RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 ATMINO43313 823 aaPredicted RBP13.99□□□□□ -0.17
SMCHD1-213ENST00000609587 POTEJP0CG39 1038 aa13.96□□□□□ -0.17
SMCHD1-213ENST00000609587 POTEMA6NI47 508 aa13.94□□□□□ -0.18
SMCHD1-213ENST00000609587 SLC39A7Q92504 469 aa13.93□□□□□ -0.18
SMCHD1-213ENST00000609587 CCDC61Q9Y6R9 512 aa13.93□□□□□ -0.18
SMCHD1-213ENST00000609587 TSPYL2Q9H2G4 693 aaPredicted RBP13.92□□□□□ -0.18
SMCHD1-213ENST00000609587 C7P10643 843 aa13.91□□□□□ -0.18
SMCHD1-213ENST00000609587 POTEGQ6S5H5 508 aa13.9□□□□□ -0.18
SMCHD1-213ENST00000609587 ATN1P54259 1190 aaPredicted RBP13.86□□□□□ -0.19
SMCHD1-213ENST00000609587 KIF12Q96FN5 646 aa13.84□□□□□ -0.19
SMCHD1-213ENST00000609587 TRPC6Q9Y210 931 aa13.81□□□□□ -0.2
SMCHD1-213ENST00000609587 BMP2KQ9NSY1 1161 aaPredicted RBP13.8□□□□□ -0.2
SMCHD1-213ENST00000609587 LCE2DQ5TA82 110 aaPredicted RBP13.79□□□□□ -0.2
SMCHD1-213ENST00000609587 MAMSTRQ6ZN01 415 aa13.78□□□□□ -0.2
SMCHD1-213ENST00000609587 POTEFA5A3E0 1075 aa13.77□□□□□ -0.21
SMCHD1-213ENST00000609587 RASEFQ8IZ41 740 aa13.76□□□□□ -0.21
SMCHD1-213ENST00000609587 MAP3K13O43283 966 aa13.74□□□□□ -0.21
SMCHD1-213ENST00000609587 SCUBE2Q9NQ36 999 aa13.71□□□□□ -0.21
SMCHD1-213ENST00000609587 TIE1P35590 1138 aa13.69□□□□□ -0.22
SMCHD1-213ENST00000609587 MIER1Q8N108 512 aa13.67□□□□□ -0.22
SMCHD1-213ENST00000609587 TTLL13PA6NNM8 815 aa13.65□□□□□ -0.22
SMCHD1-213ENST00000609587 PLEKHG5O94827 1062 aa13.65□□□□□ -0.22
SMCHD1-213ENST00000609587 PCDH10Q9P2E7 1040 aa13.64□□□□□ -0.23
SMCHD1-213ENST00000609587 COLQQ9Y215 455 aaPredicted RBP13.64□□□□□ -0.23
SMCHD1-213ENST00000609587 FAM163AQ96GL9 167 aaPredicted RBP13.62□□□□□ -0.23
SMCHD1-213ENST00000609587 TRIM35Q9UPQ4 493 aa13.55□□□□□ -0.24
SMCHD1-213ENST00000609587 SEC24BO95487 1268 aa13.54□□□□□ -0.24
SMCHD1-213ENST00000609587 PLCD3Q8N3E9 789 aa13.54□□□□□ -0.24
SMCHD1-213ENST00000609587 PCDHB13Q9Y5F0 798 aa13.54□□□□□ -0.24
SMCHD1-213ENST00000609587 NUBP1P53384 320 aa13.53□□□□□ -0.24
SMCHD1-213ENST00000609587 IER5LQ5T953 404 aa13.52□□□□□ -0.25
SMCHD1-213ENST00000609587 SGIP1Q9BQI5 828 aa13.52□□□□□ -0.25
SMCHD1-213ENST00000609587 IFNL1Q8IU54 200 aa13.49□□□□□ -0.25
SMCHD1-213ENST00000609587 ZBTB47Q9UFB7 747 aaPredicted RBP13.43□□□□□ -0.26
SMCHD1-213ENST00000609587 FAM212AQ96EL1 285 aa13.41□□□□□ -0.26
SMCHD1-213ENST00000609587 TMEM106CQ9BVX2 250 aa13.41□□□□□ -0.26
SMCHD1-213ENST00000609587 SLAIN1Q8ND83 568 aa13.37□□□□□ -0.27
SMCHD1-213ENST00000609587 CDAN1Q8IWY9 1227 aa13.36□□□□□ -0.27
SMCHD1-213ENST00000609587 PLCG2P16885 1265 aa13.34□□□□□ -0.27
SMCHD1-213ENST00000609587 IRX5P78411 483 aaPredicted RBP13.34□□□□□ -0.27
SMCHD1-213ENST00000609587 ST18O60284 1047 aa13.33□□□□□ -0.28
SMCHD1-213ENST00000609587 FKBP8Q14318 412 aa13.28□□□□□ -0.28
SMCHD1-213ENST00000609587 PYGBP11216 843 aa13.25□□□□□ -0.29
SMCHD1-213ENST00000609587 OCEL1Q9H607 264 aa13.22□□□□□ -0.29
SMCHD1-213ENST00000609587 PCDHB8Q9UN66 801 aa13.21□□□□□ -0.29
SMCHD1-213ENST00000609587 DCAF8Q5TAQ9 597 aa13.19□□□□□ -0.3
SMCHD1-213ENST00000609587 TMEM121BQ9BXQ6 578 aaPredicted RBP13.14□□□□□ -0.31
SMCHD1-213ENST00000609587 PDCD7Q8N8D1 485 aaKnown RBP13.13□□□□□ -0.31
SMCHD1-213ENST00000609587 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.12□□□□□ -0.31
SMCHD1-213ENST00000609587 MARVELD3Q96A59 401 aa13.09□□□□□ -0.31
SMCHD1-213ENST00000609587 SNPHO15079 494 aa13.06□□□□□ -0.32
SMCHD1-213ENST00000609587 MMRN1Q13201 1228 aa13.06□□□□□ -0.32
SMCHD1-213ENST00000609587 SPNS2Q8IVW8 549 aa13.06□□□□□ -0.32
SMCHD1-213ENST00000609587 FBXO3Q9UK99 471 aa13.05□□□□□ -0.32
SMCHD1-213ENST00000609587 ZNF467Q7Z7K2 595 aaPredicted RBP13.02□□□□□ -0.33
SMCHD1-213ENST00000609587 C3orf67Q6ZVT6 689 aa13.01□□□□□ -0.33
SMCHD1-213ENST00000609587 VASPP50552 380 aaPredicted RBP12.99□□□□□ -0.33
SMCHD1-213ENST00000609587 GSE1Q14687 1217 aa12.98□□□□□ -0.33
SMCHD1-213ENST00000609587 MKRN3Q13064 507 aaKnown RBP12.97□□□□□ -0.33
SMCHD1-213ENST00000609587 GOLGA2Q08379 1002 aa12.96□□□□□ -0.33
SMCHD1-213ENST00000609587 EMP3P54852 163 aa12.95□□□□□ -0.34
SMCHD1-213ENST00000609587 KLHL34Q8N239 644 aa12.95□□□□□ -0.34
SMCHD1-213ENST00000609587 CHRM1P11229 460 aaPredicted RBP12.94□□□□□ -0.34
SMCHD1-213ENST00000609587 PSEN1P49768 467 aa12.94□□□□□ -0.34
SMCHD1-213ENST00000609587 L3MBTL3Q96JM7 780 aaPredicted RBP12.94□□□□□ -0.34
SMCHD1-213ENST00000609587 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.94□□□□□ -0.341e-8■□□□□ 8.5
SMCHD1-213ENST00000609587 POTEB3A0JP26 581 aa12.92□□□□□ -0.34
SMCHD1-213ENST00000609587 POTEBQ6S5H4 581 aa12.92□□□□□ -0.34
SMCHD1-213ENST00000609587 ILDR1Q86SU0 546 aaPredicted RBP12.92□□□□□ -0.34
SMCHD1-213ENST00000609587 KRTAP3-3Q9BYR6 98 aa12.89□□□□□ -0.35
SMCHD1-213ENST00000609587 KRTAP3-2Q9BYR7 98 aa12.89□□□□□ -0.35
SMCHD1-213ENST00000609587 HS3ST6Q96QI5 342 aa12.87□□□□□ -0.35
SMCHD1-213ENST00000609587 DPY19L2Q6NUT2 758 aa12.86□□□□□ -0.35
SMCHD1-213ENST00000609587 PDAP1Q13442 181 aaKnown RBP12.85□□□□□ -0.35
SMCHD1-213ENST00000609587 FAM205CA6NFA0 338 aa12.83□□□□□ -0.36
SMCHD1-213ENST00000609587 CABP2Q9NPB3 220 aa12.8□□□□□ -0.36
SMCHD1-213ENST00000609587 HOXB3P14651 431 aaPredicted RBP12.79□□□□□ -0.36
SMCHD1-213ENST00000609587 BOLA1Q9Y3E2 137 aa12.77□□□□□ -0.37
SMCHD1-213ENST00000609587 IFNLR1Q8IU57 520 aaPredicted RBP12.73□□□□□ -0.37
SMCHD1-213ENST00000609587 SPOCK2Q92563 424 aa12.72□□□□□ -0.37
SMCHD1-213ENST00000609587 CIZ1Q9ULV3 898 aaPredicted RBP12.71□□□□□ -0.37
SMCHD1-213ENST00000609587 G3V3G9 751 aa12.69□□□□□ -0.38
SMCHD1-213ENST00000609587 HOXB1P14653 301 aaPredicted RBP12.67□□□□□ -0.38
SMCHD1-213ENST00000609587 DOK7Q18PE1 504 aa12.63□□□□□ -0.39
SMCHD1-213ENST00000609587 ZNF710Q8N1W2 664 aa12.63□□□□□ -0.39
SMCHD1-213ENST00000609587 EFCAB3Q8N7B9 438 aa12.61□□□□□ -0.39
SMCHD1-213ENST00000609587 ERBB3P21860 1342 aa12.6□□□□□ -0.39
SMCHD1-213ENST00000609587 TMEM92Q6UXU6 159 aa12.57□□□□□ -0.4
SMCHD1-213ENST00000609587 MICALL2Q8IY33 904 aa12.56□□□□□ -0.4
SMCHD1-213ENST00000609587 VARS2Q5ST30 1063 aaKnown RBP12.55□□□□□ -0.4
SMCHD1-213ENST00000609587 RIMBP2O15034 1052 aa12.52□□□□□ -0.41
SMCHD1-213ENST00000609587 RNF166Q96A37 237 aaPredicted RBP12.51□□□□□ -0.41
SMCHD1-213ENST00000609587 TRIM41Q8WV44 630 aa12.49□□□□□ -0.41
SMCHD1-213ENST00000609587 MS4A4AQ96JQ5 239 aa12.49□□□□□ -0.41
SMCHD1-213ENST00000609587 RNF25Q96BH1 459 aaPredicted RBP12.47□□□□□ -0.41
SMCHD1-213ENST00000609587 ZSWIM6Q9HCJ5 1215 aa12.47□□□□□ -0.41
SMCHD1-213ENST00000609587 GPR153Q6NV75 609 aa12.45□□□□□ -0.42
SMCHD1-213ENST00000609587 MYT1LQ9UL68 1186 aa12.44□□□□□ -0.42
SMCHD1-213ENST00000609587 ZNF687Q8N1G0 1237 aa12.43□□□□□ -0.42
SMCHD1-213ENST00000609587 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms