RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 ITSN2Q9NZM3 1697 aa19.58■□□□□ 0.73
NEK3-205ENST00000610828 PPP1R15AO75807 674 aaPredicted RBP19.58■□□□□ 0.72
NEK3-205ENST00000610828 PLEKHD1A6NEE1 506 aa19.57■□□□□ 0.72
NEK3-205ENST00000610828 GPATCH8Q9UKJ3 1502 aaKnown RBP19.57■□□□□ 0.72
NEK3-205ENST00000610828 YTHDC1Q96MU7 727 aaKnown RBP19.57■□□□□ 0.72
NEK3-205ENST00000610828 ATP10BO94823 1461 aa19.56■□□□□ 0.72
NEK3-205ENST00000610828 PTPRGP23470 1445 aa19.56■□□□□ 0.72
NEK3-205ENST00000610828 ROCK1Q13464 1354 aa19.56■□□□□ 0.72
NEK3-205ENST00000610828 SCAF1Q9H7N4 1312 aaKnown RBP19.56■□□□□ 0.72
NEK3-205ENST00000610828 CAMSAP2Q08AD1 1489 aa19.56■□□□□ 0.72
NEK3-205ENST00000610828 ZNF777Q9ULD5 760 aaPredicted RBP19.55■□□□□ 0.72
NEK3-205ENST00000610828 DENND4BO75064 1496 aaPredicted RBP19.51■□□□□ 0.71
NEK3-205ENST00000610828 MPHOSPH9Q99550 1183 aa19.5■□□□□ 0.71
NEK3-205ENST00000610828 SHROOM2Q13796 1616 aa19.47■□□□□ 0.71
NEK3-205ENST00000610828 ABCC10Q5T3U5 1492 aa19.47■□□□□ 0.71
NEK3-205ENST00000610828 CDC42BPAQ5VT25 1732 aa19.47■□□□□ 0.71
NEK3-205ENST00000610828 NCOA1Q15788 1441 aa19.43■□□□□ 0.7
NEK3-205ENST00000610828 FOXD1Q16676 465 aa19.43■□□□□ 0.7
NEK3-205ENST00000610828 ADGBQ8N7X0 1667 aa19.43■□□□□ 0.7
NEK3-205ENST00000610828 HIRIP3Q9BW71 556 aaPredicted RBP19.43■□□□□ 0.7
NEK3-205ENST00000610828 CROCC2H7BZ55 1655 aa19.43■□□□□ 0.7
NEK3-205ENST00000610828 ERCC6L2Q5T890 1561 aa19.41■□□□□ 0.7
NEK3-205ENST00000610828 KDM5BQ9UGL1 1544 aa19.4■□□□□ 0.7
NEK3-205ENST00000610828 ADGRL2O95490 1459 aa19.4■□□□□ 0.7
NEK3-205ENST00000610828 SLC4A1APQ9BWU0 796 aaKnown RBP19.4■□□□□ 0.7
NEK3-205ENST00000610828 ANKRD30AQ9BXX3 1397 aa19.38■□□□□ 0.69
NEK3-205ENST00000610828 DDX10Q13206 875 aaKnown RBP19.38■□□□□ 0.69
NEK3-205ENST00000610828 ANKRD30BQ9BXX2 1392 aa19.35■□□□□ 0.69
NEK3-205ENST00000610828 GTF3C3Q9Y5Q9 886 aa19.35■□□□□ 0.69
NEK3-205ENST00000610828 ABCC2Q92887 1545 aa19.34■□□□□ 0.69
NEK3-205ENST00000610828 C9orf84Q5VXU9 1444 aa19.34■□□□□ 0.69
NEK3-205ENST00000610828 SHANK2Q9UPX8 1470 aa19.33■□□□□ 0.69
NEK3-205ENST00000610828 TSPY4P0CV99 314 aa19.33■□□□□ 0.69
NEK3-205ENST00000610828 TSPY10P0CW01 314 aa19.33■□□□□ 0.69
NEK3-205ENST00000610828 CLASP1Q7Z460 1538 aa19.33■□□□□ 0.69
NEK3-205ENST00000610828 HNRNPMP52272 730 aaKnown RBP eCLIP19.33■□□□□ 0.68
NEK3-205ENST00000610828 ANKRD50Q9ULJ7 1429 aa19.32■□□□□ 0.68
NEK3-205ENST00000610828 PZPP20742 1482 aa19.32■□□□□ 0.68
NEK3-205ENST00000610828 L3MBTL2Q969R5 705 aa19.31■□□□□ 0.68
NEK3-205ENST00000610828 PREX2Q70Z35 1606 aa19.31■□□□□ 0.68
NEK3-205ENST00000610828 CDC42BPBQ9Y5S2 1711 aa19.31■□□□□ 0.68
NEK3-205ENST00000610828 RPRD2Q5VT52 1461 aaKnown RBP19.3■□□□□ 0.68
NEK3-205ENST00000610828 SAMD9LQ8IVG5 1584 aa19.29■□□□□ 0.68
NEK3-205ENST00000610828 ARHGEF5Q12774 1597 aa19.28■□□□□ 0.68
NEK3-205ENST00000610828 MBD5Q9P267 1494 aa19.28■□□□□ 0.68
NEK3-205ENST00000610828 TTC37Q6PGP7 1564 aa19.27■□□□□ 0.68
NEK3-205ENST00000610828 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.26■□□□□ 0.67
NEK3-205ENST00000610828 ARHGAP5Q13017 1502 aa19.25■□□□□ 0.67
NEK3-205ENST00000610828 CCDC141Q6ZP82 1450 aa19.25■□□□□ 0.67
NEK3-205ENST00000610828 KCNH8Q96L42 1107 aa19.25■□□□□ 0.67
NEK3-205ENST00000610828 KIF15Q9NS87 1388 aa19.24■□□□□ 0.67
NEK3-205ENST00000610828 PKD2Q13563 968 aa19.24■□□□□ 0.67
NEK3-205ENST00000610828 KIAA1107Q9UPP5 1409 aa19.23■□□□□ 0.67
NEK3-205ENST00000610828 TEX14Q8IWB6 1497 aa19.23■□□□□ 0.67
NEK3-205ENST00000610828 NUP155O75694 1391 aa19.23■□□□□ 0.67
NEK3-205ENST00000610828 RSPH4AQ5TD94 716 aa19.22■□□□□ 0.67
NEK3-205ENST00000610828 ZCCHC11Q5TAX3 1644 aaKnown RBP19.22■□□□□ 0.67
NEK3-205ENST00000610828 SYCP2Q9BX26 1530 aa19.21■□□□□ 0.67
NEK3-205ENST00000610828 HSPA5P11021 654 aaKnown RBP19.21■□□□□ 0.67
NEK3-205ENST00000610828 MYO5CQ9NQX4 1742 aa19.2■□□□□ 0.66
NEK3-205ENST00000610828 UHRF1BP1LA0JNW5 1464 aa19.2■□□□□ 0.66
NEK3-205ENST00000610828 EIF4G2P78344 907 aaKnown RBP eCLIP19.2■□□□□ 0.66
NEK3-205ENST00000610828 NBPF8Q3BBV2 869 aa19.18■□□□□ 0.66
NEK3-205ENST00000610828 ANP32CO43423 234 aa19.16■□□□□ 0.66
NEK3-205ENST00000610828 KDM5DQ9BY66 1539 aa19.15■□□□□ 0.66
NEK3-205ENST00000610828 PLEKHH2Q8IVE3 1493 aa19.13■□□□□ 0.65
NEK3-205ENST00000610828 PLCH2O75038 1416 aa19.12■□□□□ 0.65
NEK3-205ENST00000610828 WASHC2AQ641Q2 1341 aa19.12■□□□□ 0.65
NEK3-205ENST00000610828 MAST1Q9Y2H9 1570 aa19.12■□□□□ 0.65
NEK3-205ENST00000610828 EFCAB2Q5VUJ9 269 aa19.1■□□□□ 0.65
NEK3-205ENST00000610828 ARHGEF12Q9NZN5 1544 aa19.08■□□□□ 0.65
NEK3-205ENST00000610828 CCER2I3L3R5 266 aa19.07■□□□□ 0.64
NEK3-205ENST00000610828 ZNF326Q5BKZ1 582 aaKnown RBP19.07■□□□□ 0.64
NEK3-205ENST00000610828 FAM135AQ9P2D6 1515 aa19.07■□□□□ 0.64
NEK3-205ENST00000610828 PLXNC1O60486 1568 aa19.06■□□□□ 0.64
NEK3-205ENST00000610828 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.04■□□□□ 0.647e-6■■■□□ 15
NEK3-205ENST00000610828 ABCC1P33527 1531 aa19.04■□□□□ 0.64
NEK3-205ENST00000610828 SPATA31E1Q6ZUB1 1445 aa19.03■□□□□ 0.64
NEK3-205ENST00000610828 C11orf95C9JLR9 678 aaPredicted RBP19.03■□□□□ 0.64
NEK3-205ENST00000610828 WDR7Q9Y4E6 1490 aa19.02■□□□□ 0.64
NEK3-205ENST00000610828 UNC13BO14795 1591 aa19.02■□□□□ 0.63
NEK3-205ENST00000610828 CCDC7Q96M83 1385 aa19.01■□□□□ 0.63
NEK3-205ENST00000610828 DUOX2Q9NRD8 1548 aa19.01■□□□□ 0.63
NEK3-205ENST00000610828 TRAPPC8Q9Y2L5 1435 aa19.01■□□□□ 0.63
NEK3-205ENST00000610828 CNTLNQ9NXG0 1405 aa18.98■□□□□ 0.63
NEK3-205ENST00000610828 OSCARQ8IYS5 282 aa18.98■□□□□ 0.63
NEK3-205ENST00000610828 ARAP3Q8WWN8 1544 aa18.98■□□□□ 0.63
NEK3-205ENST00000610828 ERBINQ96RT1 1412 aa18.97■□□□□ 0.63
NEK3-205ENST00000610828 KDM2AQ9Y2K7 1162 aa18.97■□□□□ 0.63
NEK3-205ENST00000610828 UHRF1BP1Q6BDS2 1440 aa18.96■□□□□ 0.63
NEK3-205ENST00000610828 USP47Q96K76 1375 aa18.96■□□□□ 0.63
NEK3-205ENST00000610828 CCDC144AA2RUR9 1427 aa18.96■□□□□ 0.63
NEK3-205ENST00000610828 IQGAP3Q86VI3 1631 aa18.95■□□□□ 0.62
NEK3-205ENST00000610828 KIF7Q2M1P5 1343 aa18.95■□□□□ 0.62
NEK3-205ENST00000610828 AFAP1Q8N556 730 aa18.95■□□□□ 0.62
NEK3-205ENST00000610828 DCAF11Q8TEB1 546 aa18.95■□□□□ 0.62
NEK3-205ENST00000610828 SPAG9O60271 1321 aaKnown RBP18.95■□□□□ 0.62
NEK3-205ENST00000610828 POLR1AO95602 1720 aaPredicted RBP18.94■□□□□ 0.62
NEK3-205ENST00000610828 FANCAO15360 1455 aa18.93■□□□□ 0.62
NEK3-205ENST00000610828 RALGAPBQ86X10 1494 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms