RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 EHBP1L1Q8N3D4 1523 aa21.99■■□□□ 1.11
UPF1-205ENST00000598209 EFCAB2Q5VUJ9 269 aa21.98■■□□□ 1.11
UPF1-205ENST00000598209 TIAM1Q13009 1591 aa21.98■■□□□ 1.11
UPF1-205ENST00000598209 ADGRL1O94910 1474 aa21.97■■□□□ 1.11
UPF1-205ENST00000598209 SCAPERQ9BY12 1400 aa21.94■■□□□ 1.1
UPF1-205ENST00000598209 GPATCH8Q9UKJ3 1502 aaKnown RBP21.91■■□□□ 1.1
UPF1-205ENST00000598209 SUPT6HQ7KZ85 1726 aaKnown RBP21.91■■□□□ 1.1
UPF1-205ENST00000598209 MAP3K1Q13233 1512 aa21.9■■□□□ 1.1
UPF1-205ENST00000598209 ZMYM4Q5VZL5 1548 aa21.9■■□□□ 1.1
UPF1-205ENST00000598209 POGZQ7Z3K3 1410 aa21.89■■□□□ 1.1
UPF1-205ENST00000598209 CCNB3Q8WWL7 1395 aa21.89■■□□□ 1.1
UPF1-205ENST00000598209 ABCC1P33527 1531 aa21.87■■□□□ 1.09
UPF1-205ENST00000598209 ITSN2Q9NZM3 1697 aa21.87■■□□□ 1.09
UPF1-205ENST00000598209 LRRC9Q6ZRR7 1453 aa21.86■■□□□ 1.09
UPF1-205ENST00000598209 ARHGEF40Q8TER5 1519 aa21.85■■□□□ 1.09
UPF1-205ENST00000598209 SAMD9LQ8IVG5 1584 aa21.85■■□□□ 1.09
UPF1-205ENST00000598209 NCOA2Q15596 1464 aa21.84■■□□□ 1.09
UPF1-205ENST00000598209 ZNF518AQ6AHZ1 1483 aa21.83■■□□□ 1.09
UPF1-205ENST00000598209 KDM4FA0A1W2PPD8 638 aa21.83■■□□□ 1.09
UPF1-205ENST00000598209 ZNF777Q9ULD5 760 aaPredicted RBP21.83■■□□□ 1.09
UPF1-205ENST00000598209 ZFYVE16Q7Z3T8 1539 aa21.82■■□□□ 1.08
UPF1-205ENST00000598209 ARHGEF12Q9NZN5 1544 aa21.82■■□□□ 1.08
UPF1-205ENST00000598209 AEBP2Q6ZN18 517 aaPredicted RBP21.82■■□□□ 1.08
UPF1-205ENST00000598209 CFDP1Q9UEE9 299 aaPredicted RBP21.82■■□□□ 1.08
UPF1-205ENST00000598209 MAGI2Q86UL8 1455 aa21.82■■□□□ 1.08
UPF1-205ENST00000598209 KANK4Q5T7N3 995 aaPredicted RBP21.81■■□□□ 1.08
UPF1-205ENST00000598209 KDM5CP41229 1560 aa21.81■■□□□ 1.08
UPF1-205ENST00000598209 APLP2Q06481 763 aa21.8■■□□□ 1.08
UPF1-205ENST00000598209 YEATS2Q9ULM3 1422 aa21.8■■□□□ 1.08
UPF1-205ENST00000598209 AFAP1Q8N556 730 aa21.79■■□□□ 1.08
UPF1-205ENST00000598209 SYCP2Q9BX26 1530 aa21.79■■□□□ 1.08
UPF1-205ENST00000598209 TRAPPC8Q9Y2L5 1435 aa21.79■■□□□ 1.08
UPF1-205ENST00000598209 HECW2Q9P2P5 1572 aa21.77■■□□□ 1.08
UPF1-205ENST00000598209 PLEKHH2Q8IVE3 1493 aa21.77■■□□□ 1.07
UPF1-205ENST00000598209 KIAA1107Q9UPP5 1409 aa21.74■■□□□ 1.07
UPF1-205ENST00000598209 HNRNPMP52272 730 aaKnown RBP eCLIP21.73■■□□□ 1.07
UPF1-205ENST00000598209 SIGLEC1Q9BZZ2 1709 aa21.72■■□□□ 1.07
UPF1-205ENST00000598209 ZNF644Q9H582 1327 aaPredicted RBP21.72■■□□□ 1.07
UPF1-205ENST00000598209 MLH3Q9UHC1 1453 aa21.71■■□□□ 1.07
UPF1-205ENST00000598209 MYT1LQ9UL68 1186 aa21.71■■□□□ 1.07
UPF1-205ENST00000598209 ARID4BQ4LE39 1312 aaPredicted RBP21.71■■□□□ 1.07
UPF1-205ENST00000598209 BCORL1Q5H9F3 1711 aa21.71■■□□□ 1.07
UPF1-205ENST00000598209 KIDINS220Q9ULH0 1771 aa21.71■■□□□ 1.07
UPF1-205ENST00000598209 ATP10AO60312 1499 aa21.71■■□□□ 1.07
UPF1-205ENST00000598209 DIP2CQ9Y2E4 1556 aa21.7■■□□□ 1.06
UPF1-205ENST00000598209 ABCA6Q8N139 1617 aa21.69■■□□□ 1.06
UPF1-205ENST00000598209 C9orf84Q5VXU9 1444 aa21.68■■□□□ 1.06
UPF1-205ENST00000598209 CAMSAP2Q08AD1 1489 aa21.68■■□□□ 1.06
UPF1-205ENST00000598209 ADAMTSL3P82987 1691 aa21.68■■□□□ 1.06
UPF1-205ENST00000598209 MBD5Q9P267 1494 aa21.65■■□□□ 1.06
UPF1-205ENST00000598209 MYOM3Q5VTT5 1437 aa21.65■■□□□ 1.06
UPF1-205ENST00000598209 SPAG9O60271 1321 aaKnown RBP21.64■■□□□ 1.05
UPF1-205ENST00000598209 INO80Q9ULG1 1556 aaPredicted RBP21.64■■□□□ 1.05
UPF1-205ENST00000598209 REREQ9P2R6 1566 aa21.63■■□□□ 1.05
UPF1-205ENST00000598209 ATP7AQ04656 1500 aa21.63■■□□□ 1.05
UPF1-205ENST00000598209 MIA2Q96PC5 1412 aa21.62■■□□□ 1.05
UPF1-205ENST00000598209 MADDQ8WXG6 1647 aa21.62■■□□□ 1.05
UPF1-205ENST00000598209 CCDC141Q6ZP82 1450 aa21.59■■□□□ 1.05
UPF1-205ENST00000598209 ARHGEF5Q12774 1597 aa21.59■■□□□ 1.05
UPF1-205ENST00000598209 RIMS1Q86UR5 1692 aaKnown RBP21.57■■□□□ 1.04
UPF1-205ENST00000598209 FER1L4A9Z1Z3 1794 aa21.56■■□□□ 1.04
UPF1-205ENST00000598209 PTPN23Q9H3S7 1636 aa21.56■■□□□ 1.04
UPF1-205ENST00000598209 MLECQ14165 292 aa21.56■■□□□ 1.04
UPF1-205ENST00000598209 RSPH4AQ5TD94 716 aa21.56■■□□□ 1.04
UPF1-205ENST00000598209 ADGBQ8N7X0 1667 aa21.55■■□□□ 1.04
UPF1-205ENST00000598209 AGLP35573 1532 aa21.55■■□□□ 1.04
UPF1-205ENST00000598209 RTEL1-TNFRSF6BF6WH68 1400 aa21.55■■□□□ 1.04
UPF1-205ENST00000598209 PTPRMP28827 1452 aa21.53■■□□□ 1.04
UPF1-205ENST00000598209 FGD6Q6ZV73 1430 aa21.53■■□□□ 1.04
UPF1-205ENST00000598209 PLXNC1O60486 1568 aa21.51■■□□□ 1.03
UPF1-205ENST00000598209 A2MP01023 1474 aa21.51■■□□□ 1.03
UPF1-205ENST00000598209 MAST1Q9Y2H9 1570 aa21.48■■□□□ 1.03
UPF1-205ENST00000598209 TCOF1Q13428 1488 aaKnown RBP21.48■■□□□ 1.03
UPF1-205ENST00000598209 TSPY4P0CV99 314 aa21.48■■□□□ 1.03
UPF1-205ENST00000598209 TSPY10P0CW01 314 aa21.48■■□□□ 1.03
UPF1-205ENST00000598209 CROCC2H7BZ55 1655 aa21.47■■□□□ 1.03
UPF1-205ENST00000598209 DNMT1P26358 1616 aaKnown RBP21.44■■□□□ 1.02
UPF1-205ENST00000598209 PPARGC1BQ86YN6 1023 aaKnown RBP21.44■■□□□ 1.02
UPF1-205ENST00000598209 ABCC5O15440 1437 aa21.42■■□□□ 1.02
UPF1-205ENST00000598209 DHX29Q7Z478 1369 aaKnown RBP21.42■■□□□ 1.02
UPF1-205ENST00000598209 SHANK2Q9UPX8 1470 aa21.4■■□□□ 1.02
UPF1-205ENST00000598209 DAPK1P53355 1430 aa21.4■■□□□ 1.02
UPF1-205ENST00000598209 PLPPR3Q6T4P5 718 aa21.39■■□□□ 1.01
UPF1-205ENST00000598209 FAM50AQ14320 339 aaKnown RBP21.37■■□□□ 1.01
UPF1-205ENST00000598209 ESF1Q9H501 851 aaKnown RBP21.37■■□□□ 1.01
UPF1-205ENST00000598209 C3P01024 1663 aa21.36■■□□□ 1.01
UPF1-205ENST00000598209 GGT6Q6P531 493 aa21.35■■□□□ 1.01
UPF1-205ENST00000598209 CNTLNQ9NXG0 1405 aa21.35■■□□□ 1.01
UPF1-205ENST00000598209 MROH2AA6NES4 1674 aa21.34■■□□□ 1.01
UPF1-205ENST00000598209 CLTCQ00610 1675 aaKnown RBP21.34■■□□□ 1.01
UPF1-205ENST00000598209 KIF3BO15066 747 aa21.33■■□□□ 1.01
UPF1-205ENST00000598209 CEBPAP49715 358 aaPredicted RBP21.33■■□□□ 1.01
UPF1-205ENST00000598209 DUOX2Q9NRD8 1548 aa21.32■■□□□ 1
UPF1-205ENST00000598209 EIF2AK4Q9P2K8 1649 aaKnown RBP21.32■■□□□ 1
UPF1-205ENST00000598209 CHIC2Q9UKJ5 165 aa21.3■■□□□ 1
UPF1-205ENST00000598209 KIF15Q9NS87 1388 aa21.3■■□□□ 1
UPF1-205ENST00000598209 PPP6R1Q9UPN7 881 aa21.29■■□□□ 1
UPF1-205ENST00000598209 RNF17Q9BXT8 1623 aaKnown RBP21.29■■□□□ 1
UPF1-205ENST00000598209 SETD1BQ9UPS6 1966 aaKnown RBP21.28■■□□□ 1
UPF1-205ENST00000598209 ANKRD30AQ9BXX3 1397 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms