RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 NISCHQ9Y2I1 1504 aa33.74■■■□□ 2.99
UPF1-205ENST00000598209 CCDC180Q9P1Z9 1646 aa30.06■■■□□ 2.4
UPF1-205ENST00000598209 ABCC9O60706 1549 aa29.4■■■□□ 2.3
UPF1-205ENST00000598209 RB1CC1Q8TDY2 1594 aa28.28■■■□□ 2.12
UPF1-205ENST00000598209 NACADO15069 1562 aa28.23■■■□□ 2.11
UPF1-205ENST00000598209 DCAF8L2P0C7V8 631 aa28.19■■■□□ 2.1
UPF1-205ENST00000598209 ZCCHC6Q5VYS8 1495 aaKnown RBP28.1■■■□□ 2.09
UPF1-205ENST00000598209 MYO15BQ96JP2 1530 aa28.03■■■□□ 2.08
UPF1-205ENST00000598209 DCAF1Q9Y4B6 1507 aa27.91■■■□□ 2.06
UPF1-205ENST00000598209 UNC13AQ9UPW8 1703 aa27.72■■■□□ 2.03
UPF1-205ENST00000598209 PABPN1Q86U42 306 aaKnown RBP eCLIP27.44■■□□□ 1.98
UPF1-205ENST00000598209 BICRAQ9NZM4 1560 aa27.43■■□□□ 1.98
UPF1-205ENST00000598209 SCRIBQ14160 1630 aa27.41■■□□□ 1.98
UPF1-205ENST00000598209 SHROOM4Q9ULL8 1493 aa27.1■■□□□ 1.93
UPF1-205ENST00000598209 DNAJC5BQ9UF47 199 aa26.98■■□□□ 1.91
UPF1-205ENST00000598209 EIF4G1Q04637 1599 aaKnown RBP26.7■■□□□ 1.86
UPF1-205ENST00000598209 CC2D2AQ9P2K1 1620 aa26.61■■□□□ 1.85
UPF1-205ENST00000598209 CECR2Q9BXF3 1484 aa26.41■■□□□ 1.82
UPF1-205ENST00000598209 SMARCA4P51532 1647 aa26.21■■□□□ 1.79
UPF1-205ENST00000598209 BAZ1AQ9NRL2 1556 aaPredicted RBP26.16■■□□□ 1.78
UPF1-205ENST00000598209 ATAD2BQ9ULI0 1458 aa26.04■■□□□ 1.76
UPF1-205ENST00000598209 SMARCA2P51531 1590 aa26.03■■□□□ 1.76
UPF1-205ENST00000598209 NCAPD3P42695 1498 aa26.02■■□□□ 1.76
UPF1-205ENST00000598209 MROH2BQ7Z745 1585 aa26.01■■□□□ 1.75
UPF1-205ENST00000598209 PEG3Q9GZU2 1588 aa25.94■■□□□ 1.74
UPF1-205ENST00000598209 HMGXB3Q12766 1538 aa25.92■■□□□ 1.74
UPF1-205ENST00000598209 BAZ1BQ9UIG0 1483 aaKnown RBP25.84■■□□□ 1.73
UPF1-205ENST00000598209 WIZO95785 1651 aa25.76■■□□□ 1.71
UPF1-205ENST00000598209 RSF1Q96T23 1441 aaPredicted RBP25.68■■□□□ 1.7
UPF1-205ENST00000598209 TOP2AP11388 1531 aaKnown RBP25.46■■□□□ 1.67
UPF1-205ENST00000598209 NESP48681 1621 aa25.44■■□□□ 1.66
UPF1-205ENST00000598209 LAMC3Q9Y6N6 1575 aa25.38■■□□□ 1.65
UPF1-205ENST00000598209 ERCC6Q03468 1493 aa25.34■■□□□ 1.65
UPF1-205ENST00000598209 CADPSQ9ULU8 1353 aa25.27■■□□□ 1.64
UPF1-205ENST00000598209 KIF21AQ7Z4S6 1674 aa25.19■■□□□ 1.62
UPF1-205ENST00000598209 PDS5BQ9NTI5 1447 aa25.18■■□□□ 1.62
UPF1-205ENST00000598209 CCDC88BA6NC98 1476 aa25.15■■□□□ 1.62
UPF1-205ENST00000598209 CFTRP13569 1480 aa25.11■■□□□ 1.61
UPF1-205ENST00000598209 THOC2Q8NI27 1593 aaKnown RBP25.08■■□□□ 1.61
UPF1-205ENST00000598209 CUX2O14529 1486 aa25.08■■□□□ 1.6
UPF1-205ENST00000598209 PRDM2Q13029 1718 aa25.03■■□□□ 1.6
UPF1-205ENST00000598209 SUPT5HO00267 1087 aaKnown RBP25.01■■□□□ 1.59
UPF1-205ENST00000598209 FANCD2Q9BXW9 1451 aa24.99■■□□□ 1.59
UPF1-205ENST00000598209 CEP164Q9UPV0 1460 aa24.97■■□□□ 1.59
UPF1-205ENST00000598209 MRC2Q9UBG0 1479 aa24.94■■□□□ 1.58
UPF1-205ENST00000598209 WDR62O43379 1518 aa24.86■■□□□ 1.57
UPF1-205ENST00000598209 URB2Q14146 1524 aaKnown RBP24.75■■□□□ 1.55
UPF1-205ENST00000598209 TOPBP1Q92547 1522 aa24.6■■□□□ 1.53
UPF1-205ENST00000598209 ABCC8Q09428 1581 aa24.58■■□□□ 1.52
UPF1-205ENST00000598209 DNMBPQ6XZF7 1577 aa24.58■■□□□ 1.52
UPF1-205ENST00000598209 IFT140Q96RY7 1462 aa24.44■■□□□ 1.5
UPF1-205ENST00000598209 CUX1P39880 1505 aa24.4■■□□□ 1.5
UPF1-205ENST00000598209 POLA1P09884 1462 aaPredicted RBP24.38■■□□□ 1.49
UPF1-205ENST00000598209 TARBP1Q13395 1621 aaKnown RBP24.35■■□□□ 1.49
UPF1-205ENST00000598209 ZNF608Q9ULD9 1512 aaPredicted RBP24.34■■□□□ 1.49
UPF1-205ENST00000598209 FGD5Q6ZNL6 1462 aa24.32■■□□□ 1.48
UPF1-205ENST00000598209 DNAJC5Q9H3Z4 198 aa24.31■■□□□ 1.48
UPF1-205ENST00000598209 RAD54L2Q9Y4B4 1467 aa24.28■■□□□ 1.48
UPF1-205ENST00000598209 SOGA1O94964 1423 aa24.27■■□□□ 1.48
UPF1-205ENST00000598209 EIF4G3O43432 1585 aaKnown RBP24.27■■□□□ 1.48
UPF1-205ENST00000598209 WRNQ14191 1432 aaPredicted RBP eCLIP24.22■■□□□ 1.47
UPF1-205ENST00000598209 BIVM-ERCC5R4GMW8 1640 aa24.21■■□□□ 1.47
UPF1-205ENST00000598209 TOP2BQ02880 1626 aa24.2■■□□□ 1.46
UPF1-205ENST00000598209 SYNJ1O43426 1573 aa24.2■■□□□ 1.46
UPF1-205ENST00000598209 AQRO60306 1485 aaKnown RBP eCLIP24.19■■□□□ 1.469e-9■■■■■ 44.1
UPF1-205ENST00000598209 WDR97A6NE52 1622 aa24.17■■□□□ 1.46
UPF1-205ENST00000598209 TDRD9Q8NDG6 1382 aaKnown RBP24.13■■□□□ 1.45
UPF1-205ENST00000598209 ABCA10Q8WWZ4 1543 aa24.09■■□□□ 1.45
UPF1-205ENST00000598209 ABCA5Q8WWZ7 1642 aa24.02■■□□□ 1.44
UPF1-205ENST00000598209 PBRM1Q86U86 1689 aa24.02■■□□□ 1.44
UPF1-205ENST00000598209 OSCARQ8IYS5 282 aa24.01■■□□□ 1.43
UPF1-205ENST00000598209 CHD1O14646 1710 aa24.01■■□□□ 1.43
UPF1-205ENST00000598209 GRIN2BQ13224 1484 aa24■■□□□ 1.43
UPF1-205ENST00000598209 GAPVD1Q14C86 1478 aa24■■□□□ 1.43
UPF1-205ENST00000598209 SNAPC4Q5SXM2 1469 aa23.98■■□□□ 1.43
UPF1-205ENST00000598209 MAGI1Q96QZ7 1491 aaPredicted RBP23.94■■□□□ 1.42
UPF1-205ENST00000598209 FBLN2P98095 1184 aa23.9■■□□□ 1.42
UPF1-205ENST00000598209 SYNJ2O15056 1496 aa23.84■■□□□ 1.41
UPF1-205ENST00000598209 CHMP7Q8WUX9 453 aaPredicted RBP23.82■■□□□ 1.4
UPF1-205ENST00000598209 ERICH3Q5RHP9 1530 aa23.79■■□□□ 1.4
UPF1-205ENST00000598209 ADAMTS12P58397 1594 aa23.79■■□□□ 1.4
UPF1-205ENST00000598209 FHAD1B1AJZ9 1412 aa23.71■■□□□ 1.39
UPF1-205ENST00000598209 KIF27Q86VH2 1401 aa23.71■■□□□ 1.39
UPF1-205ENST00000598209 CLASP1Q7Z460 1538 aa23.69■■□□□ 1.38
UPF1-205ENST00000598209 GRIN2AQ12879 1464 aa23.69■■□□□ 1.38
UPF1-205ENST00000598209 RIMBP3CA6NJZ7 1639 aa23.69■■□□□ 1.38
UPF1-205ENST00000598209 RIMBP3BA6NNM3 1639 aa23.69■■□□□ 1.38
UPF1-205ENST00000598209 RIMBP3Q9UFD9 1639 aa23.69■■□□□ 1.38
UPF1-205ENST00000598209 ARHGEF11O15085 1522 aa23.65■■□□□ 1.38
UPF1-205ENST00000598209 TRIM41Q8WV44 630 aa23.62■■□□□ 1.37
UPF1-205ENST00000598209 IGF1RP08069 1367 aa23.61■■□□□ 1.37
UPF1-205ENST00000598209 CUL7Q14999 1698 aa23.6■■□□□ 1.37
UPF1-205ENST00000598209 CEP170Q5SW79 1584 aa23.6■■□□□ 1.37
UPF1-205ENST00000598209 NUP160Q12769 1436 aa23.58■■□□□ 1.36
UPF1-205ENST00000598209 RUSC2Q8N2Y8 1516 aa23.51■■□□□ 1.35
UPF1-205ENST00000598209 CARMIL1Q5VZK9 1371 aa23.48■■□□□ 1.35
UPF1-205ENST00000598209 ARAP1Q96P48 1450 aa23.46■■□□□ 1.35
UPF1-205ENST00000598209 SHROOM2Q13796 1616 aa23.44■■□□□ 1.34
UPF1-205ENST00000598209 CYB5RLQ6IPT4 315 aa23.41■■□□□ 1.34
UPF1-205ENST00000598209 ERCC6L2Q5T890 1561 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms