RNA–Protein interactions for RNA: ENST00000600244.5

SSBP4-207, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 2

Gene SSBP4, Length 622 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-207ENST00000600244 CFAP74Q9C0B2 1584 aa30.44■■■□□ 2.46
SSBP4-207ENST00000600244 CEBPAP49715 358 aaPredicted RBP30.43■■■□□ 2.46
SSBP4-207ENST00000600244 SAMD9Q5K651 1589 aa30.43■■■□□ 2.46
SSBP4-207ENST00000600244 PLEKHD1A6NEE1 506 aa30.42■■■□□ 2.46
SSBP4-207ENST00000600244 HECW1Q76N89 1606 aa30.4■■■□□ 2.46
SSBP4-207ENST00000600244 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.39■■■□□ 2.46
SSBP4-207ENST00000600244 PTPRTO14522 1441 aa30.37■■■□□ 2.45
SSBP4-207ENST00000600244 ATP10AO60312 1499 aa30.34■■■□□ 2.45
SSBP4-207ENST00000600244 UHRF1BP1Q6BDS2 1440 aa30.32■■■□□ 2.44
SSBP4-207ENST00000600244 LTBP4Q8N2S1 1624 aa30.32■■■□□ 2.44
SSBP4-207ENST00000600244 SETD1BQ9UPS6 1966 aaKnown RBP30.31■■■□□ 2.44
SSBP4-207ENST00000600244 SCAPERQ9BY12 1400 aa30.3■■■□□ 2.44
SSBP4-207ENST00000600244 IQSEC2Q5JU85 1478 aa30.29■■■□□ 2.44
SSBP4-207ENST00000600244 C9orf84Q5VXU9 1444 aa30.29■■■□□ 2.44
SSBP4-207ENST00000600244 PLCH2O75038 1416 aa30.22■■■□□ 2.43
SSBP4-207ENST00000600244 EFCAB2Q5VUJ9 269 aa30.1■■■□□ 2.41
SSBP4-207ENST00000600244 NCOA1Q15788 1441 aa30.1■■■□□ 2.41
SSBP4-207ENST00000600244 TRAPPC8Q9Y2L5 1435 aa30.07■■■□□ 2.4
SSBP4-207ENST00000600244 C3P01024 1663 aa30.07■■■□□ 2.4
SSBP4-207ENST00000600244 RANGAP1P46060 587 aaPredicted RBP30.06■■■□□ 2.4
SSBP4-207ENST00000600244 CSRNP3Q8WYN3 585 aa30.06■■■□□ 2.4
SSBP4-207ENST00000600244 AFAP1Q8N556 730 aa30.04■■■□□ 2.4
SSBP4-207ENST00000600244 ZNF518AQ6AHZ1 1483 aa30.03■■■□□ 2.4
SSBP4-207ENST00000600244 CDK13Q14004 1512 aaKnown RBP30.02■■■□□ 2.4
SSBP4-207ENST00000600244 UBAP1LF5GYI3 381 aa30.02■■■□□ 2.4
SSBP4-207ENST00000600244 REREQ9P2R6 1566 aa30.02■■■□□ 2.4
SSBP4-207ENST00000600244 KDM5CP41229 1560 aa30.01■■■□□ 2.39
SSBP4-207ENST00000600244 DIP2CQ9Y2E4 1556 aa29.98■■■□□ 2.39
SSBP4-207ENST00000600244 ZNF335Q9H4Z2 1342 aaPredicted RBP29.96■■■□□ 2.39
SSBP4-207ENST00000600244 MYO5CQ9NQX4 1742 aa29.94■■■□□ 2.38
SSBP4-207ENST00000600244 AGLP35573 1532 aa29.94■■■□□ 2.38
SSBP4-207ENST00000600244 ESF1Q9H501 851 aaKnown RBP29.93■■■□□ 2.38
SSBP4-207ENST00000600244 CAMSAP1Q5T5Y3 1602 aa29.92■■■□□ 2.38
SSBP4-207ENST00000600244 MYT1LQ9UL68 1186 aa29.91■■■□□ 2.38
SSBP4-207ENST00000600244 MLH3Q9UHC1 1453 aa29.91■■■□□ 2.38
SSBP4-207ENST00000600244 NCKAP5LQ9HCH0 1330 aa29.9■■■□□ 2.38
SSBP4-207ENST00000600244 ABCA6Q8N139 1617 aa29.88■■■□□ 2.37
SSBP4-207ENST00000600244 CNTLNQ9NXG0 1405 aa29.88■■■□□ 2.37
SSBP4-207ENST00000600244 NPATQ14207 1427 aa29.85■■■□□ 2.37
SSBP4-207ENST00000600244 MED1Q15648 1581 aaPredicted RBP29.83■■■□□ 2.37
SSBP4-207ENST00000600244 ARHGAP5Q13017 1502 aa29.83■■■□□ 2.37
SSBP4-207ENST00000600244 KIF14Q15058 1648 aa29.82■■■□□ 2.36
SSBP4-207ENST00000600244 HSPA1LP34931 641 aa29.8■■■□□ 2.36
SSBP4-207ENST00000600244 CDK11AQ9UQ88 783 aaPredicted RBP29.8■■■□□ 2.36
SSBP4-207ENST00000600244 PKD2Q13563 968 aa29.79■■■□□ 2.36
SSBP4-207ENST00000600244 ZMYM3Q14202 1370 aa29.77■■■□□ 2.36
SSBP4-207ENST00000600244 PLA2R1Q13018 1463 aa29.76■■■□□ 2.35
SSBP4-207ENST00000600244 TROQ12816 1431 aaPredicted RBP29.74■■■□□ 2.35
SSBP4-207ENST00000600244 TCOF1Q13428 1488 aaKnown RBP29.74■■■□□ 2.35
SSBP4-207ENST00000600244 MROH2AA6NES4 1674 aa29.72■■■□□ 2.35
SSBP4-207ENST00000600244 ATP1B4Q9UN42 357 aaPredicted RBP29.72■■■□□ 2.35
SSBP4-207ENST00000600244 KIDINS220Q9ULH0 1771 aa29.69■■■□□ 2.34
SSBP4-207ENST00000600244 CDC42BPBQ9Y5S2 1711 aa29.68■■■□□ 2.34
SSBP4-207ENST00000600244 PPP6R1Q9UPN7 881 aa29.67■■■□□ 2.34
SSBP4-207ENST00000600244 EEA1Q15075 1411 aa29.67■■■□□ 2.34
SSBP4-207ENST00000600244 ABCC1P33527 1531 aa29.66■■■□□ 2.34
SSBP4-207ENST00000600244 PIP4K2BP78356 416 aa29.66■■■□□ 2.34
SSBP4-207ENST00000600244 FMN1Q68DA7 1419 aa29.65■■■□□ 2.34
SSBP4-207ENST00000600244 TOM1O60784 492 aa29.65■■■□□ 2.34
SSBP4-207ENST00000600244 ZNF142P52746 1687 aaPredicted RBP29.65■■■□□ 2.34
SSBP4-207ENST00000600244 SCAF1Q9H7N4 1312 aaKnown RBP29.65■■■□□ 2.34
SSBP4-207ENST00000600244 CLIP1P30622 1438 aa29.64■■■□□ 2.34
SSBP4-207ENST00000600244 CEP170BQ9Y4F5 1589 aaPredicted RBP29.61■■■□□ 2.33
SSBP4-207ENST00000600244 MYO3AQ8NEV4 1616 aa29.61■■■□□ 2.33
SSBP4-207ENST00000600244 PTPRKQ15262 1439 aa29.61■■■□□ 2.33
SSBP4-207ENST00000600244 ITSN2Q9NZM3 1697 aa29.6■■■□□ 2.33
SSBP4-207ENST00000600244 PHF23Q9BUL5 403 aaPredicted RBP29.58■■■□□ 2.33
SSBP4-207ENST00000600244 PREX2Q70Z35 1606 aa29.56■■■□□ 2.32
SSBP4-207ENST00000600244 SUPT6HQ7KZ85 1726 aaKnown RBP29.54■■■□□ 2.32
SSBP4-207ENST00000600244 CPS1P31327 1500 aa29.54■■■□□ 2.32
SSBP4-207ENST00000600244 CLTCQ00610 1675 aaKnown RBP29.52■■■□□ 2.32
SSBP4-207ENST00000600244 SAMD9LQ8IVG5 1584 aa29.52■■■□□ 2.32
SSBP4-207ENST00000600244 ARHGAP35Q9NRY4 1499 aa29.5■■■□□ 2.31
SSBP4-207ENST00000600244 SHANK2Q9UPX8 1470 aa29.49■■■□□ 2.31
SSBP4-207ENST00000600244 LRRIQ1Q96JM4 1722 aa29.48■■■□□ 2.31
SSBP4-207ENST00000600244 A2ML1A8K2U0 1454 aa29.46■■■□□ 2.31
SSBP4-207ENST00000600244 SPAG9O60271 1321 aaKnown RBP29.45■■■□□ 2.31
SSBP4-207ENST00000600244 ALKQ9UM73 1620 aa29.45■■■□□ 2.31
SSBP4-207ENST00000600244 DNMT1P26358 1616 aaKnown RBP29.44■■■□□ 2.3
SSBP4-207ENST00000600244 PLXNC1O60486 1568 aa29.43■■■□□ 2.3
SSBP4-207ENST00000600244 GGT6Q6P531 493 aa29.41■■■□□ 2.3
SSBP4-207ENST00000600244 NEURL4Q96JN8 1562 aa29.41■■■□□ 2.3
SSBP4-207ENST00000600244 CDC42BPAQ5VT25 1732 aa29.4■■■□□ 2.3
SSBP4-207ENST00000600244 A2MP01023 1474 aa29.39■■■□□ 2.3
SSBP4-207ENST00000600244 HNRNPMP52272 730 aaKnown RBP eCLIP29.38■■■□□ 2.29
SSBP4-207ENST00000600244 RGS17Q9UGC6 210 aaPredicted RBP29.38■■■□□ 2.29
SSBP4-207ENST00000600244 ZNF777Q9ULD5 760 aaPredicted RBP29.36■■■□□ 2.29
SSBP4-207ENST00000600244 ATP7AQ04656 1500 aa29.35■■■□□ 2.29
SSBP4-207ENST00000600244 VWDEQ8N2E2 1590 aa29.35■■■□□ 2.29
SSBP4-207ENST00000600244 SYCP2Q9BX26 1530 aa29.35■■■□□ 2.29
SSBP4-207ENST00000600244 POLR1AO95602 1720 aaPredicted RBP29.34■■■□□ 2.29
SSBP4-207ENST00000600244 UBTFP17480 764 aaKnown RBP29.34■■■□□ 2.29
SSBP4-207ENST00000600244 INO80Q9ULG1 1556 aaPredicted RBP29.3■■■□□ 2.28
SSBP4-207ENST00000600244 KIAA1107Q9UPP5 1409 aa29.29■■■□□ 2.28
SSBP4-207ENST00000600244 ANKLE2Q86XL3 938 aa29.29■■■□□ 2.28
SSBP4-207ENST00000600244 GPATCH8Q9UKJ3 1502 aaKnown RBP29.28■■■□□ 2.28
SSBP4-207ENST00000600244 CCDC18Q5T9S5 1454 aa29.28■■■□□ 2.28
SSBP4-207ENST00000600244 FBXO31Q5XUX0 539 aaPredicted RBP29.26■■■□□ 2.27
SSBP4-207ENST00000600244 TNRQ92752 1358 aa29.26■■■□□ 2.27
SSBP4-207ENST00000600244 MED14O60244 1454 aa29.24■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms