RNA–Protein interactions for RNA: ENST00000602557.5

CSMD1-216, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 11,740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-216ENST00000602557 U2SURPO15042 1029 aaKnown RBP11.03□□□□□ -0.64
CSMD1-216ENST00000602557 POGKQ9P215 609 aa11.03□□□□□ -0.64
CSMD1-216ENST00000602557 USP35Q9P2H5 1018 aa11.03□□□□□ -0.64
CSMD1-216ENST00000602557 CEP164Q9UPV0 1460 aa11.03□□□□□ -0.64
CSMD1-216ENST00000602557 NPHP1O15259 732 aa11.03□□□□□ -0.64
CSMD1-216ENST00000602557 EIF4G1Q04637 1599 aaKnown RBP11.02□□□□□ -0.65
CSMD1-216ENST00000602557 APPP05067 770 aa11.02□□□□□ -0.65
CSMD1-216ENST00000602557 GOLGA6L4A6NEF3 574 aa11.01□□□□□ -0.65
CSMD1-216ENST00000602557 NUDCQ9Y266 331 aa11.01□□□□□ -0.65
CSMD1-216ENST00000602557 BRPF3Q9ULD4 1205 aa11.01□□□□□ -0.65
CSMD1-216ENST00000602557 WRNQ14191 1432 aaPredicted RBP eCLIP11.01□□□□□ -0.65
CSMD1-216ENST00000602557 BAZ1BQ9UIG0 1483 aaKnown RBP11.01□□□□□ -0.65
CSMD1-216ENST00000602557 KIF27Q86VH2 1401 aa11.01□□□□□ -0.65
CSMD1-216ENST00000602557 MAPK8IP2Q13387 824 aaPredicted RBP11.01□□□□□ -0.65
CSMD1-216ENST00000602557 FOXD4L1Q9NU39 408 aa11□□□□□ -0.65
CSMD1-216ENST00000602557 SLC4A3P48751 1232 aa11□□□□□ -0.65
CSMD1-216ENST00000602557 GSE1Q14687 1217 aa11□□□□□ -0.65
CSMD1-216ENST00000602557 CHMP4BQ9H444 224 aaKnown RBP10.99□□□□□ -0.65
CSMD1-216ENST00000602557 GOLGA2Q08379 1002 aa10.98□□□□□ -0.65
CSMD1-216ENST00000602557 GOLGA6L1Q8N7Z2 621 aa10.97□□□□□ -0.65
CSMD1-216ENST00000602557 SETQ01105 290 aaPredicted RBP10.97□□□□□ -0.65
CSMD1-216ENST00000602557 CLSTN1O94985 981 aa10.97□□□□□ -0.65
CSMD1-216ENST00000602557 MS4A1P11836 297 aa10.97□□□□□ -0.65
CSMD1-216ENST00000602557 NOC3LQ8WTT2 800 aaKnown RBP10.96□□□□□ -0.65
CSMD1-216ENST00000602557 SOX12O15370 315 aa10.95□□□□□ -0.66
CSMD1-216ENST00000602557 CCNB3Q8WWL7 1395 aa10.95□□□□□ -0.66
CSMD1-216ENST00000602557 PATL2C9JE40 543 aaKnown RBP10.95□□□□□ -0.66
CSMD1-216ENST00000602557 TNIKQ9UKE5 1360 aa10.95□□□□□ -0.66
CSMD1-216ENST00000602557 APBB1O00213 710 aa10.95□□□□□ -0.66
CSMD1-216ENST00000602557 TCERG1O14776 1098 aaKnown RBP10.94□□□□□ -0.66
CSMD1-216ENST00000602557 MCCP23508 829 aa10.94□□□□□ -0.66
CSMD1-216ENST00000602557 FOXD4L5Q5VV16 416 aaPredicted RBP10.94□□□□□ -0.66
CSMD1-216ENST00000602557 DCAF11Q8TEB1 546 aa10.94□□□□□ -0.66
CSMD1-216ENST00000602557 FOXD4L4Q8WXT5 416 aaPredicted RBP10.94□□□□□ -0.66
CSMD1-216ENST00000602557 KAT6BQ8WYB5 2073 aa10.93□□□□□ -0.66
CSMD1-216ENST00000602557 NCBP3Q53F19 620 aaKnown RBP10.93□□□□□ -0.66
CSMD1-216ENST00000602557 FANCIQ9NVI1 1328 aa10.93□□□□□ -0.66
CSMD1-216ENST00000602557 GNL2Q13823 731 aaKnown RBP10.92□□□□□ -0.66
CSMD1-216ENST00000602557 SAFB2Q14151 953 aaKnown RBP eCLIP10.92□□□□□ -0.66
CSMD1-216ENST00000602557 TMF1P82094 1093 aa10.92□□□□□ -0.66
CSMD1-216ENST00000602557 MFAP1P55081 439 aaKnown RBP10.92□□□□□ -0.66
CSMD1-216ENST00000602557 ERCC6Q03468 1493 aa10.91□□□□□ -0.66
CSMD1-216ENST00000602557 MORC1Q86VD1 984 aa10.91□□□□□ -0.66
CSMD1-216ENST00000602557 BCL11BQ9C0K0 894 aaPredicted RBP10.91□□□□□ -0.66
CSMD1-216ENST00000602557 KANK1Q14678 1352 aa10.91□□□□□ -0.66
CSMD1-216ENST00000602557 ISY1Q9ULR0 285 aaKnown RBP10.91□□□□□ -0.66
CSMD1-216ENST00000602557 KTN1Q86UP2 1357 aaKnown RBP10.91□□□□□ -0.66
CSMD1-216ENST00000602557 ARHGAP35Q9NRY4 1499 aa10.9□□□□□ -0.66
CSMD1-216ENST00000602557 SRPK2P78362 688 aaKnown RBP10.9□□□□□ -0.66
CSMD1-216ENST00000602557 FHAD1B1AJZ9 1412 aa10.9□□□□□ -0.66
CSMD1-216ENST00000602557 RBM10P98175 930 aaKnown RBP10.89□□□□□ -0.67
CSMD1-216ENST00000602557 KIAA1211Q6ZU35 1233 aa10.89□□□□□ -0.67
CSMD1-216ENST00000602557 SYAP1Q96A49 352 aaPredicted RBP10.88□□□□□ -0.67
CSMD1-216ENST00000602557 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.88□□□□□ -0.67
CSMD1-216ENST00000602557 PDE4CQ08493 712 aa10.88□□□□□ -0.67
CSMD1-216ENST00000602557 ITPRIPQ8IWB1 547 aa10.87□□□□□ -0.67
CSMD1-216ENST00000602557 CCAR2Q8N163 923 aaKnown RBP10.87□□□□□ -0.67
CSMD1-216ENST00000602557 CALD1Q05682 793 aaKnown RBP10.87□□□□□ -0.67
CSMD1-216ENST00000602557 FOXD1Q16676 465 aa10.87□□□□□ -0.67
CSMD1-216ENST00000602557 ZNF592Q92610 1267 aa10.87□□□□□ -0.67
CSMD1-216ENST00000602557 CCER2I3L3R5 266 aa10.87□□□□□ -0.67
CSMD1-216ENST00000602557 TAF7LQ5H9L4 462 aa10.86□□□□□ -0.67
CSMD1-216ENST00000602557 SETD5Q9C0A6 1442 aa10.86□□□□□ -0.67
CSMD1-216ENST00000602557 ABCC8Q09428 1581 aa10.86□□□□□ -0.67
CSMD1-216ENST00000602557 FAM43AQ8N2R8 423 aa10.86□□□□□ -0.67
CSMD1-216ENST00000602557 DDX11L8A8MPP1 907 aa10.86□□□□□ -0.67
CSMD1-216ENST00000602557 NOL8Q76FK4 1167 aaKnown RBP10.86□□□□□ -0.67
CSMD1-216ENST00000602557 NACADO15069 1562 aa10.85□□□□□ -0.67
CSMD1-216ENST00000602557 ROCK2O75116 1388 aaKnown RBP10.85□□□□□ -0.67
CSMD1-216ENST00000602557 RCAN3Q9UKA8 241 aa10.85□□□□□ -0.67
CSMD1-216ENST00000602557 HSPA5P11021 654 aaKnown RBP10.85□□□□□ -0.67
CSMD1-216ENST00000602557 R3HCC1Q9Y3T6 440 aaKnown RBP10.84□□□□□ -0.67
CSMD1-216ENST00000602557 RTF1Q92541 710 aaKnown RBP10.84□□□□□ -0.67
CSMD1-216ENST00000602557 IPO8O15397 1037 aaKnown RBP10.83□□□□□ -0.68
CSMD1-216ENST00000602557 STK26Q9P289 416 aa10.83□□□□□ -0.68
CSMD1-216ENST00000602557 BAZ1AQ9NRL2 1556 aaPredicted RBP10.82□□□□□ -0.68
CSMD1-216ENST00000602557 MLECQ14165 292 aa10.82□□□□□ -0.68
CSMD1-216ENST00000602557 PDE4AP27815 886 aa10.82□□□□□ -0.68
CSMD1-216ENST00000602557 TEX35Q5T0J7 233 aa10.81□□□□□ -0.68
CSMD1-216ENST00000602557 U2AF1L5P0DN76 240 aaPredicted RBP10.81□□□□□ -0.68
CSMD1-216ENST00000602557 U2AF1Q01081 240 aaKnown RBP eCLIP10.81□□□□□ -0.68
CSMD1-216ENST00000602557 CUX2O14529 1486 aa10.81□□□□□ -0.68
CSMD1-216ENST00000602557 ZNF330Q9Y3S2 320 aaPredicted RBP10.8□□□□□ -0.68
CSMD1-216ENST00000602557 RWDD1Q9H446 243 aaPredicted RBP10.8□□□□□ -0.68
CSMD1-216ENST00000602557 SOGA1O94964 1423 aa10.8□□□□□ -0.68
CSMD1-216ENST00000602557 FOXD4L6Q3SYB3 417 aaPredicted RBP10.8□□□□□ -0.68
CSMD1-216ENST00000602557 FOXD4L3Q6VB84 417 aaPredicted RBP10.8□□□□□ -0.68
CSMD1-216ENST00000602557 PHF14O94880 888 aa10.8□□□□□ -0.68
CSMD1-216ENST00000602557 CFAP44Q96MT7 982 aa10.8□□□□□ -0.68
CSMD1-216ENST00000602557 UBE2Q2Q8WVN8 375 aa10.79□□□□□ -0.68
CSMD1-216ENST00000602557 PKD2Q13563 968 aa10.79□□□□□ -0.68
CSMD1-216ENST00000602557 TPM2P07951 284 aa10.79□□□□□ -0.68
CSMD1-216ENST00000602557 PRDM10Q9NQV6 1147 aa10.79□□□□□ -0.68
CSMD1-216ENST00000602557 VPS8Q8N3P4 1428 aa10.78□□□□□ -0.68
CSMD1-216ENST00000602557 HSP90B1P14625 803 aaKnown RBP10.78□□□□□ -0.68
CSMD1-216ENST00000602557 TRIM6-TRIM34B2RNG4 842 aa10.78□□□□□ -0.68
CSMD1-216ENST00000602557 CSPP1Q1MSJ5 1256 aa10.78□□□□□ -0.68
CSMD1-216ENST00000602557 NOM1Q5C9Z4 860 aaKnown RBP10.78□□□□□ -0.68
CSMD1-216ENST00000602557 PAK3O75914 559 aaPredicted RBP10.77□□□□□ -0.68
CSMD1-216ENST00000602557 EIF3AQ14152 1382 aaKnown RBP10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms