RNA–Protein interactions for RNA: ENST00000591877.1

VMP1-213, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 791 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-213ENST00000591877 HOXB1P14653 301 aaPredicted RBP14.74□□□□□ -0.05
VMP1-213ENST00000591877 SPOCK2Q92563 424 aa14.73□□□□□ -0.05
VMP1-213ENST00000591877 ERBB3P21860 1342 aa14.72□□□□□ -0.05
VMP1-213ENST00000591877 IFNLR1Q8IU57 520 aaPredicted RBP14.7□□□□□ -0.06
VMP1-213ENST00000591877 DOK7Q18PE1 504 aa14.69□□□□□ -0.06
VMP1-213ENST00000591877 EFCAB3Q8N7B9 438 aa14.64□□□□□ -0.07
VMP1-213ENST00000591877 VARS2Q5ST30 1063 aaKnown RBP14.62□□□□□ -0.07
VMP1-213ENST00000591877 RNF166Q96A37 237 aaPredicted RBP14.6□□□□□ -0.07
VMP1-213ENST00000591877 RIMBP2O15034 1052 aa14.59□□□□□ -0.07
VMP1-213ENST00000591877 TMEM92Q6UXU6 159 aa14.56□□□□□ -0.08
VMP1-213ENST00000591877 PLCB2Q00722 1185 aa14.54□□□□□ -0.08
VMP1-213ENST00000591877 MICALL2Q8IY33 904 aa14.53□□□□□ -0.08
VMP1-213ENST00000591877 MYT1LQ9UL68 1186 aa14.52□□□□□ -0.09
VMP1-213ENST00000591877 ZNF687Q8N1G0 1237 aa14.48□□□□□ -0.09
VMP1-213ENST00000591877 GPR153Q6NV75 609 aa14.46□□□□□ -0.09
VMP1-213ENST00000591877 ZSWIM6Q9HCJ5 1215 aa14.46□□□□□ -0.09
VMP1-213ENST00000591877 SMARCA4P51532 1647 aa14.44□□□□□ -0.1
VMP1-213ENST00000591877 PKD2Q13563 968 aa14.43□□□□□ -0.1
VMP1-213ENST00000591877 MS4A4AQ96JQ5 239 aa14.43□□□□□ -0.1
VMP1-213ENST00000591877 TRIM41Q8WV44 630 aa14.42□□□□□ -0.1
VMP1-213ENST00000591877 NCAPD3P42695 1498 aa14.42□□□□□ -0.1
VMP1-213ENST00000591877 SOX12O15370 315 aa14.4□□□□□ -0.1
VMP1-213ENST00000591877 ARSIQ5FYB1 569 aa14.4□□□□□ -0.1
VMP1-213ENST00000591877 PHF8Q9UPP1 1060 aa14.4□□□□□ -0.1
VMP1-213ENST00000591877 ATAD2BQ9ULI0 1458 aa14.39□□□□□ -0.11
VMP1-213ENST00000591877 ANKRD13DQ6ZTN6 518 aa14.37□□□□□ -0.11
VMP1-213ENST00000591877 BAZ1AQ9NRL2 1556 aaPredicted RBP14.36□□□□□ -0.11
VMP1-213ENST00000591877 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.36□□□□□ -0.11
VMP1-213ENST00000591877 KHSRPQ92945 711 aaKnown RBP eCLIP14.36□□□□□ -0.111e-7■■■■□ 24
VMP1-213ENST00000591877 ZFP91Q96JP5 570 aaPredicted RBP14.36□□□□□ -0.11
VMP1-213ENST00000591877 SMARCA2P51531 1590 aa14.34□□□□□ -0.11
VMP1-213ENST00000591877 RIOK3O14730 519 aaKnown RBP14.34□□□□□ -0.11
VMP1-213ENST00000591877 RNF25Q96BH1 459 aaPredicted RBP14.34□□□□□ -0.11
VMP1-213ENST00000591877 HMGXB3Q12766 1538 aa14.32□□□□□ -0.12
VMP1-213ENST00000591877 MROH2BQ7Z745 1585 aa14.3□□□□□ -0.12
VMP1-213ENST00000591877 PTGER2P43116 358 aa14.3□□□□□ -0.12
VMP1-213ENST00000591877 PEG3Q9GZU2 1588 aa14.3□□□□□ -0.12
VMP1-213ENST00000591877 ZNF316A6NFI3 1004 aaPredicted RBP14.29□□□□□ -0.12
VMP1-213ENST00000591877 VGFO15240 615 aaPredicted RBP14.27□□□□□ -0.13
VMP1-213ENST00000591877 HAP1P54257 671 aaPredicted RBP14.25□□□□□ -0.13
VMP1-213ENST00000591877 BAZ1BQ9UIG0 1483 aaKnown RBP14.25□□□□□ -0.13
VMP1-213ENST00000591877 LSM11P83369 360 aaKnown RBP eCLIP14.23□□□□□ -0.13
VMP1-213ENST00000591877 NLRP6P59044 892 aa14.2□□□□□ -0.14
VMP1-213ENST00000591877 ECM2O94769 699 aaPredicted RBP14.18□□□□□ -0.14
VMP1-213ENST00000591877 VSIG10Q8N0Z9 540 aa14.18□□□□□ -0.14
VMP1-213ENST00000591877 NESP48681 1621 aa14.17□□□□□ -0.14
VMP1-213ENST00000591877 NUDT7P0C024 238 aa14.17□□□□□ -0.14
VMP1-213ENST00000591877 FBXO22Q8NEZ5 403 aa14.17□□□□□ -0.14
VMP1-213ENST00000591877 BBXQ8WY36 941 aaPredicted RBP14.17□□□□□ -0.14
VMP1-213ENST00000591877 WIZO95785 1651 aa14.15□□□□□ -0.14
VMP1-213ENST00000591877 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.15□□□□□ -0.14
VMP1-213ENST00000591877 BCL11BQ9C0K0 894 aaPredicted RBP14.14□□□□□ -0.15
VMP1-213ENST00000591877 AXIN2Q9Y2T1 843 aa14.14□□□□□ -0.15
VMP1-213ENST00000591877 C2orf72A6NCS6 295 aa14.12□□□□□ -0.15
VMP1-213ENST00000591877 POTEEQ6S8J3 1075 aa14.12□□□□□ -0.15
VMP1-213ENST00000591877 ERCC6Q03468 1493 aa14.12□□□□□ -0.15
VMP1-213ENST00000591877 LHX6Q9UPM6 363 aa14.11□□□□□ -0.15
VMP1-213ENST00000591877 KIF3CO14782 793 aa14.1□□□□□ -0.15
VMP1-213ENST00000591877 STK24Q9Y6E0 443 aa14.1□□□□□ -0.15
VMP1-213ENST00000591877 BCANQ96GW7 911 aa14.09□□□□□ -0.15
VMP1-213ENST00000591877 MFRPQ9BY79 579 aa14.09□□□□□ -0.15
VMP1-213ENST00000591877 PBX2P40425 430 aa14.07□□□□□ -0.16
VMP1-213ENST00000591877 LAMC3Q9Y6N6 1575 aa14.07□□□□□ -0.16
VMP1-213ENST00000591877 CUX2O14529 1486 aa14.06□□□□□ -0.16
VMP1-213ENST00000591877 PLA2G2EQ9NZK7 142 aa14.06□□□□□ -0.16
VMP1-213ENST00000591877 PCDHGA4Q9Y5G9 962 aa14.06□□□□□ -0.16
VMP1-213ENST00000591877 RSF1Q96T23 1441 aaPredicted RBP14.04□□□□□ -0.16
VMP1-213ENST00000591877 KIF21AQ7Z4S6 1674 aa14.01□□□□□ -0.17
VMP1-213ENST00000591877 THOC2Q8NI27 1593 aaKnown RBP14□□□□□ -0.17
VMP1-213ENST00000591877 HCSTQ9UBK5 93 aa14□□□□□ -0.17
VMP1-213ENST00000591877 TAOK2Q9UL54 1235 aa14□□□□□ -0.17
VMP1-213ENST00000591877 STK25O00506 426 aa13.99□□□□□ -0.17
VMP1-213ENST00000591877 RGL2O15211 777 aa13.99□□□□□ -0.17
VMP1-213ENST00000591877 SLC34A2O95436 690 aa13.98□□□□□ -0.17
VMP1-213ENST00000591877 CADPSQ9ULU8 1353 aa13.97□□□□□ -0.17
VMP1-213ENST00000591877 ADGRD1Q6QNK2 874 aa13.96□□□□□ -0.17
VMP1-213ENST00000591877 PAXIP1Q6ZW49 1069 aaPredicted RBP13.96□□□□□ -0.17
VMP1-213ENST00000591877 TMC2Q8TDI7 906 aa13.96□□□□□ -0.17
VMP1-213ENST00000591877 TOP2AP11388 1531 aaKnown RBP13.95□□□□□ -0.18
VMP1-213ENST00000591877 PDS5BQ9NTI5 1447 aa13.94□□□□□ -0.18
VMP1-213ENST00000591877 ARHGAP33O14559 1287 aa13.93□□□□□ -0.18
VMP1-213ENST00000591877 SPRYD3Q8NCJ5 442 aa13.9□□□□□ -0.18
VMP1-213ENST00000591877 DNAJC5Q9H3Z4 198 aa13.9□□□□□ -0.18
VMP1-213ENST00000591877 CFAP44Q96MT7 982 aa13.89□□□□□ -0.19
VMP1-213ENST00000591877 DMRTA1Q5VZB9 504 aa13.88□□□□□ -0.19
VMP1-213ENST00000591877 PSEN2P49810 448 aa13.87□□□□□ -0.19
VMP1-213ENST00000591877 KDM2AQ9Y2K7 1162 aa13.86□□□□□ -0.19
VMP1-213ENST00000591877 CFTRP13569 1480 aa13.86□□□□□ -0.19
VMP1-213ENST00000591877 PSDA5PKW4 1024 aaPredicted RBP13.84□□□□□ -0.19
VMP1-213ENST00000591877 PPP1R37O75864 691 aa13.84□□□□□ -0.19
VMP1-213ENST00000591877 MRC2Q9UBG0 1479 aa13.84□□□□□ -0.19
VMP1-213ENST00000591877 HRO43593 1189 aa13.83□□□□□ -0.2
VMP1-213ENST00000591877 WDR62O43379 1518 aa13.82□□□□□ -0.2
VMP1-213ENST00000591877 KDM4FA0A1W2PPD8 638 aa13.82□□□□□ -0.2
VMP1-213ENST00000591877 CHGAP10645 457 aaKnown RBP13.82□□□□□ -0.2
VMP1-213ENST00000591877 KCTD12Q96CX2 325 aaKnown RBP13.82□□□□□ -0.2
VMP1-213ENST00000591877 FANCD2Q9BXW9 1451 aa13.81□□□□□ -0.2
VMP1-213ENST00000591877 TK2O00142 265 aa13.81□□□□□ -0.2
VMP1-213ENST00000591877 CEP164Q9UPV0 1460 aa13.8□□□□□ -0.2
VMP1-213ENST00000591877 CCDC88BA6NC98 1476 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms