RNA–Protein interactions for RNA: ENST00000585428.1

SDF2-202, Transcript of stromal cell derived factor 2, humanhuman

TSL 1 (best)

Gene SDF2, Length 924 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-202ENST00000585428 LMTK3Q96Q04 1460 aa23.91■■□□□ 1.42
SDF2-202ENST00000585428 ZFYVE16Q7Z3T8 1539 aa23.89■■□□□ 1.41
SDF2-202ENST00000585428 PCF11O94913 1555 aaKnown RBP23.88■■□□□ 1.41
SDF2-202ENST00000585428 MLECQ14165 292 aa23.87■■□□□ 1.41
SDF2-202ENST00000585428 HECW1Q76N89 1606 aa23.87■■□□□ 1.41
SDF2-202ENST00000585428 ATP10AO60312 1499 aa23.84■■□□□ 1.41
SDF2-202ENST00000585428 HSPA2P54652 639 aa23.84■■□□□ 1.41
SDF2-202ENST00000585428 AFAP1Q8N556 730 aa23.84■■□□□ 1.41
SDF2-202ENST00000585428 PLPPR3Q6T4P5 718 aa23.83■■□□□ 1.41
SDF2-202ENST00000585428 SIGLEC1Q9BZZ2 1709 aa23.83■■□□□ 1.41
SDF2-202ENST00000585428 TROQ12816 1431 aaPredicted RBP23.83■■□□□ 1.4
SDF2-202ENST00000585428 RIMS1Q86UR5 1692 aaKnown RBP23.82■■□□□ 1.4
SDF2-202ENST00000585428 PHF23Q9BUL5 403 aaPredicted RBP23.79■■□□□ 1.4
SDF2-202ENST00000585428 C9orf84Q5VXU9 1444 aa23.76■■□□□ 1.39
SDF2-202ENST00000585428 CLIP1P30622 1438 aa23.76■■□□□ 1.39
SDF2-202ENST00000585428 KIF14Q15058 1648 aa23.75■■□□□ 1.39
SDF2-202ENST00000585428 ZNF518AQ6AHZ1 1483 aa23.75■■□□□ 1.39
SDF2-202ENST00000585428 CEBPAP49715 358 aaPredicted RBP23.74■■□□□ 1.39
SDF2-202ENST00000585428 ARHGEF12Q9NZN5 1544 aa23.74■■□□□ 1.39
SDF2-202ENST00000585428 MYO5CQ9NQX4 1742 aa23.72■■□□□ 1.39
SDF2-202ENST00000585428 ARHGAP5Q13017 1502 aa23.71■■□□□ 1.39
SDF2-202ENST00000585428 CASKIN1Q8WXD9 1431 aa23.7■■□□□ 1.38
SDF2-202ENST00000585428 MYT1LQ9UL68 1186 aa23.68■■□□□ 1.38
SDF2-202ENST00000585428 KDM5CP41229 1560 aa23.68■■□□□ 1.38
SDF2-202ENST00000585428 MLH3Q9UHC1 1453 aa23.67■■□□□ 1.38
SDF2-202ENST00000585428 TRAPPC8Q9Y2L5 1435 aa23.65■■□□□ 1.38
SDF2-202ENST00000585428 LRRIQ1Q96JM4 1722 aa23.64■■□□□ 1.38
SDF2-202ENST00000585428 CERKQ8TCT0 537 aa23.64■■□□□ 1.37
SDF2-202ENST00000585428 FER1L4A9Z1Z3 1794 aa23.63■■□□□ 1.37
SDF2-202ENST00000585428 CCDC18Q5T9S5 1454 aa23.62■■□□□ 1.37
SDF2-202ENST00000585428 CDC42BPBQ9Y5S2 1711 aa23.61■■□□□ 1.37
SDF2-202ENST00000585428 REREQ9P2R6 1566 aa23.58■■□□□ 1.37
SDF2-202ENST00000585428 DIP2CQ9Y2E4 1556 aa23.58■■□□□ 1.37
SDF2-202ENST00000585428 DMRT2Q9Y5R5 561 aa23.58■■□□□ 1.37
SDF2-202ENST00000585428 AGLP35573 1532 aa23.56■■□□□ 1.36
SDF2-202ENST00000585428 ABCC1P33527 1531 aa23.54■■□□□ 1.36
SDF2-202ENST00000585428 ZNF777Q9ULD5 760 aaPredicted RBP23.54■■□□□ 1.36
SDF2-202ENST00000585428 PREX2Q70Z35 1606 aa23.53■■□□□ 1.36
SDF2-202ENST00000585428 HNRNPMP52272 730 aaKnown RBP eCLIP23.53■■□□□ 1.36
SDF2-202ENST00000585428 ESF1Q9H501 851 aaKnown RBP23.53■■□□□ 1.36
SDF2-202ENST00000585428 FYCO1Q9BQS8 1478 aa23.53■■□□□ 1.36
SDF2-202ENST00000585428 UHRF1BP1Q6BDS2 1440 aa23.52■■□□□ 1.36
SDF2-202ENST00000585428 ABCA6Q8N139 1617 aa23.51■■□□□ 1.35
SDF2-202ENST00000585428 GPATCH8Q9UKJ3 1502 aaKnown RBP23.51■■□□□ 1.35
SDF2-202ENST00000585428 PREX1Q8TCU6 1659 aa23.5■■□□□ 1.35
SDF2-202ENST00000585428 SETD1BQ9UPS6 1966 aaKnown RBP23.49■■□□□ 1.35
SDF2-202ENST00000585428 CFDP1Q9UEE9 299 aaPredicted RBP23.47■■□□□ 1.35
SDF2-202ENST00000585428 SPAG9O60271 1321 aaKnown RBP23.47■■□□□ 1.35
SDF2-202ENST00000585428 KIDINS220Q9ULH0 1771 aa23.47■■□□□ 1.35
SDF2-202ENST00000585428 CDC42BPAQ5VT25 1732 aa23.45■■□□□ 1.34
SDF2-202ENST00000585428 ITSN2Q9NZM3 1697 aa23.45■■□□□ 1.34
SDF2-202ENST00000585428 KIAA1107Q9UPP5 1409 aa23.45■■□□□ 1.34
SDF2-202ENST00000585428 CNTLNQ9NXG0 1405 aa23.44■■□□□ 1.34
SDF2-202ENST00000585428 STRCQ7RTU9 1775 aa23.44■■□□□ 1.34
SDF2-202ENST00000585428 SAMD9LQ8IVG5 1584 aa23.44■■□□□ 1.34
SDF2-202ENST00000585428 SENP3Q9H4L4 574 aaPredicted RBP23.43■■□□□ 1.34
SDF2-202ENST00000585428 ZMYM3Q14202 1370 aa23.42■■□□□ 1.34
SDF2-202ENST00000585428 PTPRTO14522 1441 aa23.42■■□□□ 1.34
SDF2-202ENST00000585428 CCNB3Q8WWL7 1395 aa23.41■■□□□ 1.34
SDF2-202ENST00000585428 C3P01024 1663 aa23.41■■□□□ 1.34
SDF2-202ENST00000585428 SYCP2Q9BX26 1530 aa23.38■■□□□ 1.33
SDF2-202ENST00000585428 PLEKHH2Q8IVE3 1493 aa23.37■■□□□ 1.33
SDF2-202ENST00000585428 MTUS2Q5JR59 1369 aa23.37■■□□□ 1.33
SDF2-202ENST00000585428 ZNF644Q9H582 1327 aaPredicted RBP23.36■■□□□ 1.33
SDF2-202ENST00000585428 NPATQ14207 1427 aa23.36■■□□□ 1.33
SDF2-202ENST00000585428 PPP6R1Q9UPN7 881 aa23.34■■□□□ 1.33
SDF2-202ENST00000585428 GGT6Q6P531 493 aa23.33■■□□□ 1.33
SDF2-202ENST00000585428 A2MP01023 1474 aa23.32■■□□□ 1.32
SDF2-202ENST00000585428 NCOA1Q15788 1441 aa23.32■■□□□ 1.32
SDF2-202ENST00000585428 ATP7AQ04656 1500 aa23.31■■□□□ 1.32
SDF2-202ENST00000585428 MBD5Q9P267 1494 aa23.3■■□□□ 1.32
SDF2-202ENST00000585428 NCKAP5LQ9HCH0 1330 aa23.27■■□□□ 1.32
SDF2-202ENST00000585428 PLXNC1O60486 1568 aa23.27■■□□□ 1.32
SDF2-202ENST00000585428 INO80Q9ULG1 1556 aaPredicted RBP23.26■■□□□ 1.31
SDF2-202ENST00000585428 MROH2AA6NES4 1674 aa23.25■■□□□ 1.31
SDF2-202ENST00000585428 PTPRKQ15262 1439 aa23.25■■□□□ 1.31
SDF2-202ENST00000585428 LTBP4Q8N2S1 1624 aa23.25■■□□□ 1.31
SDF2-202ENST00000585428 SUPT6HQ7KZ85 1726 aaKnown RBP23.25■■□□□ 1.31
SDF2-202ENST00000585428 RTEL1-TNFRSF6BF6WH68 1400 aa23.25■■□□□ 1.31
SDF2-202ENST00000585428 CEP162Q5TB80 1403 aa23.25■■□□□ 1.31
SDF2-202ENST00000585428 PKD2Q13563 968 aa23.23■■□□□ 1.31
SDF2-202ENST00000585428 DHX29Q7Z478 1369 aaKnown RBP23.23■■□□□ 1.31
SDF2-202ENST00000585428 CAMSAP1Q5T5Y3 1602 aa23.22■■□□□ 1.31
SDF2-202ENST00000585428 RSPH4AQ5TD94 716 aa23.22■■□□□ 1.31
SDF2-202ENST00000585428 TIAM1Q13009 1591 aa23.21■■□□□ 1.31
SDF2-202ENST00000585428 EHBP1L1Q8N3D4 1523 aa23.18■■□□□ 1.3
SDF2-202ENST00000585428 CLTCQ00610 1675 aaKnown RBP23.17■■□□□ 1.3
SDF2-202ENST00000585428 IQSEC2Q5JU85 1478 aa23.17■■□□□ 1.3
SDF2-202ENST00000585428 KIF3BO15066 747 aa23.16■■□□□ 1.3
SDF2-202ENST00000585428 PLA2R1Q13018 1463 aa23.16■■□□□ 1.3
SDF2-202ENST00000585428 ZNF335Q9H4Z2 1342 aaPredicted RBP23.15■■□□□ 1.3
SDF2-202ENST00000585428 FBXO31Q5XUX0 539 aaPredicted RBP23.14■■□□□ 1.29
SDF2-202ENST00000585428 TCOF1Q13428 1488 aaKnown RBP23.13■■□□□ 1.29
SDF2-202ENST00000585428 ADGBQ8N7X0 1667 aa23.13■■□□□ 1.29
SDF2-202ENST00000585428 ILDR2Q71H61 639 aa23.12■■□□□ 1.29
SDF2-202ENST00000585428 DISP3Q9P2K9 1392 aa23.12■■□□□ 1.29
SDF2-202ENST00000585428 NCOA2Q15596 1464 aa23.11■■□□□ 1.29
SDF2-202ENST00000585428 CEP170BQ9Y4F5 1589 aaPredicted RBP23.1■■□□□ 1.29
SDF2-202ENST00000585428 TSPY4P0CV99 314 aa23.09■■□□□ 1.29
SDF2-202ENST00000585428 TSPY10P0CW01 314 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms