1497 aa28.17■■■□□ 2.1
NEK3-208ENST00000618534 NBPF8Q3BBV2 869 aa28.17■■■□□ 2.1
NEK3-208ENST00000618534 PRKRIP1Q9H875 184 aaPredicted RBP28.17■■■□□ 2.1
NEK3-208ENST00000618534 DNMT1P26358 1616 aaKnown RBP28.16■■■□□ 2.1
NEK3-208ENST00000618534 ABCC5O15440 1437 aa28.15■■■□□ 2.1
NEK3-208ENST00000618534 ZNF644Q9H582 1327 aaPredicted RBP28.1■■■□□ 2.09
NEK3-208ENST00000618534 FAM9BQ8IZU0 186 aa28.1■■■□□ 2.09
NEK3-208ENST00000618534 MRS2Q9HD23 443 aa28.09■■■□□ 2.09
NEK3-208ENST00000618534 CDK11AQ9UQ88 783 aaPredicted RBP28.09■■■□□ 2.09
NEK3-208ENST00000618534 SPATA31E1Q6ZUB1 1445 aa28.08■■■□□ 2.08
NEK3-208ENST00000618534 MSH5O43196 834 aa28.07■■■□□ 2.08
NEK3-208ENST00000618534 POLR1AO95602 1720 aaPredicted RBP28.07■■■□□ 2.08
NEK3-208ENST00000618534 SLC4A1APQ9BWU0 796 aaKnown RBP28.07■■■□□ 2.08
NEK3-208ENST00000618534 KIAA0556O60303 1618 aa28.06■■■□□ 2.08
NEK3-208ENST00000618534 KIF7Q2M1P5 1343 aa28.06■■■□□ 2.08
NEK3-208ENST00000618534 ERICH6BQ5W0A0 696 aa28.06■■■□□ 2.08
NEK3-208ENST00000618534 NUP153P49790 1475 aaKnown RBP28.06■■■□□ 2.08
NEK3-208ENST00000618534 DISP1Q96F81 1524 aa28.05■■■□□ 2.08
NEK3-208ENST00000618534 ZBED9Q6R2W3 1325 aa28.03■■■□□ 2.08
NEK3-208ENST00000618534 PPP4R2Q9NY27 417 aa28.02■■■□□ 2.08
NEK3-208ENST00000618534 MRC2Q9UBG0 1479 aa28.01■■■□□ 2.07
NEK3-208ENST00000618534 RAPGEF6Q8TEU7 1601 aa28.01■■■□□ 2.07
NEK3-208ENST00000618534 FANCIQ9NVI1 1328 aa28■■■□□ 2.07
NEK3-208ENST00000618534 KIAA0586Q9BVV6 1533 aa27.99■■■□□ 2.07
NEK3-208ENST00000618534 ZNF608Q9ULD9 1512 aaPredicted RBP27.98■■■□□ 2.07
NEK3-208ENST00000618534 PZPP20742 1482 aa27.98■■■□□ 2.07
NEK3-208ENST00000618534 CAMSAP2Q08AD1 1489 aa27.93■■■□□ 2.06
NEK3-208ENST00000618534 MBD5Q9P267 1494 aa27.91■■■□□ 2.06
NEK3-208ENST00000618534 PRG4Q92954 1404 aaPredicted RBP27.91■■■□□ 2.06
NEK3-208ENST00000618534 IFT140Q96RY7 1462 aa27.9■■■□□ 2.06
NEK3-208ENST00000618534 ADGBQ8N7X0 1667 aa27.9■■■□□ 2.06
NEK3-208ENST00000618534 TROQ12816 1431 aaPredicted RBP27.88■■■□□ 2.05
NEK3-208ENST00000618534 B4GALNT3Q6L9W6 998 aa27.88■■■□□ 2.05
NEK3-208ENST00000618534 DHX29Q7Z478 1369 aaKnown RBP27.87■■■□□ 2.05
NEK3-208ENST00000618534 ITSN2Q9NZM3 1697 aa27.86■■■□□ 2.05
NEK3-208ENST00000618534 CFDP1Q9UEE9 299 aaPredicted RBP27.86■■■□□ 2.05
NEK3-208ENST00000618534 BCORL1Q5H9F3 1711 aa27.86■■■□□ 2.05
NEK3-208ENST00000618534 GRIN2AQ12879 1464 aa27.86■■■□□ 2.05
NEK3-208ENST00000618534 KIAA1107Q9UPP5 1409 aa27.85■■■□□ 2.05
NEK3-208ENST00000618534 USP47Q96K76 1375 aa27.84■■■□□ 2.05
NEK3-208ENST00000618534 GPATCH8Q9UKJ3 1502 aaKnown RBP27.83■■■□□ 2.04
NEK3-208ENST00000618534 CROCC2H7BZ55 1655 aa27.82■■■□□ 2.04
NEK3-208ENST00000618534 KIF14Q15058 1648 aa27.82■■■□□ 2.04
NEK3-208ENST00000618534 ZNF326Q5BKZ1 582 aaKnown RBP27.82■■■□□ 2.04
NEK3-208ENST00000618534 ADGRL2O95490 1459 aa27.81■■■□□ 2.04
NEK3-208ENST00000618534 CNGB1Q14028 1251 aaPredicted RBP27.81■■■□□ 2.04
NEK3-208ENST00000618534 POLR3GLQ9BT43 218 aa27.8■■■□□ 2.04
NEK3-208ENST00000618534 ZNF777Q9ULD5 760 aaPredicted RBP27.79■■■□□ 2.04
NEK3-208ENST00000618534 PLB1Q6P1J6 1458 aa27.78■■■□□ 2.04
NEK3-208ENST00000618534 PKD2Q13563 968 aa27.78■■■□□ 2.04
NEK3-208ENST00000618534 KDM5CP41229 1560 aa27.78■■■□□ 2.04
NEK3-208ENST00000618534 SMG6Q86US8 1419 aaKnown RBP27.78■■■□□ 2.04
NEK3-208ENST00000618534 ADCY10Q96PN6 1610 aa27.78■■■□□ 2.04
NEK3-208ENST00000618534 EIF4G3O43432 1585 aaKnown RBP27.77■■■□□ 2.04
NEK3-208ENST00000618534 ERICH6Q7L0X2 663 aa27.77■■■□□ 2.04
NEK3-208ENST00000618534 BCL11AQ9H165 835 aa27.75■■■□□ 2.03
NEK3-208ENST00000618534 ANKRD30AQ9BXX3 1397 aa27.74■■■□□ 2.03
NEK3-208ENST00000618534 ANKRD50Q9ULJ7 1429 aa27.71■■■□□ 2.03
NEK3-208ENST00000618534 NUDCQ9Y266 331 aa27.7■■■□□ 2.02
NEK3-208ENST00000618534 CEP170Q5SW79 1584 aa27.69■■■□□ 2.02
NEK3-208ENST00000618534 ARID4BQ4LE39 1312 aaPredicted RBP27.68■■■□□ 2.02
NEK3-208ENST00000618534 RALGAPBQ86X10 1494 aa27.67■■■□□ 2.02
NEK3-208ENST00000618534 UHRF1BP1Q6BDS2 1440 aa27.67■■■□□ 2.02
NEK3-208ENST00000618534 RNF123Q5XPI4 1314 aa27.63■■■□□ 2.01
NEK3-208ENST00000618534 CDC42BPAQ5VT25 1732 aa27.63■■■□□ 2.01
NEK3-208ENST00000618534 SENP3-EIF4A1A0A087X0R7 540 aa27.62■■■□□ 2.01
NEK3-208ENST00000618534 ROCK2O75116 1388 aaKnown RBP27.62■■■□□ 2.01
NEK3-208ENST00000618534 NUP155O75694 1391 aa27.62■■■□□ 2.01
NEK3-208ENST00000618534 MAGI1Q96QZ7 1491 aaPredicted RBP27.61■■■□□ 2.01
NEK3-208ENST00000618534 PNISRQ8TF01 805 aaKnown RBP27.61■■■□□ 2.01
NEK3-208ENST00000618534 CARD11Q9BXL7 1154 aa27.6■■■□□ 2.01
NEK3-208ENST00000618534 ARHGEF12Q9NZN5 1544 aa27.6■■■□□ 2.01
NEK3-208ENST00000618534 CHMP7Q8WUX9 453 aaPredicted RBP27.6■■■□□ 2.01
NEK3-208ENST00000618534 C9orf84Q5VXU9 1444 aa27.6■■■□□ 2.01
NEK3-208ENST00000618534 SHANK2Q9UPX8 1470 aa27.59■■■□□ 2.01
NEK3-208ENST00000618534 TMC1Q8TDI8 760 aa27.57■■■□□ 2
NEK3-208ENST00000618534 SYNJ2O15056 1496 aa27.57■■■□□ 2
NEK3-208ENST00000618534 CARMIL2Q6F5E8 1435 aa27.57■■■□□ 2
NEK3-208ENST00000618534 ABCC10Q5T3U5 1492 aa27.56■■■□□ 2
NEK3-208ENST00000618534 KDM5DQ9BY66 1539 aa27.55■■■□□ 2
NEK3-208ENST00000618534 KIF15Q9NS87 1388 aa27.55■■■□□ 2
NEK3-208ENST00000618534 CCDC136Q96JN2 1154 aa27.53■■■□□ 2
NEK3-208ENST00000618534 FBLN2P98095 1184 aa27.53■■■□□ 2
NEK3-208ENST00000618534 KDM2AQ9Y2K7 1162 aa27.53■■■□□ 2
NEK3-208ENST00000618534 ST20-MTHFSA0A0A6YYL1 179 aa27.52■■■□□ 2
NEK3-208ENST00000618534 JPH4Q96JJ6 628 aa27.52■■■□□ 2
NEK3-208ENST00000618534 PLEKHD1A6NEE1 506 aa27.51■■■□□ 2
NEK3-208ENST00000618534 LRPPRCP42704 1394 aaKnown RBP27.5■■□□□ 1.99
NEK3-208ENST00000618534 ABCA8O94911 1581 aa27.5■■□□□ 1.99
NEK3-208ENST00000618534 E9PCH4 1651 aa27.48■■□□□ 1.99
NEK3-208ENST00000618534 ATP10BO94823 1461 aa27.48■■□□□ 1.99
NEK3-208ENST00000618534 NUP160Q12769 1436 aa27.48■■□□□ 1.99
NEK3-208ENST00000618534 DCAF11Q8TEB1 546 aa27.47■■□□□ 1.99
NEK3-208ENST00000618534 PTPRGP23470 1445 aa27.46■■□□□ 1.99
NEK3-208ENST00000618534 BRD4O60885 1362 aaPredicted RBP27.46■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms