RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 RIOK3O14730 519 aaKnown RBP12.41□□□□□ -0.42
SMCHD1-213ENST00000609587 SOX12O15370 315 aa12.41□□□□□ -0.42
SMCHD1-213ENST00000609587 ZFP91Q96JP5 570 aaPredicted RBP12.41□□□□□ -0.42
SMCHD1-213ENST00000609587 PHF8Q9UPP1 1060 aa12.41□□□□□ -0.42
SMCHD1-213ENST00000609587 ARSIQ5FYB1 569 aa12.35□□□□□ -0.43
SMCHD1-213ENST00000609587 VGFO15240 615 aaPredicted RBP12.34□□□□□ -0.43
SMCHD1-213ENST00000609587 KHSRPQ92945 711 aaKnown RBP eCLIP12.33□□□□□ -0.442e-13■■■□□ 18.1
SMCHD1-213ENST00000609587 PTGER2P43116 358 aa12.31□□□□□ -0.44
SMCHD1-213ENST00000609587 ZNF316A6NFI3 1004 aaPredicted RBP12.28□□□□□ -0.44
SMCHD1-213ENST00000609587 FBXO22Q8NEZ5 403 aa12.28□□□□□ -0.44
SMCHD1-213ENST00000609587 ANKRD13DQ6ZTN6 518 aa12.26□□□□□ -0.45
SMCHD1-213ENST00000609587 LSM11P83369 360 aaKnown RBP eCLIP12.25□□□□□ -0.45
SMCHD1-213ENST00000609587 NLRP6P59044 892 aa12.24□□□□□ -0.45
SMCHD1-213ENST00000609587 BCL11BQ9C0K0 894 aaPredicted RBP12.22□□□□□ -0.45
SMCHD1-213ENST00000609587 KIF3CO14782 793 aa12.21□□□□□ -0.45
SMCHD1-213ENST00000609587 MFRPQ9BY79 579 aa12.2□□□□□ -0.46
SMCHD1-213ENST00000609587 C2orf72A6NCS6 295 aa12.18□□□□□ -0.46
SMCHD1-213ENST00000609587 NUDT7P0C024 238 aa12.17□□□□□ -0.46
SMCHD1-213ENST00000609587 POTEEQ6S8J3 1075 aa12.17□□□□□ -0.46
SMCHD1-213ENST00000609587 PBX2P40425 430 aa12.14□□□□□ -0.47
SMCHD1-213ENST00000609587 STK24Q9Y6E0 443 aa12.14□□□□□ -0.47
SMCHD1-213ENST00000609587 LHX6Q9UPM6 363 aa12.12□□□□□ -0.47
SMCHD1-213ENST00000609587 AXIN2Q9Y2T1 843 aa12.12□□□□□ -0.47
SMCHD1-213ENST00000609587 PCDHGA4Q9Y5G9 962 aa12.1□□□□□ -0.47
SMCHD1-213ENST00000609587 SLC34A2O95436 690 aa12.08□□□□□ -0.48
SMCHD1-213ENST00000609587 STK25O00506 426 aa12.07□□□□□ -0.48
SMCHD1-213ENST00000609587 TAOK2Q9UL54 1235 aa12.07□□□□□ -0.48
SMCHD1-213ENST00000609587 PLA2G2EQ9NZK7 142 aa12.02□□□□□ -0.49
SMCHD1-213ENST00000609587 ADGRD1Q6QNK2 874 aa12□□□□□ -0.49
SMCHD1-213ENST00000609587 TMC2Q8TDI7 906 aa12□□□□□ -0.49
SMCHD1-213ENST00000609587 HCSTQ9UBK5 93 aa11.99□□□□□ -0.49
SMCHD1-213ENST00000609587 KDM4FA0A1W2PPD8 638 aa11.97□□□□□ -0.49
SMCHD1-213ENST00000609587 ARHGAP33O14559 1287 aa11.96□□□□□ -0.49
SMCHD1-213ENST00000609587 PPP1R37O75864 691 aa11.95□□□□□ -0.5
SMCHD1-213ENST00000609587 ECM2O94769 699 aaPredicted RBP11.94□□□□□ -0.5
SMCHD1-213ENST00000609587 RGL2O15211 777 aa11.93□□□□□ -0.5
SMCHD1-213ENST00000609587 DMRTA1Q5VZB9 504 aa11.93□□□□□ -0.5
SMCHD1-213ENST00000609587 PSDA5PKW4 1024 aaPredicted RBP11.92□□□□□ -0.5
SMCHD1-213ENST00000609587 HRO43593 1189 aa11.92□□□□□ -0.5
SMCHD1-213ENST00000609587 PSEN2P49810 448 aa11.91□□□□□ -0.5
SMCHD1-213ENST00000609587 TK2O00142 265 aa11.9□□□□□ -0.5
SMCHD1-213ENST00000609587 PTCD2Q8WV60 388 aaKnown RBP11.89□□□□□ -0.51
SMCHD1-213ENST00000609587 PKD2Q13563 968 aa11.87□□□□□ -0.51
SMCHD1-213ENST00000609587 FOXK1P85037 733 aa11.83□□□□□ -0.52
SMCHD1-213ENST00000609587 KCTD12Q96CX2 325 aaKnown RBP11.83□□□□□ -0.52
SMCHD1-213ENST00000609587 PPP4R3BQ5MIZ7 849 aa11.82□□□□□ -0.52
SMCHD1-213ENST00000609587 PLPP6Q8IY26 295 aa11.81□□□□□ -0.52
SMCHD1-213ENST00000609587 DSG2Q14126 1118 aa11.78□□□□□ -0.52
SMCHD1-213ENST00000609587 KCNK17Q96T54 332 aa11.78□□□□□ -0.52
SMCHD1-213ENST00000609587 GPHNQ9NQX3 736 aaPredicted RBP11.77□□□□□ -0.53
SMCHD1-213ENST00000609587 VPS9D1Q9Y2B5 631 aa11.72□□□□□ -0.53
SMCHD1-213ENST00000609587 TBC1D12O60347 775 aa11.69□□□□□ -0.54
SMCHD1-213ENST00000609587 OXER1Q8TDS5 423 aa11.68□□□□□ -0.54
SMCHD1-213ENST00000609587 KCNH8Q96L42 1107 aa11.68□□□□□ -0.54
SMCHD1-213ENST00000609587 STAC3Q96MF2 364 aa11.68□□□□□ -0.54
SMCHD1-213ENST00000609587 PTPN5P54829 565 aa11.67□□□□□ -0.54
SMCHD1-213ENST00000609587 HS6ST3Q8IZP7 471 aa11.67□□□□□ -0.54
SMCHD1-213ENST00000609587 UPF1Q92900 1129 aaKnown RBP eCLIP11.66□□□□□ -0.54
SMCHD1-213ENST00000609587 ZNF454Q8N9F8 522 aa11.65□□□□□ -0.54
SMCHD1-213ENST00000609587 BCL2L12Q9HB09 334 aa11.65□□□□□ -0.54
SMCHD1-213ENST00000609587 THSD4Q6ZMP0 1018 aa11.63□□□□□ -0.55
SMCHD1-213ENST00000609587 SLC4A5Q9BY07 1137 aa11.63□□□□□ -0.55
SMCHD1-213ENST00000609587 IFFO2Q5TF58 517 aa11.62□□□□□ -0.55
SMCHD1-213ENST00000609587 BHMG1C9JSJ3 638 aaPredicted RBP11.61□□□□□ -0.55
SMCHD1-213ENST00000609587 FOSBP53539 338 aa11.6□□□□□ -0.55
SMCHD1-213ENST00000609587 CRISPLD2Q9H0B8 497 aa11.6□□□□□ -0.55
SMCHD1-213ENST00000609587 ZBED2Q9BTP6 218 aa11.59□□□□□ -0.55
SMCHD1-213ENST00000609587 A0A0G2JS52 829 aa11.58□□□□□ -0.56
SMCHD1-213ENST00000609587 RGS20O76081 388 aa11.58□□□□□ -0.56
SMCHD1-213ENST00000609587 NKX1-1Q15270 411 aaPredicted RBP11.56□□□□□ -0.56
SMCHD1-213ENST00000609587 PPP1R15BQ5SWA1 713 aa11.56□□□□□ -0.56
SMCHD1-213ENST00000609587 PTPREP23469 700 aa11.55□□□□□ -0.56
SMCHD1-213ENST00000609587 AMER1Q5JTC6 1135 aaPredicted RBP11.55□□□□□ -0.56
SMCHD1-213ENST00000609587 WNT2BQ93097 391 aa11.54□□□□□ -0.56
SMCHD1-213ENST00000609587 JPH4Q96JJ6 628 aa11.54□□□□□ -0.56
SMCHD1-213ENST00000609587 IRX2Q9BZI1 471 aaPredicted RBP11.53□□□□□ -0.56
SMCHD1-213ENST00000609587 MRPL50Q8N5N7 158 aaKnown RBP11.52□□□□□ -0.57
SMCHD1-213ENST00000609587 ADAM33Q9BZ11 813 aa11.52□□□□□ -0.57
SMCHD1-213ENST00000609587 RTN4Q9NQC3 1192 aaKnown RBP11.52□□□□□ -0.57
SMCHD1-213ENST00000609587 NCKAP5LQ9HCH0 1330 aa11.52□□□□□ -0.57
SMCHD1-213ENST00000609587 CHGAP10645 457 aaKnown RBP11.51□□□□□ -0.57
SMCHD1-213ENST00000609587 GOLGA8CPA6NN73 597 aa11.49□□□□□ -0.57
SMCHD1-213ENST00000609587 DNAJC5Q9H3Z4 198 aa11.49□□□□□ -0.57
SMCHD1-213ENST00000609587 ANO8Q9HCE9 1232 aaPredicted RBP11.49□□□□□ -0.57
SMCHD1-213ENST00000609587 EVI5O60447 810 aa11.47□□□□□ -0.57
SMCHD1-213ENST00000609587 ZDHHC16Q969W1 377 aa11.47□□□□□ -0.57
SMCHD1-213ENST00000609587 NBPF3Q9H094 633 aa11.47□□□□□ -0.57
SMCHD1-213ENST00000609587 PPP1R3GB7ZBB8 358 aa11.41□□□□□ -0.58
SMCHD1-213ENST00000609587 ITGBL1O95965 494 aaPredicted RBP11.41□□□□□ -0.58
SMCHD1-213ENST00000609587 PROX2Q3B8N5 592 aa11.41□□□□□ -0.58
SMCHD1-213ENST00000609587 RYDENQ9NUL5 291 aaKnown RBP11.4□□□□□ -0.58
SMCHD1-213ENST00000609587 COL9A1P20849 921 aa11.38□□□□□ -0.59
SMCHD1-213ENST00000609587 PDE4AP27815 886 aa11.38□□□□□ -0.59
SMCHD1-213ENST00000609587 ANKK1Q8NFD2 765 aa11.38□□□□□ -0.59
SMCHD1-213ENST00000609587 RABGEF1Q9UJ41 708 aa11.38□□□□□ -0.59
SMCHD1-213ENST00000609587 BCAMP50895 628 aa11.37□□□□□ -0.59
SMCHD1-213ENST00000609587 PCDHGA10Q9Y5H3 936 aa11.37□□□□□ -0.59
SMCHD1-213ENST00000609587 DDX27Q96GQ7 796 aaKnown RBP11.35□□□□□ -0.59
SMCHD1-213ENST00000609587 EMILIN3Q9NT22 766 aa11.35□□□□□ -0.59
SMCHD1-213ENST00000609587 MFSD10Q14728 455 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms