RNA–Protein interactions for RNA: ENST00000618001.4

TGIF1-223, Transcript of TGFB induced factor homeobox 1, human

TSL 2 BASIC

Gene TGIF1, Length 3,030 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TGIF1-223	ENST00000618001	CDK11A	Q9UQ88	783 aa	Predicted RBP	13.45	□□□□□ -0.26
TGIF1-223	ENST00000618001	CLIP1	P30622	1438 aa		13.44	□□□□□ -0.26
TGIF1-223	ENST00000618001	SCAPER	Q9BY12	1400 aa		13.44	□□□□□ -0.26
TGIF1-223	ENST00000618001	YEATS2	Q9ULM3	1422 aa		13.44	□□□□□ -0.26
TGIF1-223	ENST00000618001	CCDC18	Q5T9S5	1454 aa		13.44	□□□□□ -0.26
TGIF1-223	ENST00000618001	PCF11	O94913	1555 aa	Known RBP	13.44	□□□□□ -0.26
TGIF1-223	ENST00000618001	KDM5C	P41229	1560 aa		13.44	□□□□□ -0.26
TGIF1-223	ENST00000618001	RIMS1	Q86UR5	1692 aa	Known RBP	13.44	□□□□□ -0.26
TGIF1-223	ENST00000618001	CASKIN1	Q8WXD9	1431 aa		13.44	□□□□□ -0.26
TGIF1-223	ENST00000618001	LMTK3	Q96Q04	1460 aa		13.43	□□□□□ -0.26
TGIF1-223	ENST00000618001	ZNF518A	Q6AHZ1	1483 aa		13.42	□□□□□ -0.26
TGIF1-223	ENST00000618001	PREX2	Q70Z35	1606 aa		13.41	□□□□□ -0.26
TGIF1-223	ENST00000618001	RERE	Q9P2R6	1566 aa		13.41	□□□□□ -0.26
TGIF1-223	ENST00000618001	EFCAB2	Q5VUJ9	269 aa		13.41	□□□□□ -0.26
TGIF1-223	ENST00000618001	ARID4B	Q4LE39	1312 aa	Predicted RBP	13.41	□□□□□ -0.26
TGIF1-223	ENST00000618001	ARHGEF12	Q9NZN5	1544 aa		13.41	□□□□□ -0.26
TGIF1-223	ENST00000618001	ATP10A	O60312	1499 aa		13.41	□□□□□ -0.26
TGIF1-223	ENST00000618001	ILDR1	Q86SU0	546 aa	Predicted RBP	13.41	□□□□□ -0.26
TGIF1-223	ENST00000618001	C9orf84	Q5VXU9	1444 aa		13.41	□□□□□ -0.26
TGIF1-223	ENST00000618001	FYCO1	Q9BQS8	1478 aa		13.4	□□□□□ -0.26
TGIF1-223	ENST00000618001	ARHGAP5	Q13017	1502 aa		13.4	□□□□□ -0.26
TGIF1-223	ENST00000618001	CDC42BPB	Q9Y5S2	1711 aa		13.4	□□□□□ -0.26
TGIF1-223	ENST00000618001	FER1L4	A9Z1Z3	1794 aa		13.39	□□□□□ -0.27
TGIF1-223	ENST00000618001	ABCC1	P33527	1531 aa		13.37	□□□□□ -0.27
TGIF1-223	ENST00000618001	MLH3	Q9UHC1	1453 aa		13.36	□□□□□ -0.27
TGIF1-223	ENST00000618001	DIP2C	Q9Y2E4	1556 aa		13.36	□□□□□ -0.27
TGIF1-223	ENST00000618001	ITSN2	Q9NZM3	1697 aa		13.36	□□□□□ -0.27
TGIF1-223	ENST00000618001	ATP1B4	Q9UN42	357 aa	Predicted RBP	13.35	□□□□□ -0.27
TGIF1-223	ENST00000618001	EHMT2	Q96KQ7	1210 aa		13.34	□□□□□ -0.27
TGIF1-223	ENST00000618001	CDC42BPA	Q5VT25	1732 aa		13.34	□□□□□ -0.27
TGIF1-223	ENST00000618001	ABCA6	Q8N139	1617 aa		13.34	□□□□□ -0.27
TGIF1-223	ENST00000618001	AGL	P35573	1532 aa		13.33	□□□□□ -0.27
TGIF1-223	ENST00000618001	PREX1	Q8TCU6	1659 aa		13.31	□□□□□ -0.28
TGIF1-223	ENST00000618001	TRAPPC8	Q9Y2L5	1435 aa		13.29	□□□□□ -0.28
TGIF1-223	ENST00000618001	AFAP1	Q8N556	730 aa		13.29	□□□□□ -0.28
TGIF1-223	ENST00000618001	KIDINS220	Q9ULH0	1771 aa		13.29	□□□□□ -0.28
TGIF1-223	ENST00000618001	SAMD9L	Q8IVG5	1584 aa		13.28	□□□□□ -0.28
TGIF1-223	ENST00000618001	GPATCH8	Q9UKJ3	1502 aa	Known RBP	13.27	□□□□□ -0.28
TGIF1-223	ENST00000618001	FBXO41	Q8TF61	875 aa		13.26	□□□□□ -0.29
TGIF1-223	ENST00000618001	KIAA1107	Q9UPP5	1409 aa		13.26	□□□□□ -0.29
TGIF1-223	ENST00000618001	PLEKHH2	Q8IVE3	1493 aa		13.25	□□□□□ -0.29
TGIF1-223	ENST00000618001	MLEC	Q14165	292 aa		13.25	□□□□□ -0.29
TGIF1-223	ENST00000618001	SYCP2	Q9BX26	1530 aa		13.24	□□□□□ -0.29
TGIF1-223	ENST00000618001	INO80	Q9ULG1	1556 aa	Predicted RBP	13.24	□□□□□ -0.29
TGIF1-223	ENST00000618001	C3	P01024	1663 aa		13.24	□□□□□ -0.29
TGIF1-223	ENST00000618001	MROH2A	A6NES4	1674 aa		13.23	□□□□□ -0.29
TGIF1-223	ENST00000618001	PLXNC1	O60486	1568 aa		13.23	□□□□□ -0.29
TGIF1-223	ENST00000618001	CNTLN	Q9NXG0	1405 aa		13.23	□□□□□ -0.29
TGIF1-223	ENST00000618001	EHBP1L1	Q8N3D4	1523 aa		13.22	□□□□□ -0.29
TGIF1-223	ENST00000618001	ATP7A	Q04656	1500 aa		13.21	□□□□□ -0.3
TGIF1-223	ENST00000618001	UHRF1BP1	Q6BDS2	1440 aa		13.21	□□□□□ -0.3
TGIF1-223	ENST00000618001	HSPA2	P54652	639 aa		13.21	□□□□□ -0.3
TGIF1-223	ENST00000618001	TIAM1	Q13009	1591 aa		13.2	□□□□□ -0.3
TGIF1-223	ENST00000618001	STRC	Q7RTU9	1775 aa		13.19	□□□□□ -0.3
TGIF1-223	ENST00000618001	CEP162	Q5TB80	1403 aa		13.19	□□□□□ -0.3
TGIF1-223	ENST00000618001	CCNB3	Q8WWL7	1395 aa		13.19	□□□□□ -0.3
TGIF1-223	ENST00000618001	SETD1B	Q9UPS6	1966 aa	Known RBP	13.18	□□□□□ -0.3
TGIF1-223	ENST00000618001	NPAT	Q14207	1427 aa		13.18	□□□□□ -0.3
TGIF1-223	ENST00000618001	MTUS2	Q5JR59	1369 aa		13.18	□□□□□ -0.3
TGIF1-223	ENST00000618001	ADGB	Q8N7X0	1667 aa		13.17	□□□□□ -0.3
TGIF1-223	ENST00000618001	CEBPA	P49715	358 aa	Predicted RBP	13.17	□□□□□ -0.3
TGIF1-223	ENST00000618001	MYT1L	Q9UL68	1186 aa		13.17	□□□□□ -0.3
TGIF1-223	ENST00000618001	SPAG9	O60271	1321 aa	Known RBP	13.16	□□□□□ -0.3
TGIF1-223	ENST00000618001	MBD5	Q9P267	1494 aa		13.16	□□□□□ -0.3
TGIF1-223	ENST00000618001	PLPPR3	Q6T4P5	718 aa		13.15	□□□□□ -0.3
TGIF1-223	ENST00000618001	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.15	□□□□□ -0.3
TGIF1-223	ENST00000618001	A2M	P01023	1474 aa		13.15	□□□□□ -0.3
TGIF1-223	ENST00000618001	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.15	□□□□□ -0.3
TGIF1-223	ENST00000618001	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.14	□□□□□ -0.31
TGIF1-223	ENST00000618001	PTPRT	O14522	1441 aa		13.14	□□□□□ -0.31
TGIF1-223	ENST00000618001	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.13	□□□□□ -0.31	3e-7	■□□□□ 10.2
TGIF1-223	ENST00000618001	DMRT2	Q9Y5R5	561 aa		13.13	□□□□□ -0.31
TGIF1-223	ENST00000618001	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.13	□□□□□ -0.31
TGIF1-223	ENST00000618001	ZNF142	P52746	1687 aa	Predicted RBP	13.13	□□□□□ -0.31
TGIF1-223	ENST00000618001	FAM135A	Q9P2D6	1515 aa		13.12	□□□□□ -0.31
TGIF1-223	ENST00000618001	ESF1	Q9H501	851 aa	Known RBP	13.12	□□□□□ -0.31
TGIF1-223	ENST00000618001	CLTC	Q00610	1675 aa	Known RBP	13.11	□□□□□ -0.31
TGIF1-223	ENST00000618001	CERK	Q8TCT0	537 aa		13.11	□□□□□ -0.31
TGIF1-223	ENST00000618001	NCOA1	Q15788	1441 aa		13.11	□□□□□ -0.31
TGIF1-223	ENST00000618001	PPP6R1	Q9UPN7	881 aa		13.11	□□□□□ -0.31
TGIF1-223	ENST00000618001	ZMYM3	Q14202	1370 aa		13.1	□□□□□ -0.31
TGIF1-223	ENST00000618001	MYO3A	Q8NEV4	1616 aa		13.1	□□□□□ -0.31
TGIF1-223	ENST00000618001	NCOA2	Q15596	1464 aa		13.09	□□□□□ -0.31
TGIF1-223	ENST00000618001	ARHGEF5	Q12774	1597 aa		13.09	□□□□□ -0.31
TGIF1-223	ENST00000618001	CCDC141	Q6ZP82	1450 aa		13.09	□□□□□ -0.31
TGIF1-223	ENST00000618001	PTPRK	Q15262	1439 aa		13.08	□□□□□ -0.32
TGIF1-223	ENST00000618001	CAMSAP2	Q08AD1	1489 aa		13.08	□□□□□ -0.32
TGIF1-223	ENST00000618001	MAP3K1	Q13233	1512 aa		13.08	□□□□□ -0.32
TGIF1-223	ENST00000618001	IQSEC2	Q5JU85	1478 aa		13.08	□□□□□ -0.32
TGIF1-223	ENST00000618001	PLA2R1	Q13018	1463 aa		13.07	□□□□□ -0.32
TGIF1-223	ENST00000618001	DHX29	Q7Z478	1369 aa	Known RBP	13.07	□□□□□ -0.32
TGIF1-223	ENST00000618001	ZNF644	Q9H582	1327 aa	Predicted RBP	13.06	□□□□□ -0.32
TGIF1-223	ENST00000618001	VPS8	Q8N3P4	1428 aa		13.06	□□□□□ -0.32
TGIF1-223	ENST00000618001	CAMSAP1	Q5T5Y3	1602 aa		13.06	□□□□□ -0.32
TGIF1-223	ENST00000618001	LTBP4	Q8N2S1	1624 aa		13.06	□□□□□ -0.32
TGIF1-223	ENST00000618001	RSPH4A	Q5TD94	716 aa		13.06	□□□□□ -0.32
TGIF1-223	ENST00000618001	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.05	□□□□□ -0.32
TGIF1-223	ENST00000618001	LRRC9	Q6ZRR7	1453 aa		13.04	□□□□□ -0.32
TGIF1-223	ENST00000618001	MAST1	Q9Y2H9	1570 aa		13.04	□□□□□ -0.32
TGIF1-223	ENST00000618001	KDM5D	Q9BY66	1539 aa		13.04	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms