RNA–Protein interactions for RNA: ENST00000583976.1

SKA2-209, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 2

Gene SKA2, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-209ENST00000583976 PCF11O94913 1555 aaKnown RBP25.9■■□□□ 1.74
SKA2-209ENST00000583976 PLCH2O75038 1416 aa25.89■■□□□ 1.74
SKA2-209ENST00000583976 LMTK3Q96Q04 1460 aa25.88■■□□□ 1.73
SKA2-209ENST00000583976 ATP1B4Q9UN42 357 aaPredicted RBP25.88■■□□□ 1.73
SKA2-209ENST00000583976 SCAPERQ9BY12 1400 aa25.86■■□□□ 1.73
SKA2-209ENST00000583976 TROQ12816 1431 aaPredicted RBP25.83■■□□□ 1.73
SKA2-209ENST00000583976 FER1L4A9Z1Z3 1794 aa25.83■■□□□ 1.73
SKA2-209ENST00000583976 MAGI2Q86UL8 1455 aa25.83■■□□□ 1.73
SKA2-209ENST00000583976 ARHGAP5Q13017 1502 aa25.8■■□□□ 1.72
SKA2-209ENST00000583976 PLPPR3Q6T4P5 718 aa25.76■■□□□ 1.71
SKA2-209ENST00000583976 KDM5CP41229 1560 aa25.76■■□□□ 1.71
SKA2-209ENST00000583976 CDC42BPBQ9Y5S2 1711 aa25.75■■□□□ 1.71
SKA2-209ENST00000583976 CLIP1P30622 1438 aa25.75■■□□□ 1.71
SKA2-209ENST00000583976 PREX2Q70Z35 1606 aa25.74■■□□□ 1.71
SKA2-209ENST00000583976 C9orf84Q5VXU9 1444 aa25.74■■□□□ 1.71
SKA2-209ENST00000583976 MLECQ14165 292 aa25.73■■□□□ 1.71
SKA2-209ENST00000583976 ARHGEF12Q9NZN5 1544 aa25.73■■□□□ 1.71
SKA2-209ENST00000583976 ZNF518AQ6AHZ1 1483 aa25.72■■□□□ 1.71
SKA2-209ENST00000583976 ATP10AO60312 1499 aa25.71■■□□□ 1.71
SKA2-209ENST00000583976 CASKIN1Q8WXD9 1431 aa25.71■■□□□ 1.71
SKA2-209ENST00000583976 ABCA6Q8N139 1617 aa25.7■■□□□ 1.71
SKA2-209ENST00000583976 DIP2CQ9Y2E4 1556 aa25.7■■□□□ 1.71
SKA2-209ENST00000583976 EFCAB2Q5VUJ9 269 aa25.7■■□□□ 1.7
SKA2-209ENST00000583976 CDK11AQ9UQ88 783 aaPredicted RBP25.7■■□□□ 1.7
SKA2-209ENST00000583976 ABCC1P33527 1531 aa25.69■■□□□ 1.7
SKA2-209ENST00000583976 CCDC18Q5T9S5 1454 aa25.69■■□□□ 1.7
SKA2-209ENST00000583976 ITSN2Q9NZM3 1697 aa25.68■■□□□ 1.7
SKA2-209ENST00000583976 HSPA2P54652 639 aa25.66■■□□□ 1.7
SKA2-209ENST00000583976 CDC42BPAQ5VT25 1732 aa25.66■■□□□ 1.7
SKA2-209ENST00000583976 FYCO1Q9BQS8 1478 aa25.65■■□□□ 1.7
SKA2-209ENST00000583976 AFAP1Q8N556 730 aa25.62■■□□□ 1.69
SKA2-209ENST00000583976 REREQ9P2R6 1566 aa25.61■■□□□ 1.69
SKA2-209ENST00000583976 PREX1Q8TCU6 1659 aa25.6■■□□□ 1.69
SKA2-209ENST00000583976 TRAPPC8Q9Y2L5 1435 aa25.6■■□□□ 1.69
SKA2-209ENST00000583976 MLH3Q9UHC1 1453 aa25.56■■□□□ 1.68
SKA2-209ENST00000583976 SAMD9LQ8IVG5 1584 aa25.56■■□□□ 1.68
SKA2-209ENST00000583976 KIDINS220Q9ULH0 1771 aa25.55■■□□□ 1.68
SKA2-209ENST00000583976 FBXO41Q8TF61 875 aa25.54■■□□□ 1.68
SKA2-209ENST00000583976 SYCP2Q9BX26 1530 aa25.53■■□□□ 1.68
SKA2-209ENST00000583976 CEBPAP49715 358 aaPredicted RBP25.51■■□□□ 1.67
SKA2-209ENST00000583976 MYT1LQ9UL68 1186 aa25.51■■□□□ 1.67
SKA2-209ENST00000583976 C3P01024 1663 aa25.51■■□□□ 1.67
SKA2-209ENST00000583976 AGLP35573 1532 aa25.48■■□□□ 1.67
SKA2-209ENST00000583976 GPATCH8Q9UKJ3 1502 aaKnown RBP25.46■■□□□ 1.67
SKA2-209ENST00000583976 STRCQ7RTU9 1775 aa25.43■■□□□ 1.66
SKA2-209ENST00000583976 INO80Q9ULG1 1556 aaPredicted RBP25.41■■□□□ 1.66
SKA2-209ENST00000583976 UHRF1BP1Q6BDS2 1440 aa25.41■■□□□ 1.66
SKA2-209ENST00000583976 ZNF777Q9ULD5 760 aaPredicted RBP25.4■■□□□ 1.66
SKA2-209ENST00000583976 ATP7AQ04656 1500 aa25.38■■□□□ 1.65
SKA2-209ENST00000583976 TIAM1Q13009 1591 aa25.38■■□□□ 1.65
SKA2-209ENST00000583976 SUPT6HQ7KZ85 1726 aaKnown RBP25.37■■□□□ 1.65
SKA2-209ENST00000583976 PLXNC1O60486 1568 aa25.36■■□□□ 1.65
SKA2-209ENST00000583976 EHBP1L1Q8N3D4 1523 aa25.34■■□□□ 1.65
SKA2-209ENST00000583976 MROH2AA6NES4 1674 aa25.32■■□□□ 1.64
SKA2-209ENST00000583976 MTUS2Q5JR59 1369 aa25.32■■□□□ 1.64
SKA2-209ENST00000583976 CCNB3Q8WWL7 1395 aa25.31■■□□□ 1.64
SKA2-209ENST00000583976 HNRNPMP52272 730 aaKnown RBP eCLIP25.31■■□□□ 1.64
SKA2-209ENST00000583976 SETD1BQ9UPS6 1966 aaKnown RBP25.3■■□□□ 1.64
SKA2-209ENST00000583976 SPAG9O60271 1321 aaKnown RBP25.3■■□□□ 1.64
SKA2-209ENST00000583976 CLTCQ00610 1675 aaKnown RBP25.29■■□□□ 1.64
SKA2-209ENST00000583976 CEP162Q5TB80 1403 aa25.29■■□□□ 1.64
SKA2-209ENST00000583976 CNTLNQ9NXG0 1405 aa25.29■■□□□ 1.64
SKA2-209ENST00000583976 KIAA1107Q9UPP5 1409 aa25.29■■□□□ 1.64
SKA2-209ENST00000583976 PLEKHH2Q8IVE3 1493 aa25.29■■□□□ 1.64
SKA2-209ENST00000583976 CERKQ8TCT0 537 aa25.27■■□□□ 1.64
SKA2-209ENST00000583976 CFDP1Q9UEE9 299 aaPredicted RBP25.26■■□□□ 1.63
SKA2-209ENST00000583976 A2MP01023 1474 aa25.26■■□□□ 1.63
SKA2-209ENST00000583976 ESF1Q9H501 851 aaKnown RBP25.25■■□□□ 1.63
SKA2-209ENST00000583976 ADGBQ8N7X0 1667 aa25.23■■□□□ 1.63
SKA2-209ENST00000583976 MYO3AQ8NEV4 1616 aa25.23■■□□□ 1.63
SKA2-209ENST00000583976 ZNF644Q9H582 1327 aaPredicted RBP25.22■■□□□ 1.63
SKA2-209ENST00000583976 MBD5Q9P267 1494 aa25.21■■□□□ 1.63
SKA2-209ENST00000583976 NCOA1Q15788 1441 aa25.2■■□□□ 1.63
SKA2-209ENST00000583976 NPATQ14207 1427 aa25.2■■□□□ 1.62
SKA2-209ENST00000583976 ZNF142P52746 1687 aaPredicted RBP25.19■■□□□ 1.62
SKA2-209ENST00000583976 CAMSAP1Q5T5Y3 1602 aa25.19■■□□□ 1.62
SKA2-209ENST00000583976 PTPRTO14522 1441 aa25.16■■□□□ 1.62
SKA2-209ENST00000583976 ZMYM3Q14202 1370 aa25.16■■□□□ 1.62
SKA2-209ENST00000583976 NCOA2Q15596 1464 aa25.15■■□□□ 1.62
SKA2-209ENST00000583976 CAMSAP2Q08AD1 1489 aa25.15■■□□□ 1.62
SKA2-209ENST00000583976 LTBP4Q8N2S1 1624 aa25.13■■□□□ 1.61
SKA2-209ENST00000583976 CEP170BQ9Y4F5 1589 aaPredicted RBP25.13■■□□□ 1.61
SKA2-209ENST00000583976 PTPRKQ15262 1439 aa25.12■■□□□ 1.61
SKA2-209ENST00000583976 DMRT2Q9Y5R5 561 aa25.11■■□□□ 1.61
SKA2-209ENST00000583976 CCDC141Q6ZP82 1450 aa25.1■■□□□ 1.61
SKA2-209ENST00000583976 GGT6Q6P531 493 aa25.09■■□□□ 1.61
SKA2-209ENST00000583976 RTEL1-TNFRSF6BF6WH68 1400 aa25.06■■□□□ 1.6
SKA2-209ENST00000583976 VPS8Q8N3P4 1428 aa25.02■■□□□ 1.6
SKA2-209ENST00000583976 PLA2R1Q13018 1463 aa25.02■■□□□ 1.6
SKA2-209ENST00000583976 KDM5DQ9BY66 1539 aa25.02■■□□□ 1.6
SKA2-209ENST00000583976 ARHGEF5Q12774 1597 aa25.01■■□□□ 1.59
SKA2-209ENST00000583976 DHX29Q7Z478 1369 aaKnown RBP25.01■■□□□ 1.59
SKA2-209ENST00000583976 TCOF1Q13428 1488 aaKnown RBP25.01■■□□□ 1.59
SKA2-209ENST00000583976 NCKAP5LQ9HCH0 1330 aa25■■□□□ 1.59
SKA2-209ENST00000583976 LRRC9Q6ZRR7 1453 aa24.99■■□□□ 1.59
SKA2-209ENST00000583976 DNMT1P26358 1616 aaKnown RBP24.98■■□□□ 1.59
SKA2-209ENST00000583976 A2ML1A8K2U0 1454 aa24.96■■□□□ 1.59
SKA2-209ENST00000583976 ZNF335Q9H4Z2 1342 aaPredicted RBP24.95■■□□□ 1.58
SKA2-209ENST00000583976 PZPP20742 1482 aa24.95■■□□□ 1.58
SKA2-209ENST00000583976 IQSEC2Q5JU85 1478 aa24.95■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms