RNA–Protein interactions for RNA: ENST00000613459.4

HMGXB3-206, Transcript of HMG-box containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HMGXB3, Length 5,567 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-206ENST00000613459 SENP3-EIF4A1A0A087X0R7 540 aa22.11■■□□□ 1.13
HMGXB3-206ENST00000613459 PLEKHG5O94827 1062 aa22.11■■□□□ 1.13
HMGXB3-206ENST00000613459 VPS8Q8N3P4 1428 aa22.11■■□□□ 1.13
HMGXB3-206ENST00000613459 RALBP1Q15311 655 aa22.1■■□□□ 1.13
HMGXB3-206ENST00000613459 CECR2Q9BXF3 1484 aa22.09■■□□□ 1.13
HMGXB3-206ENST00000613459 GOLGA2Q08379 1002 aa22.09■■□□□ 1.13
HMGXB3-206ENST00000613459 ERCC6Q03468 1493 aa22.08■■□□□ 1.12
HMGXB3-206ENST00000613459 GBP4Q96PP9 640 aa22.07■■□□□ 1.12
HMGXB3-206ENST00000613459 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.07■■□□□ 1.12
HMGXB3-206ENST00000613459 SOGA1O94964 1423 aa22.05■■□□□ 1.12
HMGXB3-206ENST00000613459 CUX2O14529 1486 aa22.05■■□□□ 1.12
HMGXB3-206ENST00000613459 TCERG1O14776 1098 aaKnown RBP22.05■■□□□ 1.12
HMGXB3-206ENST00000613459 HDGFL2Q7Z4V5 671 aaPredicted RBP22.05■■□□□ 1.12
HMGXB3-206ENST00000613459 NPHP1O15259 732 aa22.04■■□□□ 1.12
HMGXB3-206ENST00000613459 DRC7Q8IY82 874 aa22.04■■□□□ 1.12
HMGXB3-206ENST00000613459 HTATSF1O43719 755 aaKnown RBP22.04■■□□□ 1.12
HMGXB3-206ENST00000613459 RTF1Q92541 710 aaKnown RBP22.04■■□□□ 1.12
HMGXB3-206ENST00000613459 HSPA5P11021 654 aaKnown RBP22.04■■□□□ 1.12
HMGXB3-206ENST00000613459 RWDD1Q9H446 243 aaPredicted RBP22.04■■□□□ 1.12
HMGXB3-206ENST00000613459 SRPK2P78362 688 aaKnown RBP22.03■■□□□ 1.12
HMGXB3-206ENST00000613459 EIF4G1Q04637 1599 aaKnown RBP22.02■■□□□ 1.12
HMGXB3-206ENST00000613459 LMOD2Q6P5Q4 547 aa22.02■■□□□ 1.12
HMGXB3-206ENST00000613459 EIF3AQ14152 1382 aaKnown RBP22.01■■□□□ 1.11
HMGXB3-206ENST00000613459 NAP1L2Q9ULW6 460 aaPredicted RBP22.01■■□□□ 1.11
HMGXB3-206ENST00000613459 CARMIL2Q6F5E8 1435 aa22■■□□□ 1.11
HMGXB3-206ENST00000613459 KIAA1211Q6ZU35 1233 aa21.99■■□□□ 1.11
HMGXB3-206ENST00000613459 HDAC5Q9UQL6 1122 aa21.99■■□□□ 1.11
HMGXB3-206ENST00000613459 SYAP1Q96A49 352 aaPredicted RBP21.98■■□□□ 1.11
HMGXB3-206ENST00000613459 FMN1Q68DA7 1419 aa21.98■■□□□ 1.11
HMGXB3-206ENST00000613459 PMFBP1Q8TBY8 1022 aa21.98■■□□□ 1.11
HMGXB3-206ENST00000613459 KIAA2012Q0VF49 1180 aa21.97■■□□□ 1.11
HMGXB3-206ENST00000613459 RCAN3Q9UKA8 241 aa21.96■■□□□ 1.11
HMGXB3-206ENST00000613459 ROCK2O75116 1388 aaKnown RBP21.94■■□□□ 1.1
HMGXB3-206ENST00000613459 TULP1O00294 542 aaPredicted RBP21.93■■□□□ 1.1
HMGXB3-206ENST00000613459 PKD2Q13563 968 aa21.93■■□□□ 1.1
HMGXB3-206ENST00000613459 ANKRD30AQ9BXX3 1397 aa21.93■■□□□ 1.1
HMGXB3-206ENST00000613459 PDE3BQ13370 1112 aa21.93■■□□□ 1.1
HMGXB3-206ENST00000613459 SPRYD3Q8NCJ5 442 aa21.93■■□□□ 1.1
HMGXB3-206ENST00000613459 PHLDB1Q86UU1 1377 aa21.91■■□□□ 1.1
HMGXB3-206ENST00000613459 GNL2Q13823 731 aaKnown RBP21.9■■□□□ 1.1
HMGXB3-206ENST00000613459 TAOK2Q9UL54 1235 aa21.89■■□□□ 1.09
HMGXB3-206ENST00000613459 CSPP1Q1MSJ5 1256 aa21.88■■□□□ 1.09
HMGXB3-206ENST00000613459 CCDC34Q96HJ3 373 aa21.88■■□□□ 1.09
HMGXB3-206ENST00000613459 GOLGA6L3A6NEY3 463 aa21.87■■□□□ 1.09
HMGXB3-206ENST00000613459 TPM4P67936 248 aa21.87■■□□□ 1.09
HMGXB3-206ENST00000613459 HMMRO75330 724 aa21.86■■□□□ 1.09
HMGXB3-206ENST00000613459 CCDC88BA6NC98 1476 aa21.86■■□□□ 1.09
HMGXB3-206ENST00000613459 GPATCH3Q96I76 525 aa21.85■■□□□ 1.09
HMGXB3-206ENST00000613459 MPHOSPH9Q99550 1183 aa21.84■■□□□ 1.09
HMGXB3-206ENST00000613459 RSPH4AQ5TD94 716 aa21.84■■□□□ 1.09
HMGXB3-206ENST00000613459 IPO9Q96P70 1041 aaKnown RBP21.84■■□□□ 1.09
HMGXB3-206ENST00000613459 RAB3GAP2Q9H2M9 1393 aa21.83■■□□□ 1.09
HMGXB3-206ENST00000613459 SPAG9O60271 1321 aaKnown RBP21.83■■□□□ 1.09
HMGXB3-206ENST00000613459 U2AF1L5P0DN76 240 aaPredicted RBP21.83■■□□□ 1.09
HMGXB3-206ENST00000613459 U2AF1Q01081 240 aaKnown RBP eCLIP21.83■■□□□ 1.097e-7■□□□□ 9.7
HMGXB3-206ENST00000613459 ITPRIPQ8IWB1 547 aa21.83■■□□□ 1.09
HMGXB3-206ENST00000613459 LMOD3Q0VAK6 560 aa21.83■■□□□ 1.08
HMGXB3-206ENST00000613459 MROH2BQ7Z745 1585 aa21.82■■□□□ 1.08
HMGXB3-206ENST00000613459 KANK4Q5T7N3 995 aaPredicted RBP21.82■■□□□ 1.08
HMGXB3-206ENST00000613459 EFCAB2Q5VUJ9 269 aa21.82■■□□□ 1.08
HMGXB3-206ENST00000613459 SMARCA2P51531 1590 aa21.81■■□□□ 1.08
HMGXB3-206ENST00000613459 STK31Q9BXU1 1019 aa21.81■■□□□ 1.08
HMGXB3-206ENST00000613459 NUP155O75694 1391 aa21.81■■□□□ 1.08
HMGXB3-206ENST00000613459 TERF2IPQ9NYB0 399 aa21.8■■□□□ 1.08
HMGXB3-206ENST00000613459 ABCC8Q09428 1581 aa21.79■■□□□ 1.08
HMGXB3-206ENST00000613459 NLRP13Q86W25 1043 aa21.78■■□□□ 1.08
HMGXB3-206ENST00000613459 PDS5BQ9NTI5 1447 aa21.77■■□□□ 1.08
HMGXB3-206ENST00000613459 USP35Q9P2H5 1018 aa21.77■■□□□ 1.07
HMGXB3-206ENST00000613459 GZF1Q9H116 711 aaPredicted RBP21.76■■□□□ 1.07
HMGXB3-206ENST00000613459 TNNT3P45378 269 aaPredicted RBP21.75■■□□□ 1.07
HMGXB3-206ENST00000613459 SLKQ9H2G2 1235 aaPredicted RBP21.75■■□□□ 1.07
HMGXB3-206ENST00000613459 AMER1Q5JTC6 1135 aaPredicted RBP21.75■■□□□ 1.07
HMGXB3-206ENST00000613459 PHF14O94880 888 aa21.74■■□□□ 1.07
HMGXB3-206ENST00000613459 CHMP4CQ96CF2 233 aa21.73■■□□□ 1.07
HMGXB3-206ENST00000613459 GGT6Q6P531 493 aa21.72■■□□□ 1.07
HMGXB3-206ENST00000613459 KIF3AQ9Y496 699 aa21.72■■□□□ 1.07
HMGXB3-206ENST00000613459 SMC4Q9NTJ3 1288 aa21.72■■□□□ 1.07
HMGXB3-206ENST00000613459 CENPJQ9HC77 1338 aaPredicted RBP21.71■■□□□ 1.07
HMGXB3-206ENST00000613459 CCDC18Q5T9S5 1454 aa21.71■■□□□ 1.07
HMGXB3-206ENST00000613459 KIF15Q9NS87 1388 aa21.71■■□□□ 1.07
HMGXB3-206ENST00000613459 GOLGA6L1Q8N7Z2 621 aa21.71■■□□□ 1.07
HMGXB3-206ENST00000613459 SAFB2Q14151 953 aaKnown RBP eCLIP21.7■■□□□ 1.06
HMGXB3-206ENST00000613459 STK26Q9P289 416 aa21.7■■□□□ 1.06
HMGXB3-206ENST00000613459 SOX12O15370 315 aa21.7■■□□□ 1.06
HMGXB3-206ENST00000613459 FANCIQ9NVI1 1328 aa21.69■■□□□ 1.06
HMGXB3-206ENST00000613459 NOC3LQ8WTT2 800 aaKnown RBP21.68■■□□□ 1.06
HMGXB3-206ENST00000613459 RSPH6AQ9H0K4 717 aa21.68■■□□□ 1.06
HMGXB3-206ENST00000613459 APBB1O00213 710 aa21.67■■□□□ 1.06
HMGXB3-206ENST00000613459 ST18O60284 1047 aa21.67■■□□□ 1.06
HMGXB3-206ENST00000613459 FOXD1Q16676 465 aa21.67■■□□□ 1.06
HMGXB3-206ENST00000613459 CLSTN1O94985 981 aa21.67■■□□□ 1.06
HMGXB3-206ENST00000613459 MFAP1P55081 439 aaKnown RBP21.67■■□□□ 1.06
HMGXB3-206ENST00000613459 DDX11L8A8MPP1 907 aa21.66■■□□□ 1.06
HMGXB3-206ENST00000613459 PRKCSHP14314 528 aaPredicted RBP21.66■■□□□ 1.06
HMGXB3-206ENST00000613459 UACAQ9BZF9 1416 aa21.65■■□□□ 1.06
HMGXB3-206ENST00000613459 GORABQ5T7V8 394 aa21.65■■□□□ 1.06
HMGXB3-206ENST00000613459 ISY1Q9ULR0 285 aaKnown RBP21.65■■□□□ 1.06
HMGXB3-206ENST00000613459 MLECQ14165 292 aa21.65■■□□□ 1.06
HMGXB3-206ENST00000613459 MYBBP1AQ9BQG0 1328 aaKnown RBP21.64■■□□□ 1.05
HMGXB3-206ENST00000613459 CSB-PGBD3P0DP91 1061 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms