RNA–Protein interactions for RNA: ENST00000595756.1

HOMER3-208, Transcript of homer scaffold protein 3, human

TSL 2

Gene HOMER3, Length 570 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HOMER3-208	ENST00000595756	POGZ	Q7Z3K3	1410 aa		29.28	■■■□□ 2.28
HOMER3-208	ENST00000595756	MAGI2	Q86UL8	1455 aa		29.28	■■■□□ 2.28
HOMER3-208	ENST00000595756	MADD	Q8WXG6	1647 aa		29.27	■■■□□ 2.28
HOMER3-208	ENST00000595756	PTPRM	P28827	1452 aa		29.24	■■■□□ 2.27
HOMER3-208	ENST00000595756	FYCO1	Q9BQS8	1478 aa		29.24	■■■□□ 2.27
HOMER3-208	ENST00000595756	SCAPER	Q9BY12	1400 aa		29.22	■■■□□ 2.27
HOMER3-208	ENST00000595756	ARHGAP5	Q13017	1502 aa		29.2	■■■□□ 2.27
HOMER3-208	ENST00000595756	SIGLEC1	Q9BZZ2	1709 aa		29.2	■■■□□ 2.26
HOMER3-208	ENST00000595756	PREX2	Q70Z35	1606 aa		29.2	■■■□□ 2.26
HOMER3-208	ENST00000595756	YEATS2	Q9ULM3	1422 aa		29.2	■■■□□ 2.26
HOMER3-208	ENST00000595756	CDC42BPB	Q9Y5S2	1711 aa		29.19	■■■□□ 2.26
HOMER3-208	ENST00000595756	EFCAB2	Q5VUJ9	269 aa		29.17	■■■□□ 2.26
HOMER3-208	ENST00000595756	ARID4B	Q4LE39	1312 aa	Predicted RBP	29.17	■■■□□ 2.26
HOMER3-208	ENST00000595756	RIMS1	Q86UR5	1692 aa	Known RBP	29.15	■■■□□ 2.26
HOMER3-208	ENST00000595756	KDM5C	P41229	1560 aa		29.15	■■■□□ 2.26
HOMER3-208	ENST00000595756	ZNF518A	Q6AHZ1	1483 aa		29.15	■■■□□ 2.26
HOMER3-208	ENST00000595756	CDC42BPA	Q5VT25	1732 aa		29.1	■■■□□ 2.25
HOMER3-208	ENST00000595756	ABCC1	P33527	1531 aa		29.09	■■■□□ 2.25
HOMER3-208	ENST00000595756	C9orf84	Q5VXU9	1444 aa		29.08	■■■□□ 2.25
HOMER3-208	ENST00000595756	FER1L4	A9Z1Z3	1794 aa		29.07	■■■□□ 2.24
HOMER3-208	ENST00000595756	ITSN2	Q9NZM3	1697 aa		29.07	■■■□□ 2.24
HOMER3-208	ENST00000595756	ATP10A	O60312	1499 aa		29.06	■■■□□ 2.24
HOMER3-208	ENST00000595756	RERE	Q9P2R6	1566 aa		29.01	■■■□□ 2.24
HOMER3-208	ENST00000595756	DIP2C	Q9Y2E4	1556 aa		29.01	■■■□□ 2.24
HOMER3-208	ENST00000595756	ARHGEF12	Q9NZN5	1544 aa		29	■■■□□ 2.23
HOMER3-208	ENST00000595756	ABCA6	Q8N139	1617 aa		28.98	■■■□□ 2.23
HOMER3-208	ENST00000595756	MLH3	Q9UHC1	1453 aa		28.97	■■■□□ 2.23
HOMER3-208	ENST00000595756	LMTK3	Q96Q04	1460 aa		28.97	■■■□□ 2.23
HOMER3-208	ENST00000595756	SAMD9L	Q8IVG5	1584 aa		28.93	■■■□□ 2.22
HOMER3-208	ENST00000595756	AFAP1	Q8N556	730 aa		28.93	■■■□□ 2.22
HOMER3-208	ENST00000595756	TRAPPC8	Q9Y2L5	1435 aa		28.92	■■■□□ 2.22
HOMER3-208	ENST00000595756	CEP162	Q5TB80	1403 aa		28.91	■■■□□ 2.22
HOMER3-208	ENST00000595756	GPATCH8	Q9UKJ3	1502 aa	Known RBP	28.9	■■■□□ 2.22
HOMER3-208	ENST00000595756	KIDINS220	Q9ULH0	1771 aa		28.9	■■■□□ 2.22
HOMER3-208	ENST00000595756	EHBP1L1	Q8N3D4	1523 aa		28.88	■■■□□ 2.21
HOMER3-208	ENST00000595756	SYCP2	Q9BX26	1530 aa		28.88	■■■□□ 2.21
HOMER3-208	ENST00000595756	MLEC	Q14165	292 aa		28.87	■■■□□ 2.21
HOMER3-208	ENST00000595756	AGL	P35573	1532 aa		28.86	■■■□□ 2.21
HOMER3-208	ENST00000595756	MTUS2	Q5JR59	1369 aa		28.84	■■■□□ 2.21
HOMER3-208	ENST00000595756	PLEKHH2	Q8IVE3	1493 aa		28.82	■■■□□ 2.2
HOMER3-208	ENST00000595756	PREX1	Q8TCU6	1659 aa		28.81	■■■□□ 2.2
HOMER3-208	ENST00000595756	TIAM1	Q13009	1591 aa		28.8	■■■□□ 2.2
HOMER3-208	ENST00000595756	MYT1L	Q9UL68	1186 aa		28.8	■■■□□ 2.2
HOMER3-208	ENST00000595756	KIAA1107	Q9UPP5	1409 aa		28.79	■■■□□ 2.2
HOMER3-208	ENST00000595756	CCNB3	Q8WWL7	1395 aa		28.79	■■■□□ 2.2
HOMER3-208	ENST00000595756	INO80	Q9ULG1	1556 aa	Predicted RBP	28.78	■■■□□ 2.2
HOMER3-208	ENST00000595756	ILDR1	Q86SU0	546 aa	Predicted RBP	28.77	■■■□□ 2.2
HOMER3-208	ENST00000595756	ATP7A	Q04656	1500 aa		28.74	■■■□□ 2.19
HOMER3-208	ENST00000595756	ZNF777	Q9ULD5	760 aa	Predicted RBP	28.74	■■■□□ 2.19
HOMER3-208	ENST00000595756	PLPPR3	Q6T4P5	718 aa		28.73	■■■□□ 2.19
HOMER3-208	ENST00000595756	CFDP1	Q9UEE9	299 aa	Predicted RBP	28.72	■■■□□ 2.19
HOMER3-208	ENST00000595756	C3	P01024	1663 aa		28.72	■■■□□ 2.19
HOMER3-208	ENST00000595756	PLXNC1	O60486	1568 aa		28.71	■■■□□ 2.19
HOMER3-208	ENST00000595756	SUPT6H	Q7KZ85	1726 aa	Known RBP	28.7	■■■□□ 2.19
HOMER3-208	ENST00000595756	SPAG9	O60271	1321 aa	Known RBP	28.68	■■■□□ 2.18
HOMER3-208	ENST00000595756	MROH2A	A6NES4	1674 aa		28.66	■■■□□ 2.18
HOMER3-208	ENST00000595756	HNRNPM	P52272	730 aa	Known RBP eCLIP	28.65	■■■□□ 2.18
HOMER3-208	ENST00000595756	HSPA2	P54652	639 aa		28.65	■■■□□ 2.18
HOMER3-208	ENST00000595756	CNTLN	Q9NXG0	1405 aa		28.65	■■■□□ 2.18
HOMER3-208	ENST00000595756	SETD1B	Q9UPS6	1966 aa	Known RBP	28.64	■■■□□ 2.18
HOMER3-208	ENST00000595756	ADGB	Q8N7X0	1667 aa		28.64	■■■□□ 2.18
HOMER3-208	ENST00000595756	VPS8	Q8N3P4	1428 aa		28.62	■■■□□ 2.17
HOMER3-208	ENST00000595756	UHRF1BP1	Q6BDS2	1440 aa		28.61	■■■□□ 2.17
HOMER3-208	ENST00000595756	NCOA2	Q15596	1464 aa		28.61	■■■□□ 2.17
HOMER3-208	ENST00000595756	MBD5	Q9P267	1494 aa		28.61	■■■□□ 2.17
HOMER3-208	ENST00000595756	CEBPA	P49715	358 aa	Predicted RBP	28.61	■■■□□ 2.17
HOMER3-208	ENST00000595756	A2M	P01023	1474 aa		28.59	■■■□□ 2.17
HOMER3-208	ENST00000595756	ESF1	Q9H501	851 aa	Known RBP	28.57	■■■□□ 2.16
HOMER3-208	ENST00000595756	CAMSAP2	Q08AD1	1489 aa		28.54	■■■□□ 2.16
HOMER3-208	ENST00000595756	RTEL1-TNFRSF6B	F6WH68	1400 aa		28.54	■■■□□ 2.16
HOMER3-208	ENST00000595756	ZNF644	Q9H582	1327 aa	Predicted RBP	28.53	■■■□□ 2.16
HOMER3-208	ENST00000595756	CCDC141	Q6ZP82	1450 aa		28.53	■■■□□ 2.16
HOMER3-208	ENST00000595756	STRC	Q7RTU9	1775 aa		28.52	■■■□□ 2.16
HOMER3-208	ENST00000595756	CLTC	Q00610	1675 aa	Known RBP	28.52	■■■□□ 2.16
HOMER3-208	ENST00000595756	MAP3K1	Q13233	1512 aa		28.52	■■■□□ 2.16
HOMER3-208	ENST00000595756	LRRC9	Q6ZRR7	1453 aa		28.52	■■■□□ 2.16
HOMER3-208	ENST00000595756	LOC105371045	A0A1W2PR82	267 aa		28.49	■■■□□ 2.15
HOMER3-208	ENST00000595756	NPAT	Q14207	1427 aa		28.49	■■■□□ 2.15
HOMER3-208	ENST00000595756	ARHGEF5	Q12774	1597 aa		28.49	■■■□□ 2.15
HOMER3-208	ENST00000595756	FBXO41	Q8TF61	875 aa		28.48	■■■□□ 2.15
HOMER3-208	ENST00000595756	ZNF142	P52746	1687 aa	Predicted RBP	28.42	■■■□□ 2.14
HOMER3-208	ENST00000595756	ZMYM3	Q14202	1370 aa		28.42	■■■□□ 2.14
HOMER3-208	ENST00000595756	MYO3A	Q8NEV4	1616 aa		28.41	■■■□□ 2.14
HOMER3-208	ENST00000595756	FAM135A	Q9P2D6	1515 aa		28.4	■■■□□ 2.14
HOMER3-208	ENST00000595756	DHX29	Q7Z478	1369 aa	Known RBP	28.39	■■■□□ 2.14
HOMER3-208	ENST00000595756	RSPH4A	Q5TD94	716 aa		28.39	■■■□□ 2.14
HOMER3-208	ENST00000595756	PPP6R1	Q9UPN7	881 aa		28.38	■■■□□ 2.13
HOMER3-208	ENST00000595756	DMRT2	Q9Y5R5	561 aa		28.36	■■■□□ 2.13
HOMER3-208	ENST00000595756	MAST1	Q9Y2H9	1570 aa		28.36	■■■□□ 2.13
HOMER3-208	ENST00000595756	PTPRK	Q15262	1439 aa		28.35	■■■□□ 2.13
HOMER3-208	ENST00000595756	NCOA1	Q15788	1441 aa		28.35	■■■□□ 2.13
HOMER3-208	ENST00000595756	GGT6	Q6P531	493 aa		28.34	■■■□□ 2.13
HOMER3-208	ENST00000595756	PTPRT	O14522	1441 aa		28.34	■■■□□ 2.13
HOMER3-208	ENST00000595756	MYOM3	Q5VTT5	1437 aa		28.32	■■■□□ 2.12
HOMER3-208	ENST00000595756	MIA2	Q96PC5	1412 aa		28.32	■■■□□ 2.12
HOMER3-208	ENST00000595756	KDM5D	Q9BY66	1539 aa		28.32	■■■□□ 2.12
HOMER3-208	ENST00000595756	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	28.32	■■■□□ 2.12
HOMER3-208	ENST00000595756	CAMSAP1	Q5T5Y3	1602 aa		28.31	■■■□□ 2.12
HOMER3-208	ENST00000595756	KANK4	Q5T7N3	995 aa	Predicted RBP	28.28	■■■□□ 2.12
HOMER3-208	ENST00000595756	CERK	Q8TCT0	537 aa		28.27	■■■□□ 2.12

Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms