RNA–Protein interactions for RNA: ENST00000595803.5

SHKBP1-209, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 773 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-209ENST00000595803 TIAM1Q13009 1591 aa20.11■□□□□ 0.81
SHKBP1-209ENST00000595803 CCDC18Q5T9S5 1454 aa20.1■□□□□ 0.81
SHKBP1-209ENST00000595803 NEO1Q92859 1461 aa20.1■□□□□ 0.81
SHKBP1-209ENST00000595803 PLPPR3Q6T4P5 718 aa20.09■□□□□ 0.81
SHKBP1-209ENST00000595803 TRIM26Q12899 539 aaPredicted RBP20.08■□□□□ 0.81
SHKBP1-209ENST00000595803 CDK11AQ9UQ88 783 aaPredicted RBP20.08■□□□□ 0.81
SHKBP1-209ENST00000595803 NUP153P49790 1475 aaKnown RBP20.06■□□□□ 0.8
SHKBP1-209ENST00000595803 MTUS2Q5JR59 1369 aa20.05■□□□□ 0.8
SHKBP1-209ENST00000595803 LRRC9Q6ZRR7 1453 aa20.05■□□□□ 0.8
SHKBP1-209ENST00000595803 LRRIQ1Q96JM4 1722 aa20.03■□□□□ 0.8
SHKBP1-209ENST00000595803 FANCAO15360 1455 aa20.02■□□□□ 0.8
SHKBP1-209ENST00000595803 CDK13Q14004 1512 aaKnown RBP20.02■□□□□ 0.79
SHKBP1-209ENST00000595803 PLEKHD1A6NEE1 506 aa20.01■□□□□ 0.79
SHKBP1-209ENST00000595803 SIGLEC1Q9BZZ2 1709 aa20.01■□□□□ 0.79
SHKBP1-209ENST00000595803 TTC37Q6PGP7 1564 aa20■□□□□ 0.79
SHKBP1-209ENST00000595803 POGZQ7Z3K3 1410 aa20■□□□□ 0.79
SHKBP1-209ENST00000595803 ATP10BO94823 1461 aa19.99■□□□□ 0.79
SHKBP1-209ENST00000595803 RICTORQ6R327 1708 aa19.99■□□□□ 0.79
SHKBP1-209ENST00000595803 FER1L4A9Z1Z3 1794 aa19.98■□□□□ 0.79
SHKBP1-209ENST00000595803 PREX1Q8TCU6 1659 aa19.97■□□□□ 0.79
SHKBP1-209ENST00000595803 YEATS2Q9ULM3 1422 aa19.97■□□□□ 0.79
SHKBP1-209ENST00000595803 STRCQ7RTU9 1775 aa19.96■□□□□ 0.79
SHKBP1-209ENST00000595803 PCGF6Q9BYE7 350 aa19.96■□□□□ 0.79
SHKBP1-209ENST00000595803 AKNAQ7Z591 1439 aa19.94■□□□□ 0.78
SHKBP1-209ENST00000595803 DENND4BO75064 1496 aaPredicted RBP19.94■□□□□ 0.78
SHKBP1-209ENST00000595803 EHBP1L1Q8N3D4 1523 aa19.93■□□□□ 0.78
SHKBP1-209ENST00000595803 ZMYM4Q5VZL5 1548 aa19.92■□□□□ 0.78
SHKBP1-209ENST00000595803 ZFYVE16Q7Z3T8 1539 aa19.92■□□□□ 0.78
SHKBP1-209ENST00000595803 DMRT2Q9Y5R5 561 aa19.9■□□□□ 0.78
SHKBP1-209ENST00000595803 TROQ12816 1431 aaPredicted RBP19.9■□□□□ 0.78
SHKBP1-209ENST00000595803 MLECQ14165 292 aa19.88■□□□□ 0.77
SHKBP1-209ENST00000595803 SUPT6HQ7KZ85 1726 aaKnown RBP19.88■□□□□ 0.77
SHKBP1-209ENST00000595803 CFAP74Q9C0B2 1584 aa19.86■□□□□ 0.77
SHKBP1-209ENST00000595803 ARHGEF12Q9NZN5 1544 aa19.86■□□□□ 0.77
SHKBP1-209ENST00000595803 NCOA2Q15596 1464 aa19.86■□□□□ 0.77
SHKBP1-209ENST00000595803 LTBP4Q8N2S1 1624 aa19.84■□□□□ 0.77
SHKBP1-209ENST00000595803 IQSEC2Q5JU85 1478 aa19.84■□□□□ 0.77
SHKBP1-209ENST00000595803 UHRF1BP1Q6BDS2 1440 aa19.83■□□□□ 0.76
SHKBP1-209ENST00000595803 PTPRTO14522 1441 aa19.82■□□□□ 0.76
SHKBP1-209ENST00000595803 MAGI2Q86UL8 1455 aa19.81■□□□□ 0.76
SHKBP1-209ENST00000595803 CCNB3Q8WWL7 1395 aa19.8■□□□□ 0.76
SHKBP1-209ENST00000595803 CEBPAP49715 358 aaPredicted RBP19.79■□□□□ 0.76
SHKBP1-209ENST00000595803 RRBP1Q9P2E9 1410 aaKnown RBP19.78■□□□□ 0.76
SHKBP1-209ENST00000595803 FAM50AQ14320 339 aaKnown RBP19.77■□□□□ 0.76
SHKBP1-209ENST00000595803 MYOM3Q5VTT5 1437 aa19.76■□□□□ 0.75
SHKBP1-209ENST00000595803 KIF14Q15058 1648 aa19.75■□□□□ 0.75
SHKBP1-209ENST00000595803 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.73■□□□□ 0.75
SHKBP1-209ENST00000595803 C9orf84Q5VXU9 1444 aa19.73■□□□□ 0.75
SHKBP1-209ENST00000595803 FGD6Q6ZV73 1430 aa19.73■□□□□ 0.75
SHKBP1-209ENST00000595803 CFDP1Q9UEE9 299 aaPredicted RBP19.72■□□□□ 0.75
SHKBP1-209ENST00000595803 MIA2Q96PC5 1412 aa19.71■□□□□ 0.75
SHKBP1-209ENST00000595803 ATP10AO60312 1499 aa19.71■□□□□ 0.75
SHKBP1-209ENST00000595803 ITGAEP38570 1179 aa19.69■□□□□ 0.74
SHKBP1-209ENST00000595803 GPATCH8Q9UKJ3 1502 aaKnown RBP19.69■□□□□ 0.74
SHKBP1-209ENST00000595803 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.69■□□□□ 0.74
SHKBP1-209ENST00000595803 ZNF777Q9ULD5 760 aaPredicted RBP19.68■□□□□ 0.74
SHKBP1-209ENST00000595803 MED1Q15648 1581 aaPredicted RBP19.68■□□□□ 0.74
SHKBP1-209ENST00000595803 SETD1BQ9UPS6 1966 aaKnown RBP19.67■□□□□ 0.74
SHKBP1-209ENST00000595803 NCOA1Q15788 1441 aa19.66■□□□□ 0.74
SHKBP1-209ENST00000595803 SCAPERQ9BY12 1400 aa19.65■□□□□ 0.74
SHKBP1-209ENST00000595803 PTPN23Q9H3S7 1636 aa19.65■□□□□ 0.74
SHKBP1-209ENST00000595803 UBAP1LF5GYI3 381 aa19.64■□□□□ 0.73
SHKBP1-209ENST00000595803 C3P01024 1663 aa19.64■□□□□ 0.73
SHKBP1-209ENST00000595803 ITSN2Q9NZM3 1697 aa19.64■□□□□ 0.73
SHKBP1-209ENST00000595803 TCOF1Q13428 1488 aaKnown RBP19.62■□□□□ 0.73
SHKBP1-209ENST00000595803 ZNF644Q9H582 1327 aaPredicted RBP19.61■□□□□ 0.73
SHKBP1-209ENST00000595803 CDC42BPAQ5VT25 1732 aa19.6■□□□□ 0.73
SHKBP1-209ENST00000595803 EFCAB2Q5VUJ9 269 aa19.6■□□□□ 0.73
SHKBP1-209ENST00000595803 PLCH2O75038 1416 aa19.59■□□□□ 0.73
SHKBP1-209ENST00000595803 ZNF335Q9H4Z2 1342 aaPredicted RBP19.57■□□□□ 0.72
SHKBP1-209ENST00000595803 TRAPPC8Q9Y2L5 1435 aa19.56■□□□□ 0.72
SHKBP1-209ENST00000595803 MYO5CQ9NQX4 1742 aa19.56■□□□□ 0.72
SHKBP1-209ENST00000595803 ARHGAP5Q13017 1502 aa19.56■□□□□ 0.72
SHKBP1-209ENST00000595803 CAMSAP1Q5T5Y3 1602 aa19.55■□□□□ 0.72
SHKBP1-209ENST00000595803 PREX2Q70Z35 1606 aa19.54■□□□□ 0.72
SHKBP1-209ENST00000595803 CAMSAP2Q08AD1 1489 aa19.54■□□□□ 0.72
SHKBP1-209ENST00000595803 CDC42BPBQ9Y5S2 1711 aa19.54■□□□□ 0.72
SHKBP1-209ENST00000595803 DIP2CQ9Y2E4 1556 aa19.53■□□□□ 0.72
SHKBP1-209ENST00000595803 RSPH4AQ5TD94 716 aa19.53■□□□□ 0.72
SHKBP1-209ENST00000595803 ZNF518AQ6AHZ1 1483 aa19.53■□□□□ 0.72
SHKBP1-209ENST00000595803 KDM5CP41229 1560 aa19.53■□□□□ 0.72
SHKBP1-209ENST00000595803 HNRNPMP52272 730 aaKnown RBP eCLIP19.52■□□□□ 0.72
SHKBP1-209ENST00000595803 REREQ9P2R6 1566 aa19.52■□□□□ 0.71
SHKBP1-209ENST00000595803 CHIC2Q9UKJ5 165 aa19.5■□□□□ 0.71
SHKBP1-209ENST00000595803 TSPY4P0CV99 314 aa19.49■□□□□ 0.71
SHKBP1-209ENST00000595803 TSPY10P0CW01 314 aa19.49■□□□□ 0.71
SHKBP1-209ENST00000595803 HSPA1LP34931 641 aa19.49■□□□□ 0.71
SHKBP1-209ENST00000595803 PLEKHH2Q8IVE3 1493 aa19.48■□□□□ 0.71
SHKBP1-209ENST00000595803 ABCA6Q8N139 1617 aa19.48■□□□□ 0.71
SHKBP1-209ENST00000595803 ABCC5O15440 1437 aa19.48■□□□□ 0.71
SHKBP1-209ENST00000595803 DAPK1P53355 1430 aa19.48■□□□□ 0.71
SHKBP1-209ENST00000595803 PTPRKQ15262 1439 aa19.47■□□□□ 0.71
SHKBP1-209ENST00000595803 AGLP35573 1532 aa19.46■□□□□ 0.71
SHKBP1-209ENST00000595803 SCAF1Q9H7N4 1312 aaKnown RBP19.46■□□□□ 0.71
SHKBP1-209ENST00000595803 NCKAP5LQ9HCH0 1330 aa19.46■□□□□ 0.71
SHKBP1-209ENST00000595803 SAMD9LQ8IVG5 1584 aa19.45■□□□□ 0.7
SHKBP1-209ENST00000595803 KIAA1107Q9UPP5 1409 aa19.45■□□□□ 0.7
SHKBP1-209ENST00000595803 PHF23Q9BUL5 403 aaPredicted RBP19.45■□□□□ 0.7
SHKBP1-209ENST00000595803 ESF1Q9H501 851 aaKnown RBP19.45■□□□□ 0.7
SHKBP1-209ENST00000595803 DNMT1P26358 1616 aaKnown RBP19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms